Literature DB >> 22992183

Femtosecond conical intersection dynamics of tryptophan in proteins and validation of slowdown of hydration layer dynamics.

Jin Yang1, Luyuan Zhang, Lijuan Wang, Dongping Zhong.   

Abstract

Water motion probed by intrinsic tryptophan shows the significant slowdown around protein surfaces, but it is unknown how the ultrafast internal conversion of two nearly degenerate states of Trp ((1)L(a) and (1)L(b)) affects the initial hydration in proteins. Here, we used a mini-protein with 10 different tryptophan locations one at a time through site-directed mutagenesis and extensively characterized the conversion dynamics of the two states. We observed all the conversion time scales in 40-80 fs by measurement of their anisotropy dynamics. This result is significant and shows no noticeable effect on the initial observed hydration dynamics and unambiguously validates the slowdown of hydration layer dynamics as shown here again in two mutant proteins.

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Year:  2012        PMID: 22992183      PMCID: PMC3468670          DOI: 10.1021/ja305283j

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  34 in total

1.  Biological water at the protein surface: dynamical solvation probed directly with femtosecond resolution.

Authors:  Samir Kumar Pal; Jorge Peon; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-12       Impact factor: 11.205

Review 2.  Dynamics of water in biological recognition.

Authors:  Samir Kumar Pal; Ahmed H Zewail
Journal:  Chem Rev       Date:  2004-04       Impact factor: 60.622

3.  Dissection of complex protein dynamics in human thioredoxin.

Authors:  Weihong Qiu; Lijuan Wang; Wenyun Lu; Amanda Boechler; David A R Sanders; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-16       Impact factor: 11.205

4.  Mapping hydration dynamics around a protein surface.

Authors:  Luyuan Zhang; Lijuan Wang; Ya-Ting Kao; Weihong Qiu; Yi Yang; Oghaghare Okobiah; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-14       Impact factor: 11.205

5.  The polarization anisotropy of vibrational quantum beats in resonant pump-probe experiments: Diagrammatic calculations for square symmetric molecules.

Authors:  Darcie A Farrow; Eric R Smith; Wei Qian; David M Jonas
Journal:  J Chem Phys       Date:  2008-11-07       Impact factor: 3.488

6.  Polarized pump-probe measurements of electronic motion via a conical intersection.

Authors:  Darcie A Farrow; Wei Qian; Eric R Smith; Allison A Ferro; David M Jonas
Journal:  J Chem Phys       Date:  2008-04-14       Impact factor: 3.488

7.  Ultrafast solvation dynamics at binding and active sites of photolyases.

Authors:  Chih-Wei Chang; Lijun Guo; Ya-Ting Kao; Jiang Li; Chuang Tan; Tanping Li; Chaitanya Saxena; Zheyun Liu; Lijuan Wang; Aziz Sancar; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-26       Impact factor: 11.205

8.  Magnitude and molecular origin of water slowdown next to a protein.

Authors:  Fabio Sterpone; Guillaume Stirnemann; Damien Laage
Journal:  J Am Chem Soc       Date:  2012-02-22       Impact factor: 15.419

9.  Hydration at the surface of the protein Monellin: dynamics with femtosecond resolution.

Authors:  Jorge Peon; Samir Kumar Pal; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-12       Impact factor: 11.205

10.  Essential on the Photophysics and Photochemistry of the Indole Chromophore by Using a Totally Unconstrained Theoretical Approach.

Authors:  Angelo Giussani; Manuela Merchán; Daniel Roca-Sanjuán; Roland Lindh
Journal:  J Chem Theory Comput       Date:  2011-11-21       Impact factor: 6.006

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  12 in total

1.  Dynamics and mechanism of ultrafast water-protein interactions.

Authors:  Yangzhong Qin; Lijuan Wang; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-23       Impact factor: 11.205

2.  Ultrafast Dynamics of Water-Protein Coupled Motions around the Surface of Eye Crystallin.

Authors:  Patrick Houston; Nicolas Macro; Minhee Kang; Long Chen; Jin Yang; Lijuan Wang; Zhengrong Wu; Dongping Zhong
Journal:  J Am Chem Soc       Date:  2020-02-11       Impact factor: 15.419

3.  Picosecond fluorescence dynamics of tryptophan and 5-fluorotryptophan in monellin: slow water-protein relaxation unmasked.

Authors:  Jianhua Xu; Binbin Chen; Patrik Callis; Pedro L Muiño; Henriëtte Rozeboom; Jaap Broos; Dmitri Toptygin; Ludwig Brand; Jay R Knutson
Journal:  J Phys Chem B       Date:  2015-03-04       Impact factor: 2.991

4.  Direct probing of solvent accessibility and mobility at the binding interface of polymerase (Dpo4)-DNA complex.

Authors:  Yangzhong Qin; Yi Yang; Luyuan Zhang; Jason D Fowler; Weihong Qiu; Lijuan Wang; Zucai Suo; Dongping Zhong
Journal:  J Phys Chem A       Date:  2013-12-05       Impact factor: 2.781

5.  Femtosecond Fluorescence Spectra of NADH in Solution: Ultrafast Solvation Dynamics.

Authors:  Simin Cao; Haoyang Li; Yangyi Liu; Mengjie Zhang; Mengyu Wang; Zhongneng Zhou; Jinquan Chen; Sanjun Zhang; Jianhua Xu; Jay R Knutson
Journal:  J Phys Chem B       Date:  2020-01-24       Impact factor: 2.991

Review 6.  Water Dynamics in the Hydration Shells of Biomolecules.

Authors:  Damien Laage; Thomas Elsaesser; James T Hynes
Journal:  Chem Rev       Date:  2017-03-01       Impact factor: 60.622

7.  Charge invariant protein-water relaxation in GB1 via ultrafast tryptophan fluorescence.

Authors:  Arianna Biesso; Jianhua Xu; Pedro L Muíño; Patrik R Callis; Jay R Knutson
Journal:  J Am Chem Soc       Date:  2014-02-06       Impact factor: 15.419

8.  Picosecond-resolved fluorescence studies of substrate and cofactor-binding domain mutants in a thermophilic alcohol dehydrogenase uncover an extended network of communication.

Authors:  Corey W Meadows; Jonathan E Tsang; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2014-10-14       Impact factor: 15.419

Review 9.  Ultrafast Fluorescence Spectroscopy via Upconversion and Its Applications in Biophysics.

Authors:  Simin Cao; Haoyang Li; Zenan Zhao; Sanjun Zhang; Jinquan Chen; Jianhua Xu; Jay R Knutson; Ludwig Brand
Journal:  Molecules       Date:  2021-01-03       Impact factor: 4.411

10.  Ultrafast water dynamics at the interface of the polymerase-DNA binding complex.

Authors:  Yi Yang; Yangzhong Qin; Qing Ding; Marina Bakhtina; Lijuan Wang; Ming-Daw Tsai; Dongping Zhong
Journal:  Biochemistry       Date:  2014-08-15       Impact factor: 3.162

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