Literature DB >> 18003912

Mapping hydration dynamics around a protein surface.

Luyuan Zhang1, Lijuan Wang, Ya-Ting Kao, Weihong Qiu, Yi Yang, Oghaghare Okobiah, Dongping Zhong.   

Abstract

Protein surface hydration is fundamental to its structure and activity. We report here the direct mapping of global hydration dynamics around a protein in its native and molten globular states, using a tryptophan scan by site-specific mutations. With 16 tryptophan mutants and in 29 different positions and states, we observed two robust, distinct water dynamics in the hydration layer on a few ( approximately 1-8 ps) and tens to hundreds of picoseconds ( approximately 20-200 ps), representing the initial local relaxation and subsequent collective network restructuring, respectively. Both time scales are strongly correlated with protein's structural and chemical properties. These results reveal the intimate relationship between hydration dynamics and protein fluctuations and such biologically relevant water-protein interactions fluctuate on picosecond time scales.

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Year:  2007        PMID: 18003912      PMCID: PMC2141799          DOI: 10.1073/pnas.0707647104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

1.  Biological water at the protein surface: dynamical solvation probed directly with femtosecond resolution.

Authors:  Samir Kumar Pal; Jorge Peon; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-12       Impact factor: 11.205

Review 2.  Dynamics of water in biological recognition.

Authors:  Samir Kumar Pal; Ahmed H Zewail
Journal:  Chem Rev       Date:  2004-04       Impact factor: 60.622

3.  Structural characterization of a partly folded apomyoglobin intermediate.

Authors:  F M Hughson; P E Wright; R L Baldwin
Journal:  Science       Date:  1990-09-28       Impact factor: 47.728

4.  Dissection of complex protein dynamics in human thioredoxin.

Authors:  Weihong Qiu; Lijuan Wang; Wenyun Lu; Amanda Boechler; David A R Sanders; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-16       Impact factor: 11.205

5.  Structural and dynamic characterization of partially folded states of apomyoglobin and implications for protein folding.

Authors:  D Eliezer; J Yao; H J Dyson; P E Wright
Journal:  Nat Struct Biol       Date:  1998-02

6.  Neutron diffraction reveals oxygen-histidine hydrogen bond in oxymyoglobin.

Authors:  S E Phillips; B P Schoenborn
Journal:  Nature       Date:  1981-07-02       Impact factor: 49.962

7.  Functional waters in intraprotein proton transfer monitored by FTIR difference spectroscopy.

Authors:  Florian Garczarek; Klaus Gerwert
Journal:  Nature       Date:  2005-11-09       Impact factor: 49.962

8.  Native and non-native secondary structure and dynamics in the pH 4 intermediate of apomyoglobin.

Authors:  D Eliezer; J Chung; H J Dyson; P E Wright
Journal:  Biochemistry       Date:  2000-03-21       Impact factor: 3.162

9.  Solution and crystal structures of a sperm whale myoglobin triple mutant that mimics the sulfide-binding hemoglobin from Lucina pectinata.

Authors:  B D Nguyen; X Zhao; K Vyas; G N La Mar; R A Lile; E A Brucker; G N Phillips; J S Olson; J B Wittenberg
Journal:  J Biol Chem       Date:  1998-04-17       Impact factor: 5.157

10.  Hydrophobic collapse in multidomain protein folding.

Authors:  Ruhong Zhou; Xuhui Huang; Claudio J Margulis; Bruce J Berne
Journal:  Science       Date:  2004-09-10       Impact factor: 47.728

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  68 in total

Review 1.  Dynamics and mechanisms of DNA repair by photolyase.

Authors:  Zheyun Liu; Lijuan Wang; Dongping Zhong
Journal:  Phys Chem Chem Phys       Date:  2015-05-14       Impact factor: 3.676

2.  Site-specific hydration dynamics of globular proteins and the role of constrained water in solvent exchange with amphiphilic cosolvents.

Authors:  John T King; Evan J Arthur; Charles L Brooks; Kevin J Kubarych
Journal:  J Phys Chem B       Date:  2012-05-07       Impact factor: 2.991

3.  Ordered water structure at hydrophobic graphite interfaces observed by 4D, ultrafast electron crystallography.

Authors:  Ding-Shyue Yang; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-25       Impact factor: 11.205

4.  A unified model of protein dynamics.

Authors:  Hans Frauenfelder; Guo Chen; Joel Berendzen; Paul W Fenimore; Helén Jansson; Benjamin H McMahon; Izabela R Stroe; Jan Swenson; Robert D Young
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-27       Impact factor: 11.205

5.  Solvation in protein (un)folding of melittin tetramer-monomer transition.

Authors:  Christina M Othon; Oh-Hoon Kwon; Milo M Lin; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-21       Impact factor: 11.205

6.  Hydration dynamics in a partially denatured ensemble of the globular protein human alpha-lactalbumin investigated with molecular dynamics simulations.

Authors:  Neelanjana Sengupta; Simon Jaud; Douglas J Tobias
Journal:  Biophys J       Date:  2008-09-05       Impact factor: 4.033

7.  Ultrafast solvation dynamics at binding and active sites of photolyases.

Authors:  Chih-Wei Chang; Lijun Guo; Ya-Ting Kao; Jiang Li; Chuang Tan; Tanping Li; Chaitanya Saxena; Zheyun Liu; Lijuan Wang; Aziz Sancar; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-26       Impact factor: 11.205

8.  Hydration water mobility is enhanced around tau amyloid fibers.

Authors:  Yann Fichou; Giorgio Schirò; François-Xavier Gallat; Cedric Laguri; Martine Moulin; Jérôme Combet; Michaela Zamponi; Michael Härtlein; Catherine Picart; Estelle Mossou; Hugues Lortat-Jacob; Jacques-Philippe Colletier; Douglas J Tobias; Martin Weik
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

Review 9.  Monitoring protein interactions and dynamics with solvatochromic fluorophores.

Authors:  Galen S Loving; Matthieu Sainlos; Barbara Imperiali
Journal:  Trends Biotechnol       Date:  2009-12-03       Impact factor: 19.536

10.  A peptide's perspective of water dynamics.

Authors:  Ayanjeet Ghosh; Robin M Hochstrasser
Journal:  Chem Phys       Date:  2011-08-11       Impact factor: 2.348

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