Literature DB >> 22335572

Magnitude and molecular origin of water slowdown next to a protein.

Fabio Sterpone1, Guillaume Stirnemann, Damien Laage.   

Abstract

Hydration shell dynamics plays a critical role in protein folding and biochemical activity and has thus been actively studied through a broad range of techniques. While all observations concur with a slowdown of water dynamics relative to the bulk, the magnitude and molecular origin of this retardation remain unclear. Via numerical simulations and theoretical modeling, we establish a molecular description of protein hydration dynamics and identify the key protein features that govern it. Through detailed microscopic mapping of the water reorientation and hydrogen-bond (HB) dynamics around lysozyme, we first determine that 80% of the hydration layer waters experience a moderate slowdown factor of ~2-3, while the slower residual population is distributed along a power-law tail, in quantitative agreement with recent NMR results. We then establish that the water reorientation mechanism at the protein interface is dominated by large angular jumps similar to the bulk situation. A theoretical extended jump model is shown to provide the first rigorous determination of the two key contributions to the observed slowdown: a topological excluded-volume factor resulting from the local protein geometry, which governs the dynamics of the fastest 80% of the waters, and a free energetic factor arising from the water-protein HB strength, which is especially important for the remaining waters in confined sites at the protein interface. These simple local factors are shown to provide a nearly quantitative description of the hydration shell dynamics.
© 2012 American Chemical Society

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Year:  2012        PMID: 22335572     DOI: 10.1021/ja3007897

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  35 in total

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Authors:  Flavia Squeglia; Maria Romano; Alessia Ruggiero; Luigi Vitagliano; Alfonso De Simone; Rita Berisio
Journal:  Biophys J       Date:  2013-06-04       Impact factor: 4.033

2.  Molecular Effects of Concentrated Solutes on Protein Hydration, Dynamics, and Electrostatics.

Authors:  Luciano A Abriata; Enrico Spiga; Matteo Dal Peraro
Journal:  Biophys J       Date:  2016-08-23       Impact factor: 4.033

3.  Hydrogen Bond Network of Water around Protein Investigated with Terahertz and Infrared Spectroscopy.

Authors:  Keiichiro Shiraga; Yuichi Ogawa; Naoshi Kondo
Journal:  Biophys J       Date:  2016-12-20       Impact factor: 4.033

4.  Water dynamics in concentrated electrolytes: Local ion effect on hydrogen-bond jumps rather than collective coupling to ion clusters.

Authors:  Guillaume Stirnemann; Pavel Jungwirth; Damien Laage
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-10       Impact factor: 11.205

5.  Hydration Structure and Dynamics of Inhibitor-Bound HIV-1 Protease.

Authors:  Florian Leidner; Nese Kurt Yilmaz; Janet Paulsen; Yves A Muller; Celia A Schiffer
Journal:  J Chem Theory Comput       Date:  2018-04-18       Impact factor: 6.006

6.  Characterizing Protein Hydration Dynamics Using Solution NMR Spectroscopy.

Authors:  Christine Jorge; Bryan S Marques; Kathleen G Valentine; A Joshua Wand
Journal:  Methods Enzymol       Date:  2018-12-04       Impact factor: 1.600

7.  Femtosecond conical intersection dynamics of tryptophan in proteins and validation of slowdown of hydration layer dynamics.

Authors:  Jin Yang; Luyuan Zhang; Lijuan Wang; Dongping Zhong
Journal:  J Am Chem Soc       Date:  2012-09-26       Impact factor: 15.419

8.  The dynamics of peptide-water interactions in dialanine: An ultrafast amide I 2D IR and computational spectroscopy study.

Authors:  Chi-Jui Feng; Andrei Tokmakoff
Journal:  J Chem Phys       Date:  2017-08-28       Impact factor: 3.488

9.  Hydration water mobility is enhanced around tau amyloid fibers.

Authors:  Yann Fichou; Giorgio Schirò; François-Xavier Gallat; Cedric Laguri; Martine Moulin; Jérôme Combet; Michaela Zamponi; Michael Härtlein; Catherine Picart; Estelle Mossou; Hugues Lortat-Jacob; Jacques-Philippe Colletier; Douglas J Tobias; Martin Weik
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-27       Impact factor: 11.205

10.  Anomalously Rapid Hydration Water Diffusion Dynamics Near DNA Surfaces.

Authors:  John M Franck; Yuan Ding; Katherine Stone; Peter Z Qin; Songi Han
Journal:  J Am Chem Soc       Date:  2015-09-10       Impact factor: 15.419

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