Literature DB >> 28248491

Water Dynamics in the Hydration Shells of Biomolecules.

Damien Laage1,2, Thomas Elsaesser3, James T Hynes1,2,4.   

Abstract

The structure and function of biomolecules are strongly influenced by their hydration shells. Structural fluctuations and molecular excitations of hydrating water molecules cover a broad range in space and time, from individual water molecules to larger pools and from femtosecond to microsecond time scales. Recent progress in theory and molecular dynamics simulations as well as in ultrafast vibrational spectroscopy has led to new and detailed insight into fluctuations of water structure, elementary water motions, electric fields at hydrated biointerfaces, and processes of vibrational relaxation and energy dissipation. Here, we review recent advances in both theory and experiment, focusing on hydrated DNA, proteins, and phospholipids, and compare dynamics in the hydration shells to bulk water.

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Year:  2017        PMID: 28248491      PMCID: PMC5571470          DOI: 10.1021/acs.chemrev.6b00765

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  231 in total

1.  Exploring DNA groove water dynamics through hydrogen bond lifetime and orientational relaxation.

Authors:  Subrata Pal; Prabal K Maiti; Biman Bagchi
Journal:  J Chem Phys       Date:  2006-12-21       Impact factor: 3.488

2.  The dynamics of water-protein interaction studied by ultrafast optical Kerr-effect spectroscopy.

Authors:  Neil T Hunt; Lisa Kattner; Richard P Shanks; Klaas Wynne
Journal:  J Am Chem Soc       Date:  2007-02-23       Impact factor: 15.419

3.  An extended dynamical hydration shell around proteins.

Authors:  Simon Ebbinghaus; Seung Joong Kim; Matthias Heyden; Xin Yu; Udo Heugen; Martin Gruebele; David M Leitner; Martina Havenith
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-19       Impact factor: 11.205

4.  Does the dynamic Stokes shift report on slow protein hydration dynamics?

Authors:  Bertil Halle; Lennart Nilsson
Journal:  J Phys Chem B       Date:  2009-06-18       Impact factor: 2.991

5.  A unified model of protein dynamics.

Authors:  Hans Frauenfelder; Guo Chen; Joel Berendzen; Paul W Fenimore; Helén Jansson; Benjamin H McMahon; Izabela R Stroe; Jan Swenson; Robert D Young
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-27       Impact factor: 11.205

6.  Hydration shells of proteins probed by depolarized light scattering and dielectric spectroscopy: orientational structure is significant, positional structure is not.

Authors:  Daniel R Martin; Dmitry V Matyushov
Journal:  J Chem Phys       Date:  2014-12-14       Impact factor: 3.488

7.  The influence of a protein on water dynamics in its vicinity investigated by molecular dynamics simulation.

Authors:  R Abseher; H Schreiber; O Steinhauser
Journal:  Proteins       Date:  1996-07

8.  Dimensionality of diffusive exploration at the protein interface in solution.

Authors:  Denis S Grebenkov; Yanina A Goddard; Galina Diakova; Jean-Pierre Korb; Robert G Bryant
Journal:  J Phys Chem B       Date:  2009-10-08       Impact factor: 2.991

9.  Diffusion of Hydration Water around Intrinsically Disordered Proteins.

Authors:  Pooja Rani; Parbati Biswas
Journal:  J Phys Chem B       Date:  2015-10-08       Impact factor: 2.991

10.  Ultrafast vibrational dynamics of the DNA backbone at different hydration levels mapped by two-dimensional infrared spectroscopy.

Authors:  Biswajit Guchhait; Yingliang Liu; Torsten Siebert; Thomas Elsaesser
Journal:  Struct Dyn       Date:  2015-12-08       Impact factor: 2.920

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  76 in total

1.  Mapping three guanine oxidation products along DNA following exposure to three types of reactive oxygen species.

Authors:  Brock Matter; Christopher L Seiler; Kristopher Murphy; Xun Ming; Jianwei Zhao; Bruce Lindgren; Roger Jones; Natalia Tretyakova
Journal:  Free Radic Biol Med       Date:  2018-04-25       Impact factor: 7.376

Review 2.  Locating and Navigating Energy Transport Networks in Proteins.

Authors:  Korey M Reid; David M Leitner
Journal:  Methods Mol Biol       Date:  2021

3.  Mirror-image antiparallel β-sheets organize water molecules into superstructures of opposite chirality.

Authors:  Ethan A Perets; Daniel Konstantinovsky; Li Fu; Jiantao Chen; Hong-Fei Wang; Sharon Hammes-Schiffer; Elsa C Y Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-14       Impact factor: 11.205

4.  Computational discovery of chemically patterned surfaces that effect unique hydration water dynamics.

Authors:  Jacob I Monroe; M Scott Shell
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-23       Impact factor: 11.205

5.  Pattern preferences of DNA nucleotide motifs by polyamines putrescine2+, spermidine3+ and spermine4.

Authors:  Sergiy Perepelytsya; Jozef Uličný; Aatto Laaksonen; Francesca Mocci
Journal:  Nucleic Acids Res       Date:  2019-07-09       Impact factor: 16.971

6.  Dynamics of hydration water in gelatin and hyaluronic acid hydrogels.

Authors:  Sotiria Kripotou; Konstantinos Zafeiris; Maria Culebras-Martínez; Gloria Gallego Ferrer; Apostolos Kyritsis
Journal:  Eur Phys J E Soft Matter       Date:  2019-08-27       Impact factor: 1.890

7.  Water dynamics in concentrated electrolytes: Local ion effect on hydrogen-bond jumps rather than collective coupling to ion clusters.

Authors:  Guillaume Stirnemann; Pavel Jungwirth; Damien Laage
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-10       Impact factor: 11.205

8.  Hydration Structure and Dynamics of Inhibitor-Bound HIV-1 Protease.

Authors:  Florian Leidner; Nese Kurt Yilmaz; Janet Paulsen; Yves A Muller; Celia A Schiffer
Journal:  J Chem Theory Comput       Date:  2018-04-18       Impact factor: 6.006

9.  Nonequilibrium dynamics of photoinduced forward and backward electron transfer reactions.

Authors:  Yangyi Lu; Dongping Zhong
Journal:  J Chem Phys       Date:  2020-02-14       Impact factor: 3.488

10.  Protein refractive index increment is determined by conformation as well as composition.

Authors:  Domarin Khago; Jan C Bierma; Kyle W Roskamp; Natalia Kozlyuk; Rachel W Martin
Journal:  J Phys Condens Matter       Date:  2018-10-03       Impact factor: 2.333

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