Literature DB >> 25710196

Picosecond fluorescence dynamics of tryptophan and 5-fluorotryptophan in monellin: slow water-protein relaxation unmasked.

Jianhua Xu1, Binbin Chen1, Patrik Callis, Pedro L Muiño2, Henriëtte Rozeboom3, Jaap Broos3, Dmitri Toptygin4, Ludwig Brand4, Jay R Knutson1.   

Abstract

Time dependent fluorescence Stokes (emission wavelength) shifts (TDFSS) from tryptophan (Trp) following sub-picosecond excitation are increasingly used to investigate protein dynamics, most recently enabling active research interest into water dynamics near the surface of proteins. Unlike many fluorescence probes, both the efficiency and the wavelength of Trp fluorescence in proteins are highly sensitive to microenvironment, and Stokes shifts can be dominated by the well-known heterogeneous nature of protein structure, leading to what we call pseudo-TDFSS: shifts that arise from differential decay rates of subpopulations. Here we emphasize a novel, general method that obviates pseudo-TDFSS by replacing Trp by 5-fluorotryptophan (5Ftrp), a fluorescent analogue with higher ionization potential and greatly suppressed electron-transfer quenching. 5FTrp slows and suppresses pseudo-TDFSS, thereby providing a clearer view of genuine relaxation caused by solvent and protein response. This procedure is applied to the sweet-tasting protein monellin which has uniquely been the subject of ultrafast studies in two different laboratories (Peon, J.; et al. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 10964; Xu, J.; et al. J. Am. Chem. Soc. 2006, 128, 1214) that led to disparate interpretations of a 20 ps transient. They differed because of the pseudo-TDFSS present. The current study exploiting special properties of 5FTrp strongly supports the conclusion that both lifetime heterogeneity-based TDFSS and environment relaxation-based TDFSS are present in monellin and 5FTrp-monellin. The original experiments on monellin were most likely dominated by pseudo-TDFSS, whereas, in the present investigation of 5FTrp-monellin, the TDFSS is dominated by relaxation and any residual pseudo-TDFSS is overwhelmed and/or slowed to irrelevance.

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Year:  2015        PMID: 25710196      PMCID: PMC7477844          DOI: 10.1021/acs.jpcb.5b01651

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  55 in total

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Journal:  J Phys Chem A       Date:  2010-05-06       Impact factor: 2.781

Review 2.  Fluorescence techniques for studying protein structure.

Authors:  M R Eftink
Journal:  Methods Biochem Anal       Date:  1991

3.  Hydration dynamics and time scales of coupled water-protein fluctuations.

Authors:  Tanping Li; Ali A Hassanali; Ya-Ting Kao; Dongping Zhong; Sherwin J Singer
Journal:  J Am Chem Soc       Date:  2007-02-24       Impact factor: 15.419

4.  Nanosecond Stokes shift dynamics, dynamical transition, and gigantic reorganization energy of hydrated heme proteins.

Authors:  Dmitry V Matyushov
Journal:  J Phys Chem B       Date:  2011-08-18       Impact factor: 2.991

5.  Protein hydration dynamics and molecular mechanism of coupled water-protein fluctuations.

Authors:  Luyuan Zhang; Yi Yang; Ya-Ting Kao; Lijuan Wang; Dongping Zhong
Journal:  J Am Chem Soc       Date:  2009-08-05       Impact factor: 15.419

6.  Photophysics of tryptophan fluorescence: link with the catalytic strategy of the citrate synthase from Thermoplasma acidophilum.

Authors:  Linda C Kurz; Brett Fite; John Jean; Jung Park; Tim Erpelding; Patrik Callis
Journal:  Biochemistry       Date:  2005-02-08       Impact factor: 3.162

7.  Hydration at the surface of the protein Monellin: dynamics with femtosecond resolution.

Authors:  Jorge Peon; Samir Kumar Pal; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-12       Impact factor: 11.205

8.  Conformational heterogeneity and quasi-static self-quenching in DNA containing a fluorescent guanine analogue, 3MI or 6MI.

Authors:  Kristi Wojtuszewski Poulin; Aleksandr V Smirnov; Mary E Hawkins; Frank M Balis; Jay R Knutson
Journal:  Biochemistry       Date:  2009-09-22       Impact factor: 3.162

9.  In vivo synthesized proteins with monoexponential fluorescence decay kinetics.

Authors:  Jaap Broos; Francesco Maddalena; Ben H Hesp
Journal:  J Am Chem Soc       Date:  2004-01-14       Impact factor: 15.419

10.  Transcriptional activation domain of the herpesvirus protein VP16 becomes conformationally constrained upon interaction with basal transcription factors.

Authors:  F Shen; S J Triezenberg; P Hensley; D Porter; J R Knutson
Journal:  J Biol Chem       Date:  1996-03-01       Impact factor: 5.157

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  6 in total

1.  Utility of 5-Cyanotryptophan Fluorescence as a Sensitive Probe of Protein Hydration.

Authors:  Beatrice N Markiewicz; Debopreeti Mukherjee; Thomas Troxler; Feng Gai
Journal:  J Phys Chem B       Date:  2016-01-28       Impact factor: 2.991

2.  Upconversion spectrophotofluorometry.

Authors:  Arianna Biesso; Jianhua Xu; Jay R Knutson
Journal:  Methods Mol Biol       Date:  2014

3.  Femtosecond Fluorescence Spectra of NADH in Solution: Ultrafast Solvation Dynamics.

Authors:  Simin Cao; Haoyang Li; Yangyi Liu; Mengjie Zhang; Mengyu Wang; Zhongneng Zhou; Jinquan Chen; Sanjun Zhang; Jianhua Xu; Jay R Knutson
Journal:  J Phys Chem B       Date:  2020-01-24       Impact factor: 2.991

4.  Resolution of Two Sub-Populations of Conformers and Their Individual Dynamics by Time Resolved Ensemble Level FRET Measurements.

Authors:  Gil Rahamim; Marina Chemerovski-Glikman; Shai Rahimipour; Dan Amir; Elisha Haas
Journal:  PLoS One       Date:  2015-12-23       Impact factor: 3.240

Review 5.  Ultrafast Fluorescence Spectroscopy via Upconversion and Its Applications in Biophysics.

Authors:  Simin Cao; Haoyang Li; Zenan Zhao; Sanjun Zhang; Jinquan Chen; Jianhua Xu; Jay R Knutson; Ludwig Brand
Journal:  Molecules       Date:  2021-01-03       Impact factor: 4.411

6.  Environment-Driven Coherent Population Transfer Governs the Ultrafast Photophysics of Tryptophan.

Authors:  Vishal Kumar Jaiswal; Piotr Kabaciński; Barbara E Nogueira de Faria; Marziogiuseppe Gentile; Ana Maria de Paula; Rocio Borrego-Varillas; Artur Nenov; Irene Conti; Giulio Cerullo; Marco Garavelli
Journal:  J Am Chem Soc       Date:  2022-07-07       Impact factor: 16.383

  6 in total

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