Literature DB >> 20872032

Molecular surface electrostatic potentials as guides to Si-O-N angle contraction: tunable σ-holes.

Jane S Murray1, Monica C Concha, Peter Politzer.   

Abstract

We have demonstrated that the variation in the experimentally-determined Si-O-N angles in XYZSi-O-N(CH(3))(2) molecules, which depends upon the positions and natures of the substituents X, Y and Z, can be explained in terms of computed electrostatic potentials on the molecular surfaces of the corresponding XYZSi-H molecules. The latter framework has been used as a model for what the nitrogen lone pair in the XYZSi-O-N(CH(3))(2) molecules sees. Both optimized geometries and electrostatic potentials of our model XYZSi-H systems have been obtained at the B3PW91/6-31G(d,p) level. We propose that the driving force for the observed Si-O-N angle contraction in XYZSi-O-N(CH(3))(2) molecules is largely the electrostatic attraction between a positive σ-hole on the silicon and the lone pair of the nitrogen. Negative regions that may be near the silicon σ-hole, arising from substituents with negative potentials, also play an important role, as they impede the approach of the nitrogen lone pair. These two factors work in synergy and attest to the electrostatically-driven nature of the Si---N intramolecular interactions, highlighting their tunability.

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Year:  2010        PMID: 20872032     DOI: 10.1007/s00894-010-0836-z

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  13 in total

1.  Quantitative analysis of molecular surfaces: areas, volumes, electrostatic potentials and average local ionization energies.

Authors:  Felipe A Bulat; Alejandro Toro-Labbé; Tore Brinck; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2010-04-02       Impact factor: 1.810

2.  Sigma-hole bonding: molecules containing group VI atoms.

Authors:  Jane S Murray; Pat Lane; Timothy Clark; Peter Politzer
Journal:  J Mol Model       Date:  2007-07-24       Impact factor: 1.810

3.  Sigma-hole bonding between like atoms; a fallacy of atomic charges.

Authors:  Peter Politzer; Jane S Murray; Monica C Concha
Journal:  J Mol Model       Date:  2008-03-04       Impact factor: 1.810

4.  Halogen bonding: an electrostatically-driven highly directional noncovalent interaction.

Authors:  Peter Politzer; Jane S Murray; Timothy Clark
Journal:  Phys Chem Chem Phys       Date:  2010-06-22       Impact factor: 3.676

5.  Molecular surface electrostatic potentials and anesthetic activity.

Authors:  Gavin Trogdon; Jane S Murray; Monica C Concha; Peter Politzer
Journal:  J Mol Model       Date:  2006-09-22       Impact factor: 1.810

6.  Halogen bonding: the sigma-hole. Proceedings of "Modeling interactions in biomolecules II", Prague, September 5th-9th, 2005.

Authors:  Timothy Clark; Matthias Hennemann; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2006-08-23       Impact factor: 1.810

7.  Why are dimethyl sulfoxide and dimethyl sulfone such good solvents?

Authors:  Timothy Clark; Jane S Murray; Pat Lane; Peter Politzer
Journal:  J Mol Model       Date:  2008-05-06       Impact factor: 1.810

8.  Expansion of the sigma-hole concept.

Authors:  Jane S Murray; Pat Lane; Peter Politzer
Journal:  J Mol Model       Date:  2008-12-11       Impact factor: 1.810

9.  Neighboring group stabilization by sigma-holes.

Authors:  Richard A J O'Hair; Craig M Williams; Timothy Clark
Journal:  J Mol Model       Date:  2009-08-15       Impact factor: 1.810

10.  Br···O Complexes as Probes of Factors Affecting Halogen Bonding: Interactions of Bromobenzenes and Bromopyrimidines with Acetone.

Authors:  Kevin E Riley; Jane S Murray; Peter Politzer; Monica C Concha; Pavel Hobza
Journal:  J Chem Theory Comput       Date:  2008-12-18       Impact factor: 6.006

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  5 in total

1.  Quantum-mechanical investigation of tetrel bond characteristics based on the point-of-charge (PoC) approach.

Authors:  Mahmoud A A Ibrahim; Nayra A M Moussa; Mohamed E A Safy
Journal:  J Mol Model       Date:  2018-07-27       Impact factor: 1.810

2.  Trends in σ-hole strengths and interactions of F3MX molecules (M = C, Si, Ge and X = F, Cl, Br, I).

Authors:  Ashwini Bundhun; Ponnadurai Ramasami; Jane S Murray; Peter Politzer
Journal:  J Mol Model       Date:  2012-09-12       Impact factor: 1.810

3.  ETS-NOCV description of σ-hole bonding.

Authors:  Karol Dyduch; Mariusz P Mitoraj; Artur Michalak
Journal:  J Mol Model       Date:  2012-09-30       Impact factor: 1.810

4.  Modulating weak intramolecular interactions through the formation of beryllium bonds: complexes between squaric acid and BeH2.

Authors:  M Merced Montero-Campillo; Al Mokhtar Lamsabhi; Otilia Mó; Manuel Yáñez
Journal:  J Mol Model       Date:  2012-10-09       Impact factor: 1.810

5.  Substitution, cooperative, and solvent effects on π pnicogen bonds in the FH(2)P and FH(2)As complexes.

Authors:  Xiu-Lin An; Ran Li; Qing-Zhong Li; Xiao-Feng Liu; Wen-Zuo Li; Jian-Bo Cheng
Journal:  J Mol Model       Date:  2012-05-09       Impact factor: 1.810

  5 in total

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