Literature DB >> 1409682

Conformational substates in azurin.

D Ehrenstein1, G U Nienhaus.   

Abstract

Azurin is a small blue copper protein in the electron transfer chain of denitrifying bacteria. It forms a photolabile complex with nitric oxide (NO) at low temperatures. We studied the temperature dependence of the ligand binding equilibrium and the kinetics of the association reaction after photodissociation over a wide range of temperature (80-280 K) and time (10(-6)-10(2) s). The nonexponential rebinding below 200 K is independent of the NO concentration and is interpreted as internal recombination. The rebinding can be modeled with the Arrhenius law by using a single preexponential factor of 6.3 x 10(8) s-1 and a Gaussian distribution of enthalpy barriers centered at 23 kJ/mol with a width of 11 kJ/mol. Above 200 K, a slower, exponential rebinding process appears. The dependence of the kinetics on the NO concentration characterizes this reaction as bimolecular rebinding. The binding kinetics of NO to azurin show impressive analogies to the binding of carbon monoxide to myoglobin. We conclude that conformational substates occur not only in heme proteins but also in proteins with different active sites and secondary structures.

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Year:  1992        PMID: 1409682      PMCID: PMC50196          DOI: 10.1073/pnas.89.20.9681

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  Ligand binding to heme proteins: connection between dynamics and function.

Authors:  P J Steinbach; A Ansari; J Berendzen; D Braunstein; K Chu; B R Cowen; D Ehrenstein; H Frauenfelder; J B Johnson; D C Lamb
Journal:  Biochemistry       Date:  1991-04-23       Impact factor: 3.162

2.  A model of protein conformational substates.

Authors:  D L Stein
Journal:  Proc Natl Acad Sci U S A       Date:  1985-06       Impact factor: 11.205

3.  Correlated distributions in g and A tensors at a biologically active low-symmetry cupric site.

Authors: 
Journal:  Phys Rev A       Date:  1991-10-15       Impact factor: 3.140

4.  Inhomogeneous broadening in spectral bands of carbonmonoxymyoglobin. The connection between spectral and functional heterogeneity.

Authors:  P Ormos; A Ansari; D Braunstein; B R Cowen; H Frauenfelder; M K Hong; I E Iben; T B Sauke; P J Steinbach; R D Young
Journal:  Biophys J       Date:  1990-02       Impact factor: 4.033

5.  Linkage of functional and structural heterogeneity in proteins: dynamic hole burning in carboxymyoglobin.

Authors:  B F Campbell; M R Chance; J M Friedman
Journal:  Science       Date:  1987-10-16       Impact factor: 47.728

6.  Resolvability of fluorescence lifetime distributions using phase fluorometry.

Authors:  J R Alcala; E Gratton; F G Prendergast
Journal:  Biophys J       Date:  1987-04       Impact factor: 4.033

7.  Protein states and proteinquakes.

Authors:  A Ansari; J Berendzen; S F Bowne; H Frauenfelder; I E Iben; T B Sauke; E Shyamsunder; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

8.  Nanosecond flash photolysis study of carbon monoxide binding to the beta chain of hemoglobin Zürich [beta 63(E7)His leads to Arg].

Authors:  D D Dlott; H Frauenfelder; P Langer; H Roder; E E DiIorio
Journal:  Proc Natl Acad Sci U S A       Date:  1983-10       Impact factor: 11.205

9.  Structure of azurin from Alcaligenes denitrificans at 2.5 A resolution.

Authors:  G E Norris; B F Anderson; E N Baker
Journal:  J Mol Biol       Date:  1983-04-15       Impact factor: 5.469

10.  Normal coordinate analysis of the copper center of azurin and the assignment of its resonance Raman spectrum.

Authors:  T J Thamann; P Frank; L J Willis; T M Loehr
Journal:  Proc Natl Acad Sci U S A       Date:  1982-10       Impact factor: 11.205

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  11 in total

1.  Photodynamics of red fluorescent proteins studied by fluorescence correlation spectroscopy.

Authors:  Andreas Schenk; Sergey Ivanchenko; Carlheinz Röcker; Jörg Wiedenmann; G Ulrich Nienhaus
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

2.  Slaving: solvent fluctuations dominate protein dynamics and functions.

Authors:  P W Fenimore; H Frauenfelder; B H McMahon; F G Parak
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-20       Impact factor: 11.205

3.  Disentangling ligand migration and heme pocket relaxation in cytochrome P450cam.

Authors:  Catherine Tetreau; Liliane Mouawad; Samuel Murail; Patricia Duchambon; Yves Blouquit; Daniel Lavalette
Journal:  Biophys J       Date:  2004-10-15       Impact factor: 4.033

4.  Ligand migration and binding in the dimeric hemoglobin of Scapharca inaequivalvis.

Authors:  Karin Nienhaus; James E Knapp; Pasquale Palladino; William E Royer; G Ulrich Nienhaus
Journal:  Biochemistry       Date:  2007-11-15       Impact factor: 3.162

5.  Reaction of the Co(II)-substrate radical pair catalytic intermediate in coenzyme B12-dependent ethanolamine ammonia-lyase in frozen aqueous solution from 190 to 217 K.

Authors:  Chen Zhu; Kurt Warncke
Journal:  Biophys J       Date:  2008-09-19       Impact factor: 4.033

6.  Heterogeneity of protein substates visualized by spin-label EPR.

Authors:  Rita Guzzi; Rosa Bartucci; Derek Marsh
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

7.  Ligand binding to heme proteins: II. Transitions in the heme pocket of myoglobin.

Authors:  J R Mourant; D P Braunstein; K Chu; H Frauenfelder; G U Nienhaus; P Ormos; R D Young
Journal:  Biophys J       Date:  1993-10       Impact factor: 4.033

8.  Structural relaxation and nonexponential kinetics of CO-binding to horse myoglobin. Multiple flash photolysis experiments.

Authors:  F Post; W Doster; G Karvounis; M Settles
Journal:  Biophys J       Date:  1993-06       Impact factor: 4.033

9.  Two-dimensional distributions of activation enthalpy and entropy from kinetics by the maximum entropy method.

Authors:  P J Steinbach
Journal:  Biophys J       Date:  1996-03       Impact factor: 4.033

10.  Mössbauer spectroscopy on nonequilibrium states of myoglobin: a study of r-t relaxation.

Authors:  V E Prusakov; J Steyer; F G Parak
Journal:  Biophys J       Date:  1995-06       Impact factor: 4.033

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