Literature DB >> 1540692

Determination of rate distributions from kinetic experiments.

P J Steinbach1, K Chu, H Frauenfelder, J B Johnson, D C Lamb, G U Nienhaus, T B Sauke, R D Young.   

Abstract

Rate processes in proteins are often not adequately described by simple exponential kinetics. Instead of modeling the kinetics in the time domain, it can be advantageous to perform a numerical inversion leading to a rate distribution function f(lambda). The features observed in f(lambda) (number, positions, and shapes of peaks) can then be interpreted. We discuss different numerical techniques for obtaining rate distribution functions, with special emphasis on the maximum entropy method. Examples are given for the application of these techniques to flash photolysis data of heme proteins.

Mesh:

Substances:

Year:  1992        PMID: 1540692      PMCID: PMC1260237          DOI: 10.1016/S0006-3495(92)81830-1

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  16 in total

1.  Glassy behavior of a protein.

Authors: 
Journal:  Phys Rev Lett       Date:  1989-04-17       Impact factor: 9.161

2.  Ligand binding to heme proteins: connection between dynamics and function.

Authors:  P J Steinbach; A Ansari; J Berendzen; D Braunstein; K Chu; B R Cowen; D Ehrenstein; H Frauenfelder; J B Johnson; D C Lamb
Journal:  Biochemistry       Date:  1991-04-23       Impact factor: 3.162

3.  Conformational fluctuations and protein reactivity. Determination of the rate-constant spectrum and consequences in elementary biochemical processes.

Authors:  D Lavalette; C Tetreau; J C Brochon; A Livesey
Journal:  Eur J Biochem       Date:  1991-03-28

4.  Analyzing the distribution of decay constants in pulse-fluorimetry using the maximum entropy method.

Authors:  A K Livesey; J C Brochon
Journal:  Biophys J       Date:  1987-11       Impact factor: 4.033

5.  Tunneling in ligand binding to heme proteins.

Authors:  N Alberding; R H Austin; K W Beeson; S S Chan; L Eisenstein; H Frauenfelder; T M Nordlund
Journal:  Science       Date:  1976-06-04       Impact factor: 47.728

6.  Structural basis of hierarchical multiple substates of a protein. I: Introduction.

Authors:  T Noguti; N Go
Journal:  Proteins       Date:  1989

7.  Orientation of carbon monoxide and structure-function relationship in carbonmonoxymyoglobin.

Authors:  P Ormos; D Braunstein; H Frauenfelder; M K Hong; S L Lin; T B Sauke; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  1988-11       Impact factor: 11.205

8.  Protein states and proteinquakes.

Authors:  A Ansari; J Berendzen; S F Bowne; H Frauenfelder; I E Iben; T B Sauke; E Shyamsunder; R D Young
Journal:  Proc Natl Acad Sci U S A       Date:  1985-08       Impact factor: 11.205

9.  Nanosecond flash photolysis study of carbon monoxide binding to the beta chain of hemoglobin Zürich [beta 63(E7)His leads to Arg].

Authors:  D D Dlott; H Frauenfelder; P Langer; H Roder; E E DiIorio
Journal:  Proc Natl Acad Sci U S A       Date:  1983-10       Impact factor: 11.205

10.  Conformational substates and motions in myoglobin. External influences on structure and dynamics.

Authors:  M K Hong; D Braunstein; B R Cowen; H Frauenfelder; I E Iben; J R Mourant; P Ormos; R Scholl; A Schulte; P J Steinbach
Journal:  Biophys J       Date:  1990-08       Impact factor: 4.033

View more
  24 in total

1.  Kinetic evidence for three photolyzable taxonomic conformational substates in oxymyoglobin.

Authors:  Catherine Tetreau; Eugene Novikov; Martine Tourbez; Daniel Lavalette
Journal:  Biophys J       Date:  2002-04       Impact factor: 4.033

2.  Structural, dynamic, and energetic aspects of long-range electron transfer in photosynthetic reaction centers.

Authors:  Jan M Kriegl; G Ulrich Nienhaus
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-22       Impact factor: 11.205

3.  Competition with xenon elicits ligand migration and escape pathways in myoglobin.

Authors:  Catherine Tetreau; Yves Blouquit; Eugene Novikov; Eric Quiniou; Daniel Lavalette
Journal:  Biophys J       Date:  2004-01       Impact factor: 4.033

4.  Conformational substates in azurin.

Authors:  D Ehrenstein; G U Nienhaus
Journal:  Proc Natl Acad Sci U S A       Date:  1992-10-15       Impact factor: 11.205

5.  Markov processes follow from the principle of maximum caliber.

Authors:  Hao Ge; Steve Pressé; Kingshuk Ghosh; Ken A Dill
Journal:  J Chem Phys       Date:  2012-02-14       Impact factor: 3.488

6.  Spectroscopic evidence for conformational relaxation in myoglobin.

Authors:  G U Nienhaus; J R Mourant; H Frauenfelder
Journal:  Proc Natl Acad Sci U S A       Date:  1992-04-01       Impact factor: 11.205

7.  Modulation of reactivity and conformation within the T-quaternary state of human hemoglobin: the combined use of mutagenesis and sol-gel encapsulation.

Authors:  Uri Samuni; Camille J Roche; David Dantsker; Laura J Juszczak; Joel M Friedman
Journal:  Biochemistry       Date:  2006-03-07       Impact factor: 3.162

8.  A two-dimensional view of the folding energy landscape of cytochrome c.

Authors:  James H Werner; Raymond Joggerst; R Brian Dyer; Peter M Goodwin
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-14       Impact factor: 11.205

9.  Protein dynamics control of electron transfer in photosynthetic reaction centers from Rps. sulfoviridis.

Authors:  E S Medvedev; A I Kotelnikov; A V Barinov; B L Psikha; J M Ortega; D M Popović; A A Stuchebrukhov
Journal:  J Phys Chem B       Date:  2008-02-20       Impact factor: 2.991

10.  Extracting conformational memory from single-molecule kinetic data.

Authors:  Steve Pressé; Julian Lee; Ken A Dill
Journal:  J Phys Chem B       Date:  2013-01-09       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.