Literature DB >> 22459407

Revisiting higher-order and large-scale chromatin organization.

Qian Bian1, Andrew S Belmont.   

Abstract

The past several years has seen increasing appreciation for plasticity of higher-level chromatin folding. Four distinct '30nm' chromatin fiber structures have been identified, while new in situ imaging approaches have questioned the universality of 30nm chromatin fibers as building blocks for chromosome folding in vivo. 3C-based approaches have provided a non-microscopic, genomic approach to investigating chromosome folding while uncovering a plethora of long-distance cis interactions difficult to accommodate in traditional hierarchical chromatin folding models. Recent microscopy based studies have suggested complex topologies co-existing within linear interphase chromosome structures. These results call for a reappraisal of traditional models of higher-level chromatin folding.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22459407      PMCID: PMC3372662          DOI: 10.1016/j.ceb.2012.03.003

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  58 in total

1.  The nucleosome surface regulates chromatin compaction and couples it with transcriptional repression.

Authors:  Jiansheng Zhou; Jun Y Fan; Danny Rangasamy; David J Tremethick
Journal:  Nat Struct Mol Biol       Date:  2007-10-28       Impact factor: 15.369

2.  Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ.

Authors:  Mikhail Eltsov; Kirsty M Maclellan; Kazuhiro Maeshima; Achilleas S Frangakis; Jacques Dubochet
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-08       Impact factor: 11.205

3.  Determinants of histone H4 N-terminal domain function during nucleosomal array oligomerization: roles of amino acid sequence, domain length, and charge density.

Authors:  Steven J McBryant; Joshua Klonoski; Troy C Sorensen; Sarah S Norskog; Sere Williams; Michael G Resch; James A Toombs; Sarah E Hobdey; Jeffrey C Hansen
Journal:  J Biol Chem       Date:  2009-04-24       Impact factor: 5.157

4.  30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction.

Authors:  Philip J J Robinson; Woojin An; Andrew Routh; Fabrizio Martino; Lynda Chapman; Robert G Roeder; Daniela Rhodes
Journal:  J Mol Biol       Date:  2008-04-29       Impact factor: 5.469

5.  The H4 tail domain participates in intra- and internucleosome interactions with protein and DNA during folding and oligomerization of nucleosome arrays.

Authors:  Pu-Yeh Kan; Tamara L Caterino; Jeffrey J Hayes
Journal:  Mol Cell Biol       Date:  2008-11-10       Impact factor: 4.272

6.  Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure.

Authors:  Andrew Routh; Sara Sandin; Daniela Rhodes
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-26       Impact factor: 11.205

7.  Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development.

Authors:  Ralph Stadhouders; Supat Thongjuea; Charlotte Andrieu-Soler; Robert-Jan Palstra; Jan Christian Bryne; Anita van den Heuvel; Mary Stevens; Ernie de Boer; Christel Kockx; Antoine van der Sloot; Mirjam van den Hout; Wilfred van Ijcken; Dirk Eick; Boris Lenhard; Frank Grosveld; Eric Soler
Journal:  EMBO J       Date:  2011-12-13       Impact factor: 11.598

8.  In vivo immunogold labeling confirms large-scale chromatin folding motifs.

Authors:  Igor Kireev; Margot Lakonishok; Wenqiu Liu; Vishwas N Joshi; Rick Powell; Andrew S Belmont
Journal:  Nat Methods       Date:  2008-03-16       Impact factor: 28.547

9.  Large-scale chromatin structure of inducible genes: transcription on a condensed, linear template.

Authors:  Yan Hu; Igor Kireev; Matt Plutz; Nazanin Ashourian; Andrew S Belmont
Journal:  J Cell Biol       Date:  2009-04-06       Impact factor: 10.539

10.  Chromatin conformation signatures of cellular differentiation.

Authors:  James Fraser; Mathieu Rousseau; Solomon Shenker; Maria A Ferraiuolo; Yoshihide Hayashizaki; Mathieu Blanchette; Josée Dostie
Journal:  Genome Biol       Date:  2009-04-19       Impact factor: 13.583

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  28 in total

1.  The genome in space and time: does form always follow function? How does the spatial and temporal organization of a eukaryotic genome reflect and influence its functions?

Authors:  Zhijun Duan; Carl Anthony Blau
Journal:  Bioessays       Date:  2012-07-06       Impact factor: 4.345

Review 2.  Coming to terms with chromatin structure.

Authors:  Liron Even-Faitelson; Vahideh Hassan-Zadeh; Zahra Baghestani; David P Bazett-Jones
Journal:  Chromosoma       Date:  2015-07-30       Impact factor: 4.316

Review 3.  Biological implications and regulatory mechanisms of long-range chromosomal interactions.

Authors:  Zong Wei; David Huang; Fan Gao; Wen-Hsuan Chang; Woojin An; Gerhard A Coetzee; Kai Wang; Wange Lu
Journal:  J Biol Chem       Date:  2013-06-18       Impact factor: 5.157

Review 4.  Chromatin organization and transcriptional regulation.

Authors:  Michael R Hübner; Mélanie A Eckersley-Maslin; David L Spector
Journal:  Curr Opin Genet Dev       Date:  2012-12-24       Impact factor: 5.578

Review 5.  Large-scale chromatin organization: the good, the surprising, and the still perplexing.

Authors:  Andrew S Belmont
Journal:  Curr Opin Cell Biol       Date:  2013-11-13       Impact factor: 8.382

Review 6.  Histone variants: the tricksters of the chromatin world.

Authors:  Catherine Volle; Yamini Dalal
Journal:  Curr Opin Genet Dev       Date:  2014-01-24       Impact factor: 5.578

7.  The histone variant H2A.W defines heterochromatin and promotes chromatin condensation in Arabidopsis.

Authors:  Ramesh Yelagandula; Hume Stroud; Sarah Holec; Keda Zhou; Suhua Feng; Xuehua Zhong; Uma M Muthurajan; Xin Nie; Tomokazu Kawashima; Martin Groth; Karolin Luger; Steven E Jacobsen; Frédéric Berger
Journal:  Cell       Date:  2014-07-03       Impact factor: 41.582

8.  Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains.

Authors:  Chunhui Hou; Li Li; Zhaohui S Qin; Victor G Corces
Journal:  Mol Cell       Date:  2012-10-04       Impact factor: 17.970

9.  Chromatin structure outside and inside the nucleus.

Authors:  Rodolfo Ghirlando; Gary Felsenfeld
Journal:  Biopolymers       Date:  2013-04       Impact factor: 2.505

10.  Structural organization of very small chromosomes: study on a single-celled evolutionary distant eukaryote Giardia intestinalis.

Authors:  Pavla Tůmová; Magdalena Uzlíková; Gerhard Wanner; Eva Nohýnková
Journal:  Chromosoma       Date:  2014-08-30       Impact factor: 4.316

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