Literature DB >> 26223534

Coming to terms with chromatin structure.

Liron Even-Faitelson1, Vahideh Hassan-Zadeh2, Zahra Baghestani1, David P Bazett-Jones3.   

Abstract

Chromatin, once thought to serve only as a means to package DNA, is now recognized as a major regulator of gene activity. As a result of the wide range of methods used to describe the numerous levels of chromatin organization, the terminology that has emerged to describe these organizational states is often imprecise and sometimes misleading. In this review, we discuss our current understanding of chromatin architecture and propose terms to describe the various biochemical and structural states of chromatin.

Keywords:  Accessibility; Chromatin; Compaction; Heterochromatin; Higher order chromatin organization; Structure

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Substances：

Year:  2015        PMID： 26223534     DOI： 10.1007/s00412-015-0534-9

Source DB:  PubMed          Journal:  Chromosoma        ISSN： 0009-5915            Impact factor:   4.316


  131 in total

1.  Electron spectroscopic imaging of chromatin.

Authors:  D P Bazett-Jones; M J Hendzel
Journal:  Methods       Date:  1999-02       Impact factor: 3.608

2.  Looping and interaction between hypersensitive sites in the active beta-globin locus.

Authors:  Bas Tolhuis; Robert Jan Palstra; Erik Splinter; Frank Grosveld; Wouter de Laat
Journal:  Mol Cell       Date:  2002-12       Impact factor: 17.970

3.  Transcription on nucleosomal templates by RNA polymerase II in vitro: inhibition of elongation with enhancement of sequence-specific pausing.

Authors:  M G Izban; D S Luse
Journal:  Genes Dev       Date:  1991-04       Impact factor: 11.361

4.  Mitotic chromosome condensation.

Authors:  D Koshland; A Strunnikov
Journal:  Annu Rev Cell Dev Biol       Date:  1996       Impact factor: 13.827

Review 5.  Absence of a simple code: how transcription factors read the genome.

Authors:  Matthew Slattery; Tianyin Zhou; Lin Yang; Ana Carolina Dantas Machado; Raluca Gordân; Remo Rohs
Journal:  Trends Biochem Sci       Date:  2014-08-14       Impact factor: 13.807

6.  A random-walk/giant-loop model for interphase chromosomes.

Authors:  R K Sachs; G van den Engh; B Trask; H Yokota; J E Hearst
Journal:  Proc Natl Acad Sci U S A       Date:  1995-03-28       Impact factor: 11.205

7.  A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors:  Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal:  Cell       Date:  2014-12-11       Impact factor: 41.582

8.  Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription.

Authors:  Séverine Chambeyron; Wendy A Bickmore
Journal:  Genes Dev       Date:  2004-05-15       Impact factor: 11.361

Review 9.  The many faces of histone lysine methylation.

Authors:  Monika Lachner; Thomas Jenuwein
Journal:  Curr Opin Cell Biol       Date:  2002-06       Impact factor: 8.382

10.  Nucleosomes inhibit both transcriptional initiation and elongation by RNA polymerase III in vitro.

Authors:  R H Morse
Journal:  EMBO J       Date:  1989-08       Impact factor: 11.598
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  11 in total

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Review 2.  Dynamic Changes in Plant Nuclear Organization in Response to Environmental and Developmental Signals.

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Journal:  Plant Physiol       Date:  2017-07-24       Impact factor: 8.340

3.  DNA methylation is dispensable for changes in global chromatin architecture but required for chromocentre formation in early stem cell differentiation.

Authors:  Vahideh Hassan-Zadeh; Peter Rugg-Gunn; David P Bazett-Jones
Journal:  Chromosoma       Date:  2017-01-13       Impact factor: 4.316

4.  Tethered MNase Structure Probing as Versatile Technique for Analyzing RNPs Using Tagging Cassettes for Homologous Recombination in Saccharomyces cerevisiae.

Authors:  Fabian Teubl; Katrin Schwank; Uli Ohmayer; Joachim Griesenbeck; Herbert Tschochner; Philipp Milkereit
Journal:  Methods Mol Biol       Date:  2022

Review 5.  Interphase epichromatin: last refuge for the 30-nm chromatin fiber?

Authors:  Peng Xu; Julia Mahamid; Marco Dombrowski; Wolfgang Baumeister; Ada L Olins; Donald E Olins
Journal:  Chromosoma       Date:  2021-06-05       Impact factor: 4.316

Review 6.  Epichromatin and chromomeres: a 'fuzzy' perspective.

Authors:  Donald E Olins; Ada L Olins
Journal:  Open Biol       Date:  2018-06       Impact factor: 6.411

7.  The histone chaperone DAXX maintains the structural organization of heterochromatin domains.

Authors:  Lindsy M Rapkin; Kashif Ahmed; Stanimir Dulev; Ren Li; Hiroshi Kimura; Alexander M Ishov; David P Bazett-Jones
Journal:  Epigenetics Chromatin       Date:  2015-10-21       Impact factor: 4.954

8.  Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure.

Authors:  Ana-Maria Florescu; Pierre Therizols; Angelo Rosa
Journal:  PLoS Comput Biol       Date:  2016-06-13       Impact factor: 4.475

Review 9.  Epigenetics and Cellular Metabolism.

Authors:  Wenyi Xu; Fengzhong Wang; Zhongsheng Yu; Fengjiao Xin
Journal:  Genet Epigenet       Date:  2016-09-25

10.  Quantitative imaging of chromatin decompaction in living cells.

Authors:  Elisa Dultz; Roberta Mancini; Guido Polles; Pascal Vallotton; Frank Alber; Karsten Weis
Journal:  Mol Biol Cell       Date:  2018-05-17       Impact factor: 4.138
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