Literature DB >> 22157820

Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development.

Ralph Stadhouders1, Supat Thongjuea, Charlotte Andrieu-Soler, Robert-Jan Palstra, Jan Christian Bryne, Anita van den Heuvel, Mary Stevens, Ernie de Boer, Christel Kockx, Antoine van der Sloot, Mirjam van den Hout, Wilfred van Ijcken, Dirk Eick, Boris Lenhard, Frank Grosveld, Eric Soler.   

Abstract

The key haematopoietic regulator Myb is essential for coordinating proliferation and differentiation. ChIP-Sequencing and Chromosome Conformation Capture (3C)-Sequencing were used to characterize the structural and protein-binding dynamics of the Myb locus during erythroid differentiation. In proliferating cells expressing Myb, enhancers within the Myb-Hbs1l intergenic region were shown to form an active chromatin hub (ACH) containing the Myb promoter and first intron. This first intron was found to harbour the transition site from transcription initiation to elongation, which takes place around a conserved CTCF site. Upon erythroid differentiation, Myb expression is downregulated and the ACH destabilized. We propose a model for Myb activation by distal enhancers dynamically bound by KLF1 and the GATA1/TAL1/LDB1 complex, which primarily function as a transcription elongation element through chromatin looping.

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Year:  2011        PMID: 22157820      PMCID: PMC3280550          DOI: 10.1038/emboj.2011.450

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  58 in total

1.  Exchange of GATA factors mediates transitions in looped chromatin organization at a developmentally regulated gene locus.

Authors:  Huie Jing; Christopher R Vakoc; Lei Ying; Sean Mandat; Hongxin Wang; Xingwu Zheng; Gerd A Blobel
Journal:  Mol Cell       Date:  2008-02-01       Impact factor: 17.970

Review 2.  MYB function in normal and cancer cells.

Authors:  Robert G Ramsay; Thomas J Gonda
Journal:  Nat Rev Cancer       Date:  2008-07       Impact factor: 60.716

3.  Histone modifications at human enhancers reflect global cell-type-specific gene expression.

Authors:  Nathaniel D Heintzman; Gary C Hon; R David Hawkins; Pouya Kheradpour; Alexander Stark; Lindsey F Harp; Zhen Ye; Leonard K Lee; Rhona K Stuart; Christina W Ching; Keith A Ching; Jessica E Antosiewicz-Bourget; Hui Liu; Xinmin Zhang; Roland D Green; Victor V Lobanenkov; Ron Stewart; James A Thomson; Gregory E Crawford; Manolis Kellis; Bing Ren
Journal:  Nature       Date:  2009-03-18       Impact factor: 49.962

4.  DNA polymorphisms at the BCL11A, HBS1L-MYB, and beta-globin loci associate with fetal hemoglobin levels and pain crises in sickle cell disease.

Authors:  Guillaume Lettre; Vijay G Sankaran; Marcos André C Bezerra; Aderson S Araújo; Manuela Uda; Serena Sanna; Antonio Cao; David Schlessinger; Fernando F Costa; Joel N Hirschhorn; Stuart H Orkin
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-30       Impact factor: 11.205

5.  Failure of terminal erythroid differentiation in EKLF-deficient mice is associated with cell cycle perturbation and reduced expression of E2F2.

Authors:  Andre M Pilon; Murat O Arcasoy; Holly K Dressman; Serena E Vayda; Yelena D Maksimova; Jose I Sangerman; Patrick G Gallagher; David M Bodine
Journal:  Mol Cell Biol       Date:  2008-10-13       Impact factor: 4.272

6.  ChIP-seq accurately predicts tissue-specific activity of enhancers.

Authors:  Axel Visel; Matthew J Blow; Zirong Li; Tao Zhang; Jennifer A Akiyama; Amy Holt; Ingrid Plajzer-Frick; Malak Shoukry; Crystal Wright; Feng Chen; Veena Afzal; Bing Ren; Edward M Rubin; Len A Pennacchio
Journal:  Nature       Date:  2009-02-12       Impact factor: 49.962

7.  MiR-150 controls B cell differentiation by targeting the transcription factor c-Myb.

Authors:  Changchun Xiao; Dinis Pedro Calado; Gunther Galler; To-Ha Thai; Heide Christine Patterson; Jing Wang; Nikolaus Rajewsky; Timothy P Bender; Klaus Rajewsky
Journal:  Cell       Date:  2007-10-05       Impact factor: 41.582

8.  EKLF/KLF1 controls cell cycle entry via direct regulation of E2f2.

Authors:  Michael R Tallack; Janelle R Keys; Patrick O Humbert; Andrew C Perkins
Journal:  J Biol Chem       Date:  2009-05-20       Impact factor: 5.157

9.  Intergenic variants of HBS1L-MYB are responsible for a major quantitative trait locus on chromosome 6q23 influencing fetal hemoglobin levels in adults.

Authors:  Swee Lay Thein; Stephan Menzel; Xu Peng; Steve Best; Jie Jiang; James Close; Nicholas Silver; Ageliki Gerovasilli; Chen Ping; Masao Yamaguchi; Karin Wahlberg; Pinar Ulug; Tim D Spector; Chad Garner; Fumihiko Matsuda; Martin Farrall; Mark Lathrop
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-25       Impact factor: 11.205

10.  MicroRNA-mediated control of cell fate in megakaryocyte-erythrocyte progenitors.

Authors:  Jun Lu; Shangqin Guo; Benjamin L Ebert; Hao Zhang; Xiao Peng; Jocelyn Bosco; Jennifer Pretz; Rita Schlanger; Judy Y Wang; Raymond H Mak; David M Dombkowski; Frederic I Preffer; David T Scadden; Todd R Golub
Journal:  Dev Cell       Date:  2008-06       Impact factor: 12.270

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  70 in total

Review 1.  Transcription regulation by distal enhancers: who's in the loop?

Authors:  Ralph Stadhouders; Anita van den Heuvel; Petros Kolovos; Ruud Jorna; Kris Leslie; Frank Grosveld; Eric Soler
Journal:  Transcription       Date:  2012-07-01

2.  The LDB1 Complex Co-opts CTCF for Erythroid Lineage-Specific Long-Range Enhancer Interactions.

Authors:  Jongjoo Lee; Ivan Krivega; Ryan K Dale; Ann Dean
Journal:  Cell Rep       Date:  2017-06-20       Impact factor: 9.423

3.  Dissection of the Major Hematopoietic Quantitative Trait Locus in Chromosome 6q23.3 Identifies miR-3662 as a Player in Hematopoiesis and Acute Myeloid Leukemia.

Authors:  Sophia E Maharry; Christopher J Walker; Sandya Liyanarachchi; Sujay Mehta; Mitra Patel; Maryam A Bainazar; Xiaomeng Huang; Malori A Lankenau; Kevin W Hoag; Parvathi Ranganathan; Ramiro Garzon; James S Blachly; Denis C Guttridge; Clara D Bloomfield; Albert de la Chapelle; Ann-Kathrin Eisfeld
Journal:  Cancer Discov       Date:  2016-06-27       Impact factor: 39.397

4.  Dynamic CTCF binding directly mediates interactions among cis-regulatory elements essential for hematopoiesis.

Authors:  Qian Qi; Li Cheng; Xing Tang; Yanghua He; Yichao Li; Tiffany Yee; Dewan Shrestha; Ruopeng Feng; Peng Xu; Xin Zhou; Shondra Pruett-Miller; Ross C Hardison; Mitchell J Weiss; Yong Cheng
Journal:  Blood       Date:  2021-03-11       Impact factor: 22.113

5.  The switch from fetal to adult hemoglobin.

Authors:  Vijay G Sankaran; Stuart H Orkin
Journal:  Cold Spring Harb Perspect Med       Date:  2013-01-01       Impact factor: 6.915

6.  Multiplexed chromosome conformation capture sequencing for rapid genome-scale high-resolution detection of long-range chromatin interactions.

Authors:  Ralph Stadhouders; Petros Kolovos; Rutger Brouwer; Jessica Zuin; Anita van den Heuvel; Christel Kockx; Robert-Jan Palstra; Kerstin S Wendt; Frank Grosveld; Wilfred van Ijcken; Eric Soler
Journal:  Nat Protoc       Date:  2013-02-14       Impact factor: 13.491

7.  Ldb1-nucleated transcription complexes function as primary mediators of global erythroid gene activation.

Authors:  LiQi Li; Johannes Freudenberg; Kairong Cui; Ryan Dale; Sang-Hyun Song; Ann Dean; Keji Zhao; Raja Jothi; Paul E Love
Journal:  Blood       Date:  2013-04-22       Impact factor: 22.113

Review 8.  EKLF/KLF1, a tissue-restricted integrator of transcriptional control, chromatin remodeling, and lineage determination.

Authors:  Yvette Y Yien; James J Bieker
Journal:  Mol Cell Biol       Date:  2012-10-22       Impact factor: 4.272

9.  Disruption of the Hbs1l-Myb locus causes hereditary persistence of fetal hemoglobin in a mouse model.

Authors:  Mikiko Suzuki; Hiromi Yamazaki; Harumi Y Mukai; Hozumi Motohashi; Lihong Shi; Osamu Tanabe; James Douglas Engel; Masayuki Yamamoto
Journal:  Mol Cell Biol       Date:  2013-02-19       Impact factor: 4.272

Review 10.  Ldb1 complexes: the new master regulators of erythroid gene transcription.

Authors:  Paul E Love; Claude Warzecha; LiQi Li
Journal:  Trends Genet       Date:  2013-11-27       Impact factor: 11.639

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