Literature DB >> 24463272

Histone variants: the tricksters of the chromatin world.

Catherine Volle1, Yamini Dalal2.   

Abstract

The eukaryotic genome exists in vivo at an equimolar ratio with histones, thus forming a polymer composed of DNA and histone proteins. Each nucleosomal unit in this polymer provides versatile capabilities and dynamic range. Substitutions of the individual components of the histone core with structurally distinct histone variants and covalent modifications alter the local fabric of the chromatin fiber, resulting in epigenetic changes that can be regulated by the cell. In this review, we highlight recent advances in the study of histone variant structure, assembly, and inheritance, their influence on nucleosome positioning, and their cumulative effect upon gene expression, DNA repair and the progression of disease. We also highlight fundamental questions that remain unanswered regarding the behavior of histone variants and their influence on cellular function in the normal and diseased states. Published by Elsevier Ltd.

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Year:  2014        PMID: 24463272      PMCID: PMC4035381          DOI: 10.1016/j.gde.2013.11.006

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  44 in total

1.  Structure-based identification of new high-affinity nucleosome binding sequences.

Authors:  Federica Battistini; Christopher A Hunter; Irene K Moore; Jonathan Widom
Journal:  J Mol Biol       Date:  2012-04-01       Impact factor: 5.469

2.  Dynamical modeling of three-dimensional genome organization in interphase budding yeast.

Authors:  Naoko Tokuda; Tomoki P Terada; Masaki Sasai
Journal:  Biophys J       Date:  2012-01-18       Impact factor: 4.033

3.  Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma.

Authors:  Jeremy Schwartzentruber; Andrey Korshunov; Xiao-Yang Liu; David T W Jones; Elke Pfaff; Karine Jacob; Dominik Sturm; Adam M Fontebasso; Dong-Anh Khuong Quang; Martje Tönjes; Volker Hovestadt; Steffen Albrecht; Marcel Kool; Andre Nantel; Carolin Konermann; Anders Lindroth; Natalie Jäger; Tobias Rausch; Marina Ryzhova; Jan O Korbel; Thomas Hielscher; Peter Hauser; Miklos Garami; Almos Klekner; Laszlo Bognar; Martin Ebinger; Martin U Schuhmann; Wolfram Scheurlen; Arnulf Pekrun; Michael C Frühwald; Wolfgang Roggendorf; Christoph Kramm; Matthias Dürken; Jeffrey Atkinson; Pierre Lepage; Alexandre Montpetit; Magdalena Zakrzewska; Krzystof Zakrzewski; Pawel P Liberski; Zhifeng Dong; Peter Siegel; Andreas E Kulozik; Marc Zapatka; Abhijit Guha; David Malkin; Jörg Felsberg; Guido Reifenberger; Andreas von Deimling; Koichi Ichimura; V Peter Collins; Hendrik Witt; Till Milde; Olaf Witt; Cindy Zhang; Pedro Castelo-Branco; Peter Lichter; Damien Faury; Uri Tabori; Christoph Plass; Jacek Majewski; Stefan M Pfister; Nada Jabado
Journal:  Nature       Date:  2012-01-29       Impact factor: 49.962

4.  Cell-cycle-dependent structural transitions in the human CENP-A nucleosome in vivo.

Authors:  Minh Bui; Emilios K Dimitriadis; Christian Hoischen; Eunkyung An; Delphine Quénet; Sindy Giebe; Aleksandra Nita-Lazar; Stephan Diekmann; Yamini Dalal
Journal:  Cell       Date:  2012-07-20       Impact factor: 41.582

Review 5.  Revisiting higher-order and large-scale chromatin organization.

Authors:  Qian Bian; Andrew S Belmont
Journal:  Curr Opin Cell Biol       Date:  2012-03-27       Impact factor: 8.382

Review 6.  Chromatin structure as a mediator of aging.

Authors:  Jason Feser; Jessica Tyler
Journal:  FEBS Lett       Date:  2010-11-16       Impact factor: 4.124

7.  A packing mechanism for nucleosome organization reconstituted across a eukaryotic genome.

Authors:  Zhenhai Zhang; Christian J Wippo; Megha Wal; Elissa Ward; Philipp Korber; B Franklin Pugh
Journal:  Science       Date:  2011-05-20       Impact factor: 47.728

Review 8.  Functional evolution of bacterial histone-like HU proteins.

Authors:  Anne Grove
Journal:  Curr Issues Mol Biol       Date:  2010-05-20       Impact factor: 2.081

9.  H2A.Z.2.2 is an alternatively spliced histone H2A.Z variant that causes severe nucleosome destabilization.

Authors:  Clemens Bönisch; Katrin Schneider; Sebastian Pünzeler; Sonja M Wiedemann; Christina Bielmeier; Marco Bocola; H Christian Eberl; Wolfgang Kuegel; Jürgen Neumann; Elisabeth Kremmer; Heinrich Leonhardt; Matthias Mann; Jens Michaelis; Lothar Schermelleh; Sandra B Hake
Journal:  Nucleic Acids Res       Date:  2012-03-29       Impact factor: 16.971

10.  Chromosomes without a 30-nm chromatin fiber.

Authors:  Yasumasa Joti; Takaaki Hikima; Yoshinori Nishino; Fukumi Kamada; Saera Hihara; Hideaki Takata; Tetsuya Ishikawa; Kazuhiro Maeshima
Journal:  Nucleus       Date:  2012-07-31       Impact factor: 4.197

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  14 in total

Review 1.  Histone-modifying enzymes, histone modifications and histone chaperones in nucleosome assembly: Lessons learned from Rtt109 histone acetyltransferases.

Authors:  Jayme L Dahlin; Xiaoyue Chen; Michael A Walters; Zhiguo Zhang
Journal:  Crit Rev Biochem Mol Biol       Date:  2014-11-03       Impact factor: 8.250

Review 2.  An evolving view of epigenetic complexity in the brain.

Authors:  Irfan A Qureshi; Mark F Mehler
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-09-26       Impact factor: 6.237

3.  The histone variant MacroH2A1 regulates target gene expression in part by recruiting the transcriptional coregulator PELP1.

Authors:  Kristine M Hussey; Hongshan Chen; Christine Yang; Eugene Park; Nasun Hah; Hediye Erdjument-Bromage; Paul Tempst; Matthew J Gamble; W Lee Kraus
Journal:  Mol Cell Biol       Date:  2014-04-21       Impact factor: 4.272

Review 4.  Epigenetic mechanisms underlying nervous system diseases.

Authors:  Irfan A Qureshi; Mark F Mehler
Journal:  Handb Clin Neurol       Date:  2018

5.  Histone variants H3.3 and H2A.Z/H3.3 facilitate excision of uracil from nucleosome core particles.

Authors:  Chuxuan Li; Katelyn L Rioux; Sarah Delaney
Journal:  DNA Repair (Amst)       Date:  2022-06-12

Review 6.  Chromatin Remodelers: From Function to Dysfunction.

Authors:  Gernot Längst; Laura Manelyte
Journal:  Genes (Basel)       Date:  2015-06-12       Impact factor: 4.096

Review 7.  Footprints of the sun: memory of UV and light stress in plants.

Authors:  Ralf Müller-Xing; Qian Xing; Justin Goodrich
Journal:  Front Plant Sci       Date:  2014-09-16       Impact factor: 5.753

8.  Crystal structure and stable property of the cancer-associated heterotypic nucleosome containing CENP-A and H3.3.

Authors:  Yasuhiro Arimura; Kazuyoshi Shirayama; Naoki Horikoshi; Risa Fujita; Hiroyuki Taguchi; Wataru Kagawa; Tatsuo Fukagawa; Geneviève Almouzni; Hitoshi Kurumizaka
Journal:  Sci Rep       Date:  2014-11-19       Impact factor: 4.379

9.  The histone variant H2A.X is a regulator of the epithelial-mesenchymal transition.

Authors:  Urbain Weyemi; Christophe E Redon; Rohini Choudhuri; Towqir Aziz; Daisuke Maeda; Myriem Boufraqech; Palak R Parekh; Taresh K Sethi; Manjula Kasoji; Natalie Abrams; Anand Merchant; Vinodh N Rajapakse; William M Bonner
Journal:  Nat Commun       Date:  2016-02-15       Impact factor: 14.919

10.  Structural and biochemical analyses of monoubiquitinated human histones H2B and H4.

Authors:  Shinichi Machida; Satoshi Sekine; Yuuki Nishiyama; Naoki Horikoshi; Hitoshi Kurumizaka
Journal:  Open Biol       Date:  2016-06       Impact factor: 6.411

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