Literature DB >> 18653199

30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction.

Philip J J Robinson1, Woojin An, Andrew Routh, Fabrizio Martino, Lynda Chapman, Robert G Roeder, Daniela Rhodes.   

Abstract

The mechanism by which chromatin is decondensed to permit access to DNA is largely unknown. Here, using a model nucleosome array reconstituted from recombinant histone octamers, we have defined the relative contribution of the individual histone octamer N-terminal tails as well as the effect of a targeted histone tail acetylation on the compaction state of the 30 nm chromatin fiber. This study goes beyond previous studies as it is based on a nucleosome array that is very long (61 nucleosomes) and contains a stoichiometric concentration of bound linker histone, which is essential for the formation of the 30 nm chromatin fiber. We find that compaction is regulated in two steps: Introduction of H4 acetylated to 30% on K16 inhibits compaction to a greater degree than deletion of the H4 N-terminal tail. Further decompaction is achieved by removal of the linker histone.

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Year:  2008        PMID: 18653199      PMCID: PMC3870898          DOI: 10.1016/j.jmb.2008.04.050

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  54 in total

1.  Transcription. New insights into an old modification.

Authors:  C A Mizzen; C D Allis
Journal:  Science       Date:  2000-09-29       Impact factor: 47.728

2.  Activation of transcription through histone H4 acetylation by MOF, an acetyltransferase essential for dosage compensation in Drosophila.

Authors:  A Akhtar; P B Becker
Journal:  Mol Cell       Date:  2000-02       Impact factor: 17.970

3.  Chromatin fiber folding: requirement for the histone H4 N-terminal tail.

Authors:  Benedetta Dorigo; Thomas Schalch; Kerstin Bystricky; Timothy J Richmond
Journal:  J Mol Biol       Date:  2003-03-14       Impact factor: 5.469

4.  Functional integration of the histone acetyltransferase MOF into the dosage compensation complex.

Authors:  Violette Morales; Tobias Straub; Martin F Neumann; Gabrielle Mengus; Asifa Akhtar; Peter B Becker
Journal:  EMBO J       Date:  2004-05-13       Impact factor: 11.598

Review 5.  Reading protein modifications with interaction domains.

Authors:  Bruce T Seet; Ivan Dikic; Ming-Ming Zhou; Tony Pawson
Journal:  Nat Rev Mol Cell Biol       Date:  2006-07       Impact factor: 94.444

6.  EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure.

Authors:  Philip J J Robinson; Louise Fairall; Van A T Huynh; Daniela Rhodes
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-14       Impact factor: 11.205

7.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

Review 8.  Structure of chromatin.

Authors:  R D Kornberg
Journal:  Annu Rev Biochem       Date:  1977       Impact factor: 23.643

9.  Action of micrococcal nuclease on chromatin and the location of histone H1.

Authors:  M Noll; R D Kornberg
Journal:  J Mol Biol       Date:  1977-01-25       Impact factor: 5.469

10.  Structure of the 300A chromatin filament: X-ray diffraction from oriented samples.

Authors:  J Widom; A Klug
Journal:  Cell       Date:  1985-11       Impact factor: 41.582

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  142 in total

1.  Acetylation of core histones in response to HDAC inhibitors is diminished in mitotic HeLa cells.

Authors:  Jason S Patzlaff; Edith Terrenoire; Bryan M Turner; William C Earnshaw; James R Paulson
Journal:  Exp Cell Res       Date:  2010-05-07       Impact factor: 3.905

Review 2.  Toward convergence of experimental studies and theoretical modeling of the chromatin fiber.

Authors:  Tamar Schlick; Jeff Hayes; Sergei Grigoryev
Journal:  J Biol Chem       Date:  2011-12-07       Impact factor: 5.157

3.  Internucleosomal interactions mediated by histone tails allow distant communication in chromatin.

Authors:  Olga I Kulaeva; Guohui Zheng; Yury S Polikanov; Andrew V Colasanti; Nicolas Clauvelin; Swagatam Mukhopadhyay; Anirvan M Sengupta; Vasily M Studitsky; Wilma K Olson
Journal:  J Biol Chem       Date:  2012-04-19       Impact factor: 5.157

4.  Mutagenesis of pairwise combinations of histone amino-terminal tails reveals functional redundancy in budding yeast.

Authors:  Jung-Ae Kim; Jer-Yuan Hsu; M Mitchell Smith; C David Allis
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-26       Impact factor: 11.205

5.  A dual role of linker histone H1.4 Lys 34 acetylation in transcriptional activation.

Authors:  Kinga Kamieniarz; Annalisa Izzo; Miroslav Dundr; Philipp Tropberger; Luka Ozretic; Jutta Kirfel; Elisabeth Scheer; Philippe Tropel; Jacek R Wisniewski; Laszlo Tora; Stephane Viville; Reinhard Buettner; Robert Schneider
Journal:  Genes Dev       Date:  2012-03-30       Impact factor: 11.361

6.  Site-specific incorporation of ε-N-crotonyllysine into histones.

Authors:  Chan Hyuk Kim; Mingchao Kang; Hak Joong Kim; Abhishek Chatterjee; Peter G Schultz
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Review 7.  Chemical and biochemical approaches in the study of histone methylation and demethylation.

Authors:  Keqin Kathy Li; Cheng Luo; Dongxia Wang; Hualiang Jiang; Y George Zheng
Journal:  Med Res Rev       Date:  2012-07       Impact factor: 12.944

8.  Charge state of the globular histone core controls stability of the nucleosome.

Authors:  Andrew T Fenley; David A Adams; Alexey V Onufriev
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

9.  Activator-dependent p300 acetylation of chromatin in vitro: enhancement of transcription by disruption of repressive nucleosome-nucleosome interactions.

Authors:  Heather J Szerlong; Jessica E Prenni; Jennifer K Nyborg; Jeffrey C Hansen
Journal:  J Biol Chem       Date:  2010-08-18       Impact factor: 5.157

10.  A Designed Enzyme Promotes Selective Post-translational Acylation.

Authors:  Pallavi M Gosavi; Megha Jayachandran; Joel J L Rempillo; Oleksii Zozulia; Olga V Makhlynets; Ivan V Korendovych
Journal:  Chembiochem       Date:  2018-06-21       Impact factor: 3.164

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