Literature DB >> 23270812

Chromatin organization and transcriptional regulation.

Michael R Hübner1, Mélanie A Eckersley-Maslin, David L Spector.   

Abstract

Cell type specific transcriptional regulation must be adhered to in order to maintain cell identity throughout the lifetime of an organism, yet it must be flexible enough to allow for responses to endogenous and exogenous stimuli. This regulation is mediated not only by molecular factors (e.g. cell type specific transcription factors, histone and DNA modifications), but also on the level of chromatin and genome organization. In this review we focus on recent findings that have contributed to our understanding of higher order chromatin structure and genome organization within the nucleus. We highlight new findings on the dynamic positioning of genes relative to each other, as well as to their chromosome territory and the nuclear lamina, and how the position of genes correlates with their transcriptional activity.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 23270812      PMCID: PMC3612554          DOI: 10.1016/j.gde.2012.11.006

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  62 in total

Review 1.  A decade of 3C technologies: insights into nuclear organization.

Authors:  Elzo de Wit; Wouter de Laat
Journal:  Genes Dev       Date:  2012-01-01       Impact factor: 11.361

2.  DNA damage defines sites of recurrent chromosomal translocations in B lymphocytes.

Authors:  Ofir Hakim; Wolfgang Resch; Arito Yamane; Isaac Klein; Kyong-Rim Kieffer-Kwon; Mila Jankovic; Thiago Oliveira; Anne Bothmer; Ty C Voss; Camilo Ansarah-Sobrinho; Ewy Mathe; Genqing Liang; Jesse Cobell; Hirotaka Nakahashi; Davide F Robbiani; Andre Nussenzweig; Gordon L Hager; Michel C Nussenzweig; Rafael Casellas
Journal:  Nature       Date:  2012-02-07       Impact factor: 49.962

3.  Chromatin higher-order structure studied by neutron scattering and scanning transmission electron microscopy.

Authors:  S E Gerchman; V Ramakrishnan
Journal:  Proc Natl Acad Sci U S A       Date:  1987-11       Impact factor: 11.205

4.  Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30-nm chromatin structure.

Authors:  Yoshinori Nishino; Mikhail Eltsov; Yasumasa Joti; Kazuki Ito; Hideaki Takata; Yukio Takahashi; Saera Hihara; Achilleas S Frangakis; Naoko Imamoto; Tetsuya Ishikawa; Kazuhiro Maeshima
Journal:  EMBO J       Date:  2012-02-17       Impact factor: 11.598

5.  Structure of the 300A chromatin filament: X-ray diffraction from oriented samples.

Authors:  J Widom; A Klug
Journal:  Cell       Date:  1985-11       Impact factor: 41.582

6.  Genome architectures revealed by tethered chromosome conformation capture and population-based modeling.

Authors:  Reza Kalhor; Harianto Tjong; Nimanthi Jayathilaka; Frank Alber; Lin Chen
Journal:  Nat Biotechnol       Date:  2011-12-25       Impact factor: 54.908

7.  Spatial organization of the mouse genome and its role in recurrent chromosomal translocations.

Authors:  Yu Zhang; Rachel Patton McCord; Yu-Jui Ho; Bryan R Lajoie; Dominic G Hildebrand; Aline C Simon; Michael S Becker; Frederick W Alt; Job Dekker
Journal:  Cell       Date:  2012-02-16       Impact factor: 41.582

8.  Chromatin fibers observed in situ in frozen hydrated sections. Native fiber diameter is not correlated with nucleosome repeat length.

Authors:  C L Woodcock
Journal:  J Cell Biol       Date:  1994-04       Impact factor: 10.539

9.  Visualization of G1 chromosomes: a folded, twisted, supercoiled chromonema model of interphase chromatid structure.

Authors:  A S Belmont; K Bruce
Journal:  J Cell Biol       Date:  1994-10       Impact factor: 10.539

10.  Gene recruitment of the activated INO1 locus to the nuclear membrane.

Authors:  Jason H Brickner; Peter Walter
Journal:  PLoS Biol       Date:  2004-09-28       Impact factor: 8.029

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  68 in total

1.  Evolutionary Conservation and Diversification of Puf RNA Binding Proteins and Their mRNA Targets.

Authors:  Gregory J Hogan; Patrick O Brown; Daniel Herschlag
Journal:  PLoS Biol       Date:  2015-11-20       Impact factor: 8.029

Review 2.  Random monoallelic expression of autosomal genes: stochastic transcription and allele-level regulation.

Authors:  Björn Reinius; Rickard Sandberg
Journal:  Nat Rev Genet       Date:  2015-10-07       Impact factor: 53.242

3.  CASFISH: CRISPR/Cas9-mediated in situ labeling of genomic loci in fixed cells.

Authors:  Wulan Deng; Xinghua Shi; Robert Tjian; Timothée Lionnet; Robert H Singer
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-31       Impact factor: 11.205

4.  p63 and Brg1 control developmentally regulated higher-order chromatin remodelling at the epidermal differentiation complex locus in epidermal progenitor cells.

Authors:  Andrei N Mardaryev; Michal R Gdula; Joanne L Yarker; Vladimir U Emelianov; Vladimir N Emelianov; Krzysztof Poterlowicz; Andrey A Sharov; Tatyana Y Sharova; Julie A Scarpa; Boris Joffe; Irina Solovei; Pierre Chambon; Vladimir A Botchkarev; Michael Y Fessing
Journal:  Development       Date:  2014-01       Impact factor: 6.868

Review 5.  Role of chromatin in water stress responses in plants.

Authors:  Soon-Ki Han; Doris Wagner
Journal:  J Exp Bot       Date:  2013-12-03       Impact factor: 6.992

6.  A method for simultaneously delineating multiple targets in 3D-FISH using limited channels, lasers, and fluorochromes.

Authors:  F Y Zhao; X Yang; D Y Chen; W Y Ma; J G Zheng; X M Zhang
Journal:  Eur Biophys J       Date:  2013-12-04       Impact factor: 1.733

Review 7.  Epigenetic control in skin development, homeostasis and injury repair.

Authors:  Sangjo Kang; Gopal Chovatiya; Tudorita Tumbar
Journal:  Exp Dermatol       Date:  2019-02-12       Impact factor: 3.960

Review 8.  Chromosome positioning and male infertility: it comes with the territory.

Authors:  Zaida Sarrate; Mireia Solé; Francesca Vidal; Ester Anton; Joan Blanco
Journal:  J Assist Reprod Genet       Date:  2018-09-18       Impact factor: 3.412

Review 9.  Manipulating nuclear architecture.

Authors:  Wulan Deng; Gerd A Blobel
Journal:  Curr Opin Genet Dev       Date:  2013-12-12       Impact factor: 5.578

10.  Genetic and epigenetic mechanisms underlying vernalization.

Authors:  Dong-Hwan Kim; Sibum Sung
Journal:  Arabidopsis Book       Date:  2014-02-12
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