Literature DB >> 22412529

3,3'-Dibenzoyl-1,1'-dibenzyl-1,1'-(ethane-1,2-di-yl)-dithio-urea.

Andrzej Okuniewski1, Jaroslaw Chojnacki, Barbara Becker.   

Abstract

In the title compound, C(32)H(30)N(4)O(2)S(2), the carbonyl and thio-carbonyl groups are found in a rare synclinal conformation, with an S-CC-O pseudo-torsion angle of 62.6 (2)°. The mol-ecule has C(i) = S(2) point-group symmetry with a crystallographic center of inversion located in the middle of the ethyl-ene bridge. One of the symmetry-independent phenyl rings is disordered over two orientations, with a site-occupation ratio of 70:30. The distances between the centroids of the nearest phenyl rings are equal to one of the lattice constants [a = 4.7767 (2) Å], so stacking inter-actions are extremely weak. Mol-ecules are joined by bifurcated hydrogen bonds (N-H⋯O and N-H⋯S), forming a ladder-like arrangement along [100]. van der Waals forces combine these ladders into a three-dimensional structure. The dependency between the S⋯O distance and the improper S=CC=O torsion angle based on 739 structures containing the CC(=O)NC(=S)N moiety is discussed.

Entities:  

Year:  2012        PMID: 22412529      PMCID: PMC3295418          DOI: 10.1107/S1600536812002954

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structures of bis­(N-benzoyl­thio­ureas) derived from aliphatic diamines, see: Ding et al. (2008 ▶); Dong et al. (2007 ▶); Sow et al. (2009 ▶). For those derived from o-cyclo­hexa­ne­diamine, see: Jumal et al. (2011 ▶). For those derived from aromatic diamines, see: Cao et al. (2007 ▶); Li et al. (2009 ▶); Thiam et al. (2008 ▶); Woei Hung & Kassim (2010 ▶); Yamin & Osman (2011 ▶). For other acyl derivaties obtained from o- and p-phenyl­enediamine (also solvates), see: Dong, Yan et al. (2008 ▶); Dong, Yang et al. (2008 ▶); Du & Du (2008 ▶); Du et al. (2008 ▶). For 1-benzoyl-3-phenyl­urea, see: Okuniewski et al. (2010 ▶). For the synthetic procedure, see: Douglass & Dains (1934 ▶). For a review on N-aroyl­thio­ureas, see: Aly et al. (2007 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C32H30N4O2S2 M = 566.72 Monoclinic, a = 4.7767 (2) Å b = 25.1653 (16) Å c = 11.9998 (8) Å β = 91.585 (5)° V = 1441.91 (15) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 298 K 0.61 × 0.18 × 0.08 mm

Data collection

Oxford Diffraction Xcalibur diffractometer with a Sapphire2 (large Be window) detector Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.780, T max = 1 7277 measured reflections 2685 independent reflections 2021 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.05 wR(F 2) = 0.123 S = 1.04 2685 reflections 231 parameters 163 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812002954/im2351sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812002954/im2351Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812002954/im2351Isup3.smi Supplementary material file. DOI: 10.1107/S1600536812002954/im2351Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C32H30N4O2S2F(000) = 596
Mr = 566.72Dx = 1.305 Mg m3
Monoclinic, P21/cMelting point: 438(1) K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 4.7767 (2) ÅCell parameters from 2955 reflections
b = 25.1653 (16) Åθ = 2.3–28.7°
c = 11.9998 (8) ŵ = 0.22 mm1
β = 91.585 (5)°T = 298 K
V = 1441.91 (15) Å3Needle, colourless
Z = 20.61 × 0.18 × 0.08 mm
Oxford Diffraction Xcalibur Sapphire2 (large Be window) diffractometer2685 independent reflections
Graphite monochromator2021 reflections with I > 2σ(I)
Detector resolution: 8.1883 pixels mm-1Rint = 0.031
ω scansθmax = 25.5°, θmin = 2.4°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)h = −5→5
Tmin = 0.780, Tmax = 1k = −26→30
7277 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.05Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0551P)2 + 0.2801P] where P = (Fo2 + 2Fc2)/3
2685 reflections(Δ/σ)max = 0.016
231 parametersΔρmax = 0.30 e Å3
163 restraintsΔρmin = −0.15 e Å3
Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.33.66 (Oxford Diffraction, 2010) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C11.1371 (4)0.58001 (8)0.64272 (17)0.0356 (5)
C31.0855 (4)0.49446 (8)0.55324 (16)0.0377 (5)
H3A1.04680.45870.57880.045*
H3B1.28350.49670.53790.045*
C101.2067 (5)0.64605 (9)0.7895 (2)0.0458 (5)
C111.0914 (5)0.69614 (9)0.8323 (2)0.0528 (6)
C12A0.882 (3)0.7252 (6)0.7782 (14)0.065 (3)0.71 (3)
H12A0.79810.7130.71210.078*0.71 (3)
C13A0.800 (2)0.7731 (4)0.8256 (11)0.077 (3)0.71 (3)
H13A0.65660.79270.79110.092*0.71 (3)
C14A0.924 (2)0.7922 (3)0.9218 (13)0.078 (3)0.71 (3)
H14A0.86640.82440.95130.093*0.71 (3)
C15A1.138 (3)0.7634 (4)0.9756 (10)0.078 (3)0.71 (3)
H15A1.22140.77621.04130.093*0.71 (3)
C16A1.225 (3)0.7153 (5)0.9299 (9)0.065 (2)0.71 (3)
H16A1.37020.69610.96380.077*0.71 (3)
C12B0.873 (7)0.7181 (15)0.769 (3)0.075 (7)0.29 (3)
H12B0.80080.69680.71180.091*0.29 (3)
C13B0.747 (7)0.7674 (12)0.780 (3)0.097 (6)0.29 (3)
H13B0.61920.78140.72810.116*0.29 (3)
C14B0.831 (7)0.7934 (10)0.875 (2)0.083 (6)0.29 (3)
H14B0.73740.82430.89410.099*0.29 (3)
C15B1.048 (7)0.7760 (10)0.943 (3)0.080 (7)0.29 (3)
H15B1.11110.79641.00350.095*0.29 (3)
C16B1.168 (7)0.7275 (11)0.920 (2)0.075 (7)0.29 (3)
H16B1.31070.71550.96830.09*0.29 (3)
C200.8164 (4)0.51283 (9)0.72178 (18)0.0410 (5)
H20A0.65110.49950.68220.049*
H20B0.75920.54210.76870.049*
C210.9395 (4)0.46935 (9)0.79385 (17)0.0423 (5)
C221.1471 (6)0.48056 (12)0.8727 (2)0.0678 (8)
H221.21590.5150.87980.081*
C231.2529 (6)0.44077 (16)0.9412 (3)0.0881 (10)
H231.3950.44870.99310.106*
C241.1543 (7)0.39089 (16)0.9341 (3)0.0861 (11)
H241.22250.36480.98260.103*
C250.9545 (8)0.37876 (13)0.8557 (3)0.0920 (11)
H250.89060.3440.84870.11*
C260.8446 (6)0.41794 (11)0.7858 (2)0.0704 (8)
H260.70560.40930.7330.085*
N11.0341 (4)0.61630 (7)0.72100 (16)0.0442 (5)
N21.0180 (3)0.53247 (7)0.64038 (13)0.0345 (4)
O11.4457 (3)0.63131 (7)0.81329 (15)0.0619 (5)
S11.38677 (11)0.59942 (2)0.55656 (5)0.0483 (2)
H1N0.855 (2)0.6203 (9)0.7200 (19)0.053 (7)*
U11U22U33U12U13U23
C10.0269 (10)0.0383 (12)0.0413 (12)0.0072 (9)−0.0054 (8)−0.0019 (9)
C30.0358 (11)0.0373 (12)0.0398 (12)0.0061 (9)−0.0028 (9)−0.0038 (9)
C100.0430 (13)0.0431 (13)0.0515 (14)−0.0053 (10)0.0050 (10)−0.0062 (11)
C110.0496 (14)0.0408 (14)0.0692 (17)−0.0103 (12)0.0197 (12)−0.0113 (12)
C12A0.068 (5)0.037 (6)0.092 (5)0.006 (4)0.017 (4)−0.010 (4)
C13A0.081 (5)0.040 (4)0.109 (9)0.008 (4)0.015 (5)−0.023 (4)
C14A0.074 (7)0.047 (4)0.114 (9)−0.003 (4)0.021 (6)−0.036 (5)
C15A0.088 (5)0.063 (5)0.083 (5)−0.008 (4)0.018 (4)−0.040 (4)
C16A0.068 (4)0.055 (5)0.071 (4)−0.005 (3)0.010 (3)−0.029 (3)
C12B0.086 (12)0.035 (9)0.108 (14)−0.010 (8)0.051 (11)−0.003 (9)
C13B0.113 (13)0.068 (9)0.112 (15)−0.028 (9)0.029 (11)−0.039 (11)
C14B0.094 (13)0.060 (10)0.095 (15)−0.015 (10)0.016 (11)−0.033 (10)
C15B0.089 (18)0.060 (13)0.090 (12)−0.012 (11)0.015 (12)−0.014 (11)
C16B0.071 (12)0.053 (11)0.103 (11)−0.020 (9)0.024 (8)−0.012 (9)
C200.0320 (10)0.0471 (13)0.0437 (12)−0.0021 (10)0.0012 (9)−0.0005 (10)
C210.0395 (11)0.0475 (13)0.0403 (12)0.0028 (10)0.0078 (9)0.0014 (10)
C220.0624 (16)0.0777 (19)0.0625 (17)−0.0047 (14)−0.0143 (13)0.0092 (15)
C230.070 (2)0.123 (3)0.071 (2)0.007 (2)−0.0164 (15)0.031 (2)
C240.082 (2)0.102 (3)0.076 (2)0.029 (2)0.0143 (18)0.040 (2)
C250.122 (3)0.0551 (19)0.099 (3)0.005 (2)0.015 (2)0.0219 (18)
C260.083 (2)0.0545 (17)0.073 (2)−0.0065 (15)−0.0062 (16)0.0080 (14)
N10.0290 (9)0.0431 (11)0.0605 (12)0.0037 (8)0.0001 (8)−0.0168 (9)
N20.0309 (8)0.0370 (10)0.0355 (9)0.0025 (7)0.0006 (7)−0.0037 (7)
O10.0418 (9)0.0742 (12)0.0691 (12)0.0019 (9)−0.0104 (8)−0.0170 (9)
S10.0406 (3)0.0480 (4)0.0568 (4)0.0003 (3)0.0084 (3)0.0033 (3)
C1—N21.325 (3)C12B—H12B0.93
C1—N11.408 (3)C13B—C14B1.361 (15)
C1—S11.673 (2)C13B—H13B0.93
C3—N21.460 (2)C14B—C15B1.374 (17)
C3—C3i1.523 (4)C14B—H14B0.93
C3—H3A0.97C15B—C16B1.379 (16)
C3—H3B0.97C15B—H15B0.93
C10—O11.227 (3)C16B—H16B0.93
C10—N11.370 (3)C20—N21.476 (3)
C10—C111.474 (3)C20—C211.504 (3)
C11—C16B1.362 (16)C20—H20A0.97
C11—C12A1.386 (7)C20—H20B0.97
C11—C12B1.387 (18)C21—C261.373 (3)
C11—C16A1.403 (8)C21—C221.381 (3)
C12A—C13A1.395 (10)C22—C231.382 (4)
C12A—H12A0.93C22—H220.93
C13A—C14A1.371 (9)C23—C241.343 (5)
C13A—H13A0.93C23—H230.93
C14A—C15A1.394 (9)C24—C251.356 (4)
C14A—H14A0.93C24—H240.93
C15A—C16A1.399 (9)C25—C261.388 (4)
C15A—H15A0.93C25—H250.93
C16A—H16A0.93C26—H260.93
C12B—C13B1.388 (17)N1—H1N0.861 (10)
N2—C1—N1116.24 (18)C13B—C14B—C15B123 (2)
N2—C1—S1124.30 (16)C13B—C14B—H14B118.5
N1—C1—S1119.40 (16)C15B—C14B—H14B118.5
N2—C3—C3i110.9 (2)C14B—C15B—C16B118 (2)
N2—C3—H3A109.5C14B—C15B—H15B120.9
C3i—C3—H3A109.5C16B—C15B—H15B120.9
N2—C3—H3B109.5C11—C16B—C15B124 (2)
C3i—C3—H3B109.5C11—C16B—H16B117.9
H3A—C3—H3B108C15B—C16B—H16B117.9
O1—C10—N1121.0 (2)N2—C20—C21111.86 (16)
O1—C10—C11122.1 (2)N2—C20—H20A109.2
N1—C10—C11116.9 (2)C21—C20—H20A109.2
C16B—C11—C12B112 (2)N2—C20—H20B109.2
C12A—C11—C16A121.1 (8)C21—C20—H20B109.2
C16B—C11—C10132.2 (14)H20A—C20—H20B107.9
C12A—C11—C10124.0 (7)C26—C21—C22118.0 (2)
C12B—C11—C10115.6 (18)C26—C21—C20121.4 (2)
C16A—C11—C10114.7 (6)C22—C21—C20120.5 (2)
C11—C12A—C13A118.2 (10)C21—C22—C23120.2 (3)
C11—C12A—H12A120.9C21—C22—H22119.9
C13A—C12A—H12A120.9C23—C22—H22119.9
C14A—C13A—C12A121.7 (8)C24—C23—C22121.2 (3)
C14A—C13A—H13A119.1C24—C23—H23119.4
C12A—C13A—H13A119.1C22—C23—H23119.4
C13A—C14A—C15A120.3 (7)C23—C24—C25119.5 (3)
C13A—C14A—H14A119.9C23—C24—H24120.2
C15A—C14A—H14A119.9C25—C24—H24120.2
C14A—C15A—C16A119.3 (8)C24—C25—C26120.4 (3)
C14A—C15A—H15A120.3C24—C25—H25119.8
C16A—C15A—H15A120.3C26—C25—H25119.8
C15A—C16A—C11119.4 (8)C21—C26—C25120.5 (3)
C15A—C16A—H16A120.3C21—C26—H26119.7
C11—C16A—H16A120.3C25—C26—H26119.7
C11—C12B—C13B129 (4)C10—N1—C1122.61 (17)
C11—C12B—H12B115.6C10—N1—H1N121.7 (16)
C13B—C12B—H12B115.6C1—N1—H1N115.6 (16)
C14B—C13B—C12B113 (3)C1—N2—C3120.25 (17)
C14B—C13B—H13B123.5C1—N2—C20125.18 (17)
C12B—C13B—H13B123.5C3—N2—C20114.56 (16)
O1—C10—C1—S1−62.55 (17)S1—C1—N1—C10−49.1 (3)
O1—C10—N1—C1−24.3 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1ii0.86 (1)2.30 (1)3.073 (2)150 (2)
N1—H1N···S1ii0.86 (1)2.98 (2)3.647 (2)136 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O1i0.86 (1)2.30 (1)3.073 (2)150 (2)
N1—H1N⋯S1i0.86 (1)2.98 (2)3.647 (2)136 (2)

Symmetry code: (i) .

  13 in total

1.  3,3'-Dibenzoyl-1,1'-(3,6-dioxaoctane-1,8-di-yl)dithio-urea.

Authors:  Mouhamadou Moustapha Sow; Ousmane Diouf; Aliou Hamady Barry; Mohamed Gaye; Abdou Salam Sall
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-21

2.  3,3'-Bis(3,4,5-trimethoxy-benzo-yl)-1,1'-(o-phenyl-ene)dithio-urea ethanol solvate.

Authors:  Hai-Tang Du; Hai-Jun Du
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-31

3.  3,3'-Di-2-naphthoyl-1,1'-(o-phenyl-ene)dithio-urea.

Authors:  Hai-Tang Du; Hai-Jun Du; Weiyi Zhou
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-20

4.  3,3'-Bis(4-nitro-phen-yl)-1,1'-(p-phenyl-ene)dithio-urea dimethyl sulfoxide disolvate.

Authors:  Wen-Kui Dong; Hai-Bo Yan; Lan-Qin Chai; Zhong-Wu Lv; Chun-Yu Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-17

5.  3,3'-Dibenzoyl-1,1'-(butane-1,4-diyl)-dithio-urea.

Authors:  Yu-Jie Ding; Xi-Bin Chang; Xiao-Qing Yang; Wen-Kui Dong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-05

6.  1,2-Bis(N'-benzoyl-thio-ureido)benzene.

Authors:  Elhadj Ibrahima Thiam; Mayoro Diop; Mohamed Gaye; Abdou Salam Sall; Aliou Hamady Barry
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-02

7.  1-Benzoyl-3-[4-(3-benzoyl-thio-ureido)phen-yl]thio-urea.

Authors:  Wong Woei Hung; Mohammad B Kassim
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-13

8.  (±)-1,2-Bis(N'-benzoyl-thio-ureido)cyclo-hexa-ne.

Authors:  Juliana Jumal; Abdul Razak Ibrahim; Bohari M Yamin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-29

9.  N-Benzoyl-N'-phenyl-urea.

Authors:  Andrzej Okuniewski; Jaroslaw Chojnacki; Barbara Becker
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-20

10.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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