| Literature DB >> 22412529 |
Andrzej Okuniewski1, Jaroslaw Chojnacki, Barbara Becker.
Abstract
In the title compound, C(32)H(30)N(4)O(2)S(2), the carbonyl and thio-carbonyl groups are found in a rare synclinal conformation, with an S-C⋯C-O pseudo-torsion angle of 62.6 (2)°. The mol-ecule has C(i) = S(2) point-group symmetry with a crystallographic center of inversion located in the middle of the ethyl-ene bridge. One of the symmetry-independent phenyl rings is disordered over two orientations, with a site-occupation ratio of 70:30. The distances between the centroids of the nearest phenyl rings are equal to one of the lattice constants [a = 4.7767 (2) Å], so stacking inter-actions are extremely weak. Mol-ecules are joined by bifurcated hydrogen bonds (N-H⋯O and N-H⋯S), forming a ladder-like arrangement along [100]. van der Waals forces combine these ladders into a three-dimensional structure. The dependency between the S⋯O distance and the improper S=C⋯C=O torsion angle based on 739 structures containing the CC(=O)NC(=S)N moiety is discussed.Entities:
Year: 2012 PMID: 22412529 PMCID: PMC3295418 DOI: 10.1107/S1600536812002954
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C32H30N4O2S2 | |
| Monoclinic, | Melting point: 438(1) K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 2955 reflections | |
| θ = 2.3–28.7° | |
| µ = 0.22 mm−1 | |
| β = 91.585 (5)° | |
| Needle, colourless | |
| 0.61 × 0.18 × 0.08 mm |
| Oxford Diffraction Xcalibur Sapphire2 (large Be window) diffractometer | 2685 independent reflections |
| Graphite monochromator | 2021 reflections with |
| Detector resolution: 8.1883 pixels mm-1 | |
| ω scans | θmax = 25.5°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 7277 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2685 reflections | (Δ/σ)max = 0.016 |
| 231 parameters | Δρmax = 0.30 e Å−3 |
| 163 restraints | Δρmin = −0.15 e Å−3 |
| Experimental. CrysAlisPro, Oxford Diffraction Ltd., Version 1.171.33.66 (Oxford Diffraction, 2010) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| C1 | 1.1371 (4) | 0.58001 (8) | 0.64272 (17) | 0.0356 (5) | |
| C3 | 1.0855 (4) | 0.49446 (8) | 0.55324 (16) | 0.0377 (5) | |
| H3A | 1.0468 | 0.4587 | 0.5788 | 0.045* | |
| H3B | 1.2835 | 0.4967 | 0.5379 | 0.045* | |
| C10 | 1.2067 (5) | 0.64605 (9) | 0.7895 (2) | 0.0458 (5) | |
| C11 | 1.0914 (5) | 0.69614 (9) | 0.8323 (2) | 0.0528 (6) | |
| C12A | 0.882 (3) | 0.7252 (6) | 0.7782 (14) | 0.065 (3) | 0.71 (3) |
| H12A | 0.7981 | 0.713 | 0.7121 | 0.078* | 0.71 (3) |
| C13A | 0.800 (2) | 0.7731 (4) | 0.8256 (11) | 0.077 (3) | 0.71 (3) |
| H13A | 0.6566 | 0.7927 | 0.7911 | 0.092* | 0.71 (3) |
| C14A | 0.924 (2) | 0.7922 (3) | 0.9218 (13) | 0.078 (3) | 0.71 (3) |
| H14A | 0.8664 | 0.8244 | 0.9513 | 0.093* | 0.71 (3) |
| C15A | 1.138 (3) | 0.7634 (4) | 0.9756 (10) | 0.078 (3) | 0.71 (3) |
| H15A | 1.2214 | 0.7762 | 1.0413 | 0.093* | 0.71 (3) |
| C16A | 1.225 (3) | 0.7153 (5) | 0.9299 (9) | 0.065 (2) | 0.71 (3) |
| H16A | 1.3702 | 0.6961 | 0.9638 | 0.077* | 0.71 (3) |
| C12B | 0.873 (7) | 0.7181 (15) | 0.769 (3) | 0.075 (7) | 0.29 (3) |
| H12B | 0.8008 | 0.6968 | 0.7118 | 0.091* | 0.29 (3) |
| C13B | 0.747 (7) | 0.7674 (12) | 0.780 (3) | 0.097 (6) | 0.29 (3) |
| H13B | 0.6192 | 0.7814 | 0.7281 | 0.116* | 0.29 (3) |
| C14B | 0.831 (7) | 0.7934 (10) | 0.875 (2) | 0.083 (6) | 0.29 (3) |
| H14B | 0.7374 | 0.8243 | 0.8941 | 0.099* | 0.29 (3) |
| C15B | 1.048 (7) | 0.7760 (10) | 0.943 (3) | 0.080 (7) | 0.29 (3) |
| H15B | 1.1111 | 0.7964 | 1.0035 | 0.095* | 0.29 (3) |
| C16B | 1.168 (7) | 0.7275 (11) | 0.920 (2) | 0.075 (7) | 0.29 (3) |
| H16B | 1.3107 | 0.7155 | 0.9683 | 0.09* | 0.29 (3) |
| C20 | 0.8164 (4) | 0.51283 (9) | 0.72178 (18) | 0.0410 (5) | |
| H20A | 0.6511 | 0.4995 | 0.6822 | 0.049* | |
| H20B | 0.7592 | 0.5421 | 0.7687 | 0.049* | |
| C21 | 0.9395 (4) | 0.46935 (9) | 0.79385 (17) | 0.0423 (5) | |
| C22 | 1.1471 (6) | 0.48056 (12) | 0.8727 (2) | 0.0678 (8) | |
| H22 | 1.2159 | 0.515 | 0.8798 | 0.081* | |
| C23 | 1.2529 (6) | 0.44077 (16) | 0.9412 (3) | 0.0881 (10) | |
| H23 | 1.395 | 0.4487 | 0.9931 | 0.106* | |
| C24 | 1.1543 (7) | 0.39089 (16) | 0.9341 (3) | 0.0861 (11) | |
| H24 | 1.2225 | 0.3648 | 0.9826 | 0.103* | |
| C25 | 0.9545 (8) | 0.37876 (13) | 0.8557 (3) | 0.0920 (11) | |
| H25 | 0.8906 | 0.344 | 0.8487 | 0.11* | |
| C26 | 0.8446 (6) | 0.41794 (11) | 0.7858 (2) | 0.0704 (8) | |
| H26 | 0.7056 | 0.4093 | 0.733 | 0.085* | |
| N1 | 1.0341 (4) | 0.61630 (7) | 0.72100 (16) | 0.0442 (5) | |
| N2 | 1.0180 (3) | 0.53247 (7) | 0.64038 (13) | 0.0345 (4) | |
| O1 | 1.4457 (3) | 0.63131 (7) | 0.81329 (15) | 0.0619 (5) | |
| S1 | 1.38677 (11) | 0.59942 (2) | 0.55656 (5) | 0.0483 (2) | |
| H1N | 0.855 (2) | 0.6203 (9) | 0.7200 (19) | 0.053 (7)* |
| C1 | 0.0269 (10) | 0.0383 (12) | 0.0413 (12) | 0.0072 (9) | −0.0054 (8) | −0.0019 (9) |
| C3 | 0.0358 (11) | 0.0373 (12) | 0.0398 (12) | 0.0061 (9) | −0.0028 (9) | −0.0038 (9) |
| C10 | 0.0430 (13) | 0.0431 (13) | 0.0515 (14) | −0.0053 (10) | 0.0050 (10) | −0.0062 (11) |
| C11 | 0.0496 (14) | 0.0408 (14) | 0.0692 (17) | −0.0103 (12) | 0.0197 (12) | −0.0113 (12) |
| C12A | 0.068 (5) | 0.037 (6) | 0.092 (5) | 0.006 (4) | 0.017 (4) | −0.010 (4) |
| C13A | 0.081 (5) | 0.040 (4) | 0.109 (9) | 0.008 (4) | 0.015 (5) | −0.023 (4) |
| C14A | 0.074 (7) | 0.047 (4) | 0.114 (9) | −0.003 (4) | 0.021 (6) | −0.036 (5) |
| C15A | 0.088 (5) | 0.063 (5) | 0.083 (5) | −0.008 (4) | 0.018 (4) | −0.040 (4) |
| C16A | 0.068 (4) | 0.055 (5) | 0.071 (4) | −0.005 (3) | 0.010 (3) | −0.029 (3) |
| C12B | 0.086 (12) | 0.035 (9) | 0.108 (14) | −0.010 (8) | 0.051 (11) | −0.003 (9) |
| C13B | 0.113 (13) | 0.068 (9) | 0.112 (15) | −0.028 (9) | 0.029 (11) | −0.039 (11) |
| C14B | 0.094 (13) | 0.060 (10) | 0.095 (15) | −0.015 (10) | 0.016 (11) | −0.033 (10) |
| C15B | 0.089 (18) | 0.060 (13) | 0.090 (12) | −0.012 (11) | 0.015 (12) | −0.014 (11) |
| C16B | 0.071 (12) | 0.053 (11) | 0.103 (11) | −0.020 (9) | 0.024 (8) | −0.012 (9) |
| C20 | 0.0320 (10) | 0.0471 (13) | 0.0437 (12) | −0.0021 (10) | 0.0012 (9) | −0.0005 (10) |
| C21 | 0.0395 (11) | 0.0475 (13) | 0.0403 (12) | 0.0028 (10) | 0.0078 (9) | 0.0014 (10) |
| C22 | 0.0624 (16) | 0.0777 (19) | 0.0625 (17) | −0.0047 (14) | −0.0143 (13) | 0.0092 (15) |
| C23 | 0.070 (2) | 0.123 (3) | 0.071 (2) | 0.007 (2) | −0.0164 (15) | 0.031 (2) |
| C24 | 0.082 (2) | 0.102 (3) | 0.076 (2) | 0.029 (2) | 0.0143 (18) | 0.040 (2) |
| C25 | 0.122 (3) | 0.0551 (19) | 0.099 (3) | 0.005 (2) | 0.015 (2) | 0.0219 (18) |
| C26 | 0.083 (2) | 0.0545 (17) | 0.073 (2) | −0.0065 (15) | −0.0062 (16) | 0.0080 (14) |
| N1 | 0.0290 (9) | 0.0431 (11) | 0.0605 (12) | 0.0037 (8) | 0.0001 (8) | −0.0168 (9) |
| N2 | 0.0309 (8) | 0.0370 (10) | 0.0355 (9) | 0.0025 (7) | 0.0006 (7) | −0.0037 (7) |
| O1 | 0.0418 (9) | 0.0742 (12) | 0.0691 (12) | 0.0019 (9) | −0.0104 (8) | −0.0170 (9) |
| S1 | 0.0406 (3) | 0.0480 (4) | 0.0568 (4) | 0.0003 (3) | 0.0084 (3) | 0.0033 (3) |
| C1—N2 | 1.325 (3) | C12B—H12B | 0.93 |
| C1—N1 | 1.408 (3) | C13B—C14B | 1.361 (15) |
| C1—S1 | 1.673 (2) | C13B—H13B | 0.93 |
| C3—N2 | 1.460 (2) | C14B—C15B | 1.374 (17) |
| C3—C3i | 1.523 (4) | C14B—H14B | 0.93 |
| C3—H3A | 0.97 | C15B—C16B | 1.379 (16) |
| C3—H3B | 0.97 | C15B—H15B | 0.93 |
| C10—O1 | 1.227 (3) | C16B—H16B | 0.93 |
| C10—N1 | 1.370 (3) | C20—N2 | 1.476 (3) |
| C10—C11 | 1.474 (3) | C20—C21 | 1.504 (3) |
| C11—C16B | 1.362 (16) | C20—H20A | 0.97 |
| C11—C12A | 1.386 (7) | C20—H20B | 0.97 |
| C11—C12B | 1.387 (18) | C21—C26 | 1.373 (3) |
| C11—C16A | 1.403 (8) | C21—C22 | 1.381 (3) |
| C12A—C13A | 1.395 (10) | C22—C23 | 1.382 (4) |
| C12A—H12A | 0.93 | C22—H22 | 0.93 |
| C13A—C14A | 1.371 (9) | C23—C24 | 1.343 (5) |
| C13A—H13A | 0.93 | C23—H23 | 0.93 |
| C14A—C15A | 1.394 (9) | C24—C25 | 1.356 (4) |
| C14A—H14A | 0.93 | C24—H24 | 0.93 |
| C15A—C16A | 1.399 (9) | C25—C26 | 1.388 (4) |
| C15A—H15A | 0.93 | C25—H25 | 0.93 |
| C16A—H16A | 0.93 | C26—H26 | 0.93 |
| C12B—C13B | 1.388 (17) | N1—H1N | 0.861 (10) |
| N2—C1—N1 | 116.24 (18) | C13B—C14B—C15B | 123 (2) |
| N2—C1—S1 | 124.30 (16) | C13B—C14B—H14B | 118.5 |
| N1—C1—S1 | 119.40 (16) | C15B—C14B—H14B | 118.5 |
| N2—C3—C3i | 110.9 (2) | C14B—C15B—C16B | 118 (2) |
| N2—C3—H3A | 109.5 | C14B—C15B—H15B | 120.9 |
| C3i—C3—H3A | 109.5 | C16B—C15B—H15B | 120.9 |
| N2—C3—H3B | 109.5 | C11—C16B—C15B | 124 (2) |
| C3i—C3—H3B | 109.5 | C11—C16B—H16B | 117.9 |
| H3A—C3—H3B | 108 | C15B—C16B—H16B | 117.9 |
| O1—C10—N1 | 121.0 (2) | N2—C20—C21 | 111.86 (16) |
| O1—C10—C11 | 122.1 (2) | N2—C20—H20A | 109.2 |
| N1—C10—C11 | 116.9 (2) | C21—C20—H20A | 109.2 |
| C16B—C11—C12B | 112 (2) | N2—C20—H20B | 109.2 |
| C12A—C11—C16A | 121.1 (8) | C21—C20—H20B | 109.2 |
| C16B—C11—C10 | 132.2 (14) | H20A—C20—H20B | 107.9 |
| C12A—C11—C10 | 124.0 (7) | C26—C21—C22 | 118.0 (2) |
| C12B—C11—C10 | 115.6 (18) | C26—C21—C20 | 121.4 (2) |
| C16A—C11—C10 | 114.7 (6) | C22—C21—C20 | 120.5 (2) |
| C11—C12A—C13A | 118.2 (10) | C21—C22—C23 | 120.2 (3) |
| C11—C12A—H12A | 120.9 | C21—C22—H22 | 119.9 |
| C13A—C12A—H12A | 120.9 | C23—C22—H22 | 119.9 |
| C14A—C13A—C12A | 121.7 (8) | C24—C23—C22 | 121.2 (3) |
| C14A—C13A—H13A | 119.1 | C24—C23—H23 | 119.4 |
| C12A—C13A—H13A | 119.1 | C22—C23—H23 | 119.4 |
| C13A—C14A—C15A | 120.3 (7) | C23—C24—C25 | 119.5 (3) |
| C13A—C14A—H14A | 119.9 | C23—C24—H24 | 120.2 |
| C15A—C14A—H14A | 119.9 | C25—C24—H24 | 120.2 |
| C14A—C15A—C16A | 119.3 (8) | C24—C25—C26 | 120.4 (3) |
| C14A—C15A—H15A | 120.3 | C24—C25—H25 | 119.8 |
| C16A—C15A—H15A | 120.3 | C26—C25—H25 | 119.8 |
| C15A—C16A—C11 | 119.4 (8) | C21—C26—C25 | 120.5 (3) |
| C15A—C16A—H16A | 120.3 | C21—C26—H26 | 119.7 |
| C11—C16A—H16A | 120.3 | C25—C26—H26 | 119.7 |
| C11—C12B—C13B | 129 (4) | C10—N1—C1 | 122.61 (17) |
| C11—C12B—H12B | 115.6 | C10—N1—H1N | 121.7 (16) |
| C13B—C12B—H12B | 115.6 | C1—N1—H1N | 115.6 (16) |
| C14B—C13B—C12B | 113 (3) | C1—N2—C3 | 120.25 (17) |
| C14B—C13B—H13B | 123.5 | C1—N2—C20 | 125.18 (17) |
| C12B—C13B—H13B | 123.5 | C3—N2—C20 | 114.56 (16) |
| O1—C10—C1—S1 | −62.55 (17) | S1—C1—N1—C10 | −49.1 (3) |
| O1—C10—N1—C1 | −24.3 (3) |
| H··· | ||||
| N1—H1 | 0.86 (1) | 2.30 (1) | 3.073 (2) | 150 (2) |
| N1—H1 | 0.86 (1) | 2.98 (2) | 3.647 (2) | 136 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1N⋯O1i | 0.86 (1) | 2.30 (1) | 3.073 (2) | 150 (2) |
| N1—H1N⋯S1i | 0.86 (1) | 2.98 (2) | 3.647 (2) | 136 (2) |
Symmetry code: (i) .