Literature DB >> 21202055

3,3'-Dibenzoyl-1,1'-(butane-1,4-diyl)-dithio-urea.

Yu-Jie Ding, Xi-Bin Chang, Xiao-Qing Yang, Wen-Kui Dong.   

Abstract

In the centrosymmetric title compound, C(20)H(22)N(4)O(2)S(2), the carbonyl group forms an intra-molecular hydrogen bond with the NH group attached to the butanediyl linker, resulting in a six-membered ring. There are also inter-molecular C-H⋯S inter-actions in the crystal structure, and π-π inter-actions between phenyl groups [2.425 (3) Å].

Entities:  

Year:  2008        PMID: 21202055      PMCID: PMC2961008          DOI: 10.1107/S1600536808004340

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Breuzard et al. (2000 ▶); Burrows et al. (1997 ▶); Dong et al. (2006 ▶); Foss et al. (2004 ▶); Huang et al., 2006 ▶; Nan et al. (2000 ▶); Teoh et al. (1999 ▶); Valdés-Martínez et al. (2004 ▶); Zhang et al. (2006 ▶).

Experimental

Crystal data

C20H22N4O2S2 M = 414.54 Monoclinic, a = 6.0405 (11) Å b = 23.358 (2) Å c = 7.2877 (13) Å β = 104.018 (2)° V = 997.6 (3) Å3 Z = 2 Mo Kα radiation μ = 0.29 mm−1 T = 298 (2) K 0.22 × 0.16 × 0.07 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.939, T max = 0.980 4845 measured reflections 1735 independent reflections 1044 reflections with I > 2σ(I) R int = 0.058

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.106 S = 1.02 1735 reflections 127 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Version 5.1; Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808004340/hg2377sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808004340/hg2377Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H22N4O2S2F000 = 436
Mr = 414.54Dx = 1.380 Mg m3
Monoclinic, P21/cMelting point = 469–471 K
Hall symbol: -P 2ybcMo Kα radiation λ = 0.71073 Å
a = 6.0405 (11) ÅCell parameters from 1545 reflections
b = 23.358 (2) Åθ = 2.9–27.5º
c = 7.2877 (13) ŵ = 0.29 mm1
β = 104.018 (2)ºT = 298 (2) K
V = 997.6 (3) Å3Block, colourless
Z = 20.22 × 0.16 × 0.07 mm
Bruker SMART CCD area-detector diffractometer1735 independent reflections
Radiation source: fine-focus sealed tube1044 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.058
T = 298(2) Kθmax = 25.0º
φ and ω scansθmin = 1.7º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −7→7
Tmin = 0.939, Tmax = 0.980k = −27→21
4845 measured reflectionsl = −8→7
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.056H-atom parameters constrained
wR(F2) = 0.106  w = 1/[σ2(Fo2) + (0.0375P)2 + 0.093P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
1735 reflectionsΔρmax = 0.23 e Å3
127 parametersΔρmin = −0.21 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.6333 (4)0.33193 (10)0.2464 (3)0.0436 (7)
H10.49960.31740.23420.052*
N20.8393 (4)0.41571 (9)0.2530 (3)0.0378 (6)
H20.95880.39440.27470.045*
O11.0080 (4)0.30751 (8)0.3060 (3)0.0556 (7)
S10.39076 (13)0.42652 (4)0.19513 (14)0.0579 (3)
C10.6387 (5)0.39150 (12)0.2345 (4)0.0367 (7)
C20.8669 (5)0.47772 (12)0.2383 (4)0.0403 (8)
H2A0.73510.49310.14820.048*
H2B1.00040.48530.19020.048*
C30.8930 (4)0.50817 (12)0.4263 (4)0.0415 (8)
H3A0.89460.54910.40510.050*
H3B0.76120.49960.47550.050*
C40.8082 (5)0.29268 (13)0.2746 (4)0.0395 (8)
C50.7380 (5)0.23119 (12)0.2626 (4)0.0383 (8)
C60.5157 (6)0.21226 (13)0.1896 (5)0.0530 (9)
H60.39970.23870.14620.064*
C70.4663 (6)0.15458 (15)0.1811 (5)0.0617 (10)
H70.31710.14250.13160.074*
C80.6341 (6)0.11496 (14)0.2445 (5)0.0557 (10)
H80.59930.07610.23940.067*
C90.8531 (6)0.13299 (14)0.3154 (5)0.0555 (9)
H90.96810.10620.35810.067*
C100.9057 (5)0.19086 (13)0.3241 (4)0.0462 (9)
H101.05580.20260.37200.055*
U11U22U33U12U13U23
N10.0352 (14)0.0346 (15)0.060 (2)−0.0048 (12)0.0101 (13)−0.0022 (13)
N20.0309 (14)0.0340 (14)0.0476 (17)0.0051 (11)0.0077 (12)−0.0024 (12)
O10.0374 (13)0.0408 (13)0.0810 (18)−0.0008 (10)−0.0005 (12)0.0001 (12)
S10.0363 (5)0.0507 (5)0.0883 (8)0.0062 (4)0.0181 (5)0.0070 (5)
C10.0325 (17)0.0413 (18)0.036 (2)0.0030 (14)0.0078 (14)0.0004 (15)
C20.0375 (17)0.0373 (18)0.047 (2)0.0039 (14)0.0125 (15)0.0036 (16)
C30.0386 (17)0.0299 (17)0.055 (2)0.0042 (13)0.0102 (16)0.0017 (16)
C40.043 (2)0.0399 (19)0.033 (2)0.0048 (15)0.0035 (16)−0.0001 (15)
C50.0455 (19)0.0358 (18)0.034 (2)0.0012 (15)0.0108 (16)−0.0009 (15)
C60.047 (2)0.042 (2)0.065 (3)0.0019 (16)0.0047 (18)0.0009 (19)
C70.056 (2)0.049 (2)0.075 (3)−0.0142 (18)0.007 (2)−0.005 (2)
C80.074 (3)0.039 (2)0.057 (3)−0.0035 (19)0.021 (2)0.0001 (18)
C90.071 (3)0.043 (2)0.054 (3)0.0150 (19)0.018 (2)0.0049 (18)
C100.044 (2)0.044 (2)0.048 (2)0.0045 (16)0.0070 (17)−0.0015 (17)
N1—C41.376 (3)C3—H3B0.9700
N1—C11.395 (3)C4—C51.494 (4)
N1—H10.8600C5—C101.376 (4)
N2—C11.314 (3)C5—C61.391 (4)
N2—C21.465 (3)C6—C71.378 (4)
N2—H20.8600C6—H60.9300
O1—C41.223 (3)C7—C81.368 (4)
S1—C11.669 (3)C7—H70.9300
C2—C31.518 (4)C8—C91.365 (4)
C2—H2A0.9700C8—H80.9300
C2—H2B0.9700C9—C101.387 (4)
C3—C3i1.516 (5)C9—H90.9300
C3—H3A0.9700C10—H100.9300
C4—N1—C1130.2 (2)O1—C4—N1121.8 (3)
C4—N1—H1114.9O1—C4—C5122.4 (3)
C1—N1—H1114.9N1—C4—C5115.8 (3)
C1—N2—C2122.4 (2)C10—C5—C6118.2 (3)
C1—N2—H2118.8C10—C5—C4117.6 (3)
C2—N2—H2118.8C6—C5—C4124.2 (3)
N2—C1—N1117.2 (2)C7—C6—C5120.4 (3)
N2—C1—S1125.0 (2)C7—C6—H6119.8
N1—C1—S1117.8 (2)C5—C6—H6119.8
N2—C2—C3112.7 (2)C8—C7—C6120.8 (3)
N2—C2—H2A109.1C8—C7—H7119.6
C3—C2—H2A109.1C6—C7—H7119.6
N2—C2—H2B109.1C9—C8—C7119.3 (3)
C3—C2—H2B109.1C9—C8—H8120.3
H2A—C2—H2B107.8C7—C8—H8120.3
C3i—C3—C2114.0 (3)C8—C9—C10120.6 (3)
C3i—C3—H3A108.8C8—C9—H9119.7
C2—C3—H3A108.8C10—C9—H9119.7
C3i—C3—H3B108.8C5—C10—C9120.7 (3)
C2—C3—H3B108.8C5—C10—H10119.7
H3A—C3—H3B107.7C9—C10—H10119.7
C2—N2—C1—N1178.3 (2)O1—C4—C5—C6−166.1 (3)
C2—N2—C1—S1−0.9 (4)N1—C4—C5—C613.4 (4)
C4—N1—C1—N2−0.3 (4)C10—C5—C6—C70.5 (5)
C4—N1—C1—S1179.0 (2)C4—C5—C6—C7179.0 (3)
C1—N2—C2—C388.5 (3)C5—C6—C7—C80.2 (5)
N2—C2—C3—C3i64.4 (4)C6—C7—C8—C9−0.6 (5)
C1—N1—C4—O14.7 (5)C7—C8—C9—C100.3 (5)
C1—N1—C4—C5−174.8 (3)C6—C5—C10—C9−0.8 (5)
O1—C4—C5—C1012.4 (4)C4—C5—C10—C9−179.4 (3)
N1—C4—C5—C10−168.1 (3)C8—C9—C10—C50.4 (5)
D—H···AD—HH···AD···AD—H···A
N2—H2···O10.862.062.717 (3)133
C2—H2A···S10.972.683.060 (3)103
C2—H2B···S1ii0.972.723.468 (3)134
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O10.862.062.717 (3)133
C2—H2A⋯S10.972.683.060 (3)103
C2—H2B⋯S1i0.972.723.468 (3)134

Symmetry code: (i) .

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