Literature DB >> 21754546

(±)-1,2-Bis(N'-benzoyl-thio-ureido)cyclo-hexa-ne.

Juliana Jumal, Abdul Razak Ibrahim, Bohari M Yamin.   

Abstract

In the title compound, C(22)H(24)N(4)O(2)S(2), the two thio-urea segments of the side-arm groups are inclined at a dihedral angle of 73.09 (9)°. The central cyclo-hexane bridge adopts a chair conformation. The mol-ecule is stabilized by N-H⋯O intra-molecular hydrogen bonds forming S(6) rings, and N-H⋯O and N-H⋯S inter-molecular hydrogen bonds forming infinite chains developing parallel to the b axis.

Entities:  

Year:  2011        PMID: 21754546      PMCID: PMC3089146          DOI: 10.1107/S1600536811014991

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Yusof et al. (2008 ▶); Thiam et al. (2008 ▶). For bond-length data, see Allen et al. (1987 ▶). For a description of hydrogen-bonding patterns, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C22H24N4O2S2 M = 440.57 Monoclinic, a = 19.725 (6) Å b = 11.054 (3) Å c = 20.700 (5) Å β = 91.252 (9)° V = 4512 (2) Å3 Z = 8 Mo Kα radiation μ = 0.26 mm−1 T = 298 K 0.45 × 0.39 × 0.20 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.891, T max = 0.950 16892 measured reflections 4212 independent reflections 3334 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.145 S = 1.11 4212 reflections 272 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL, PARST (Nardelli, 1995 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811014991/dn2675sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811014991/dn2675Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811014991/dn2675Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H24N4O2S2F(000) = 1856
Mr = 440.57Dx = 1.297 Mg m3
Monoclinic, C2/cMelting point = 495.3–497.3 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 19.725 (6) ÅCell parameters from 4375 reflections
b = 11.054 (3) Åθ = 2.0–25.2°
c = 20.700 (5) ŵ = 0.26 mm1
β = 91.252 (9)°T = 298 K
V = 4512 (2) Å3Block, colourless
Z = 80.45 × 0.39 × 0.20 mm
Bruker SMART APEX CCD area-detector diffractometer4212 independent reflections
Radiation source: fine-focus sealed tube3334 reflections with I > 2σ(I)
graphiteRint = 0.043
Detector resolution: 83.66 pixels mm-1θmax = 25.5°, θmin = 2.0°
ω scansh = −23→23
Absorption correction: multi-scan (SADABS; Bruker, 2000)k = −13→13
Tmin = 0.891, Tmax = 0.950l = −24→25
16892 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0596P)2 + 4.3773P] where P = (Fo2 + 2Fc2)/3
4212 reflections(Δ/σ)max = 0.001
272 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.02397 (4)0.38387 (8)0.42308 (5)0.0633 (3)
S20.02746 (4)0.92533 (8)0.41333 (4)0.0586 (3)
O1−0.09838 (10)0.7174 (2)0.36607 (12)0.0702 (7)
O20.14844 (9)0.71111 (18)0.56241 (9)0.0492 (5)
N1−0.07970 (10)0.5330 (2)0.41058 (11)0.0468 (6)
H1A−0.10040.47300.42790.056*
N20.02222 (10)0.6069 (2)0.37479 (11)0.0454 (6)
H2A0.00010.67230.36640.054*
N30.12087 (11)0.7590 (2)0.43944 (10)0.0450 (6)
H3A0.14560.72170.46780.054*
N40.08148 (11)0.86601 (19)0.52667 (10)0.0410 (5)
H4A0.05910.92810.53940.049*
C1−0.21028 (19)0.5515 (3)0.4688 (2)0.0898 (13)
H1B−0.17910.49900.48810.108*
C2−0.2756 (2)0.5544 (4)0.4898 (3)0.124 (2)
H2B−0.28840.50350.52310.149*
C3−0.32249 (19)0.6311 (5)0.4623 (3)0.1007 (17)
H3B−0.36680.63240.47670.121*
C4−0.3036 (2)0.7045 (5)0.4142 (2)0.1030 (17)
H4B−0.33520.75640.39510.124*
C5−0.23709 (17)0.7038 (4)0.39271 (18)0.0871 (13)
H5A−0.22450.75650.36010.104*
C6−0.19050 (14)0.6265 (3)0.41907 (15)0.0523 (8)
C7−0.11937 (14)0.6315 (3)0.39623 (14)0.0477 (7)
C8−0.01047 (13)0.5160 (3)0.40108 (13)0.0440 (6)
C90.09410 (13)0.6023 (3)0.35922 (13)0.0446 (6)
H9A0.11600.54200.38740.054*
C100.10317 (15)0.5628 (3)0.28926 (15)0.0606 (8)
H10A0.08190.48460.28250.073*
H10B0.08100.62050.26050.073*
C110.17797 (17)0.5547 (4)0.27354 (17)0.0723 (10)
H11A0.19930.49190.29970.087*
H11B0.18270.53300.22850.087*
C120.21279 (16)0.6735 (4)0.28648 (16)0.0701 (10)
H12A0.19470.73420.25700.084*
H12B0.26090.66520.27860.084*
C130.20305 (14)0.7155 (4)0.35590 (15)0.0631 (9)
H13A0.22380.79440.36190.076*
H13B0.22550.65940.38530.076*
C140.12781 (12)0.7232 (3)0.37194 (12)0.0434 (6)
H14A0.10610.78450.34420.052*
C150.07964 (13)0.8440 (2)0.46047 (12)0.0419 (6)
C160.11438 (12)0.8012 (2)0.57403 (13)0.0398 (6)
C170.10748 (12)0.8470 (3)0.64079 (13)0.0419 (6)
C180.10957 (15)0.9688 (3)0.65517 (14)0.0526 (7)
H18A0.11431.02530.62230.063*
C190.10464 (18)1.0065 (3)0.71809 (17)0.0713 (10)
H19A0.10661.08860.72780.086*
C200.09689 (18)0.9240 (4)0.76659 (17)0.0742 (10)
H20A0.09330.95040.80900.089*
C210.09432 (17)0.8037 (4)0.75319 (15)0.0673 (9)
H21A0.08840.74820.78630.081*
C220.10055 (15)0.7639 (3)0.69031 (14)0.0546 (8)
H22A0.10010.68150.68130.065*
U11U22U33U12U13U23
S10.0446 (4)0.0520 (5)0.0936 (7)0.0080 (3)0.0057 (4)0.0092 (4)
S20.0634 (5)0.0719 (6)0.0406 (4)0.0246 (4)0.0012 (3)0.0038 (4)
O10.0475 (12)0.0653 (15)0.0982 (18)0.0125 (11)0.0131 (12)0.0236 (13)
O20.0491 (11)0.0522 (12)0.0463 (11)0.0115 (9)−0.0001 (9)−0.0018 (9)
N10.0325 (11)0.0479 (13)0.0602 (15)0.0014 (10)0.0076 (10)0.0023 (11)
N20.0320 (11)0.0500 (13)0.0544 (14)0.0050 (10)0.0054 (10)0.0016 (11)
N30.0399 (12)0.0545 (14)0.0405 (13)0.0060 (11)0.0009 (10)−0.0002 (11)
N40.0438 (12)0.0408 (12)0.0387 (12)0.0064 (10)0.0041 (9)0.0007 (10)
C10.067 (2)0.060 (2)0.144 (4)0.0126 (18)0.050 (2)0.012 (2)
C20.086 (3)0.073 (3)0.217 (6)0.002 (2)0.090 (4)0.002 (3)
C30.045 (2)0.112 (4)0.147 (5)−0.008 (2)0.030 (2)−0.065 (3)
C40.051 (2)0.175 (5)0.083 (3)0.042 (3)−0.009 (2)−0.032 (3)
C50.053 (2)0.141 (4)0.067 (2)0.036 (2)0.0017 (17)0.002 (2)
C60.0376 (15)0.0555 (18)0.064 (2)0.0017 (13)0.0041 (13)−0.0204 (15)
C70.0389 (14)0.0502 (18)0.0541 (18)0.0014 (13)0.0022 (13)−0.0044 (14)
C80.0365 (13)0.0499 (16)0.0456 (16)0.0021 (12)0.0004 (11)−0.0064 (13)
C90.0335 (13)0.0547 (17)0.0459 (16)0.0058 (12)0.0061 (11)−0.0004 (13)
C100.0539 (18)0.072 (2)0.0557 (19)0.0005 (16)0.0075 (14)−0.0163 (16)
C110.060 (2)0.100 (3)0.057 (2)0.018 (2)0.0176 (16)−0.0145 (19)
C120.0414 (16)0.111 (3)0.059 (2)0.0034 (18)0.0204 (14)−0.005 (2)
C130.0391 (16)0.093 (3)0.0574 (19)−0.0060 (16)0.0096 (13)−0.0071 (18)
C140.0352 (13)0.0594 (18)0.0358 (14)0.0029 (12)0.0063 (11)−0.0006 (13)
C150.0370 (13)0.0480 (16)0.0411 (15)−0.0013 (12)0.0077 (11)0.0026 (13)
C160.0327 (13)0.0414 (15)0.0453 (15)−0.0023 (11)0.0028 (11)0.0035 (12)
C170.0343 (13)0.0500 (16)0.0413 (15)0.0019 (12)−0.0009 (11)0.0017 (13)
C180.0573 (17)0.0518 (18)0.0485 (17)0.0038 (14)−0.0049 (13)−0.0018 (14)
C190.089 (3)0.064 (2)0.061 (2)0.0148 (19)−0.0099 (18)−0.0170 (18)
C200.082 (2)0.096 (3)0.0451 (19)0.016 (2)0.0042 (17)−0.018 (2)
C210.073 (2)0.088 (3)0.0418 (18)−0.0025 (19)0.0034 (15)0.0087 (17)
C220.0590 (18)0.0589 (19)0.0457 (17)−0.0045 (15)−0.0003 (14)0.0005 (15)
S1—C81.670 (3)C9—C141.513 (4)
S2—C151.666 (3)C9—C101.527 (4)
O1—C71.215 (3)C9—H9A0.9800
O2—C161.228 (3)C10—C111.521 (4)
N1—C71.370 (4)C10—H10A0.9700
N1—C81.397 (3)C10—H10B0.9700
N1—H1A0.8600C11—C121.504 (5)
N2—C81.318 (3)C11—H11A0.9700
N2—C91.462 (3)C11—H11B0.9700
N2—H2A0.8600C12—C131.526 (4)
N3—C151.323 (3)C12—H12A0.9700
N3—C141.462 (3)C12—H12B0.9700
N3—H3A0.8600C13—C141.530 (4)
N4—C161.366 (3)C13—H13A0.9700
N4—C151.392 (3)C13—H13B0.9700
N4—H4A0.8600C14—H14A0.9800
C1—C21.369 (5)C16—C171.481 (4)
C1—C61.385 (5)C17—C181.379 (4)
C1—H1B0.9300C17—C221.386 (4)
C2—C31.369 (7)C18—C191.373 (4)
C2—H2B0.9300C18—H18A0.9300
C3—C41.342 (7)C19—C201.367 (5)
C3—H3B0.9300C19—H19A0.9300
C4—C51.394 (5)C20—C211.359 (5)
C4—H4B0.9300C20—H20A0.9300
C5—C61.360 (5)C21—C221.382 (4)
C5—H5A0.9300C21—H21A0.9300
C6—C71.491 (4)C22—H22A0.9300
C7—N1—C8129.2 (2)C12—C11—C10110.6 (3)
C7—N1—H1A115.4C12—C11—H11A109.5
C8—N1—H1A115.4C10—C11—H11A109.5
C8—N2—C9123.4 (2)C12—C11—H11B109.5
C8—N2—H2A118.3C10—C11—H11B109.5
C9—N2—H2A118.3H11A—C11—H11B108.1
C15—N3—C14125.3 (2)C11—C12—C13111.5 (3)
C15—N3—H3A117.4C11—C12—H12A109.3
C14—N3—H3A117.4C13—C12—H12A109.3
C16—N4—C15128.1 (2)C11—C12—H12B109.3
C16—N4—H4A116.0C13—C12—H12B109.3
C15—N4—H4A116.0H12A—C12—H12B108.0
C2—C1—C6120.2 (4)C12—C13—C14111.3 (2)
C2—C1—H1B119.9C12—C13—H13A109.4
C6—C1—H1B119.9C14—C13—H13A109.4
C1—C2—C3121.0 (5)C12—C13—H13B109.4
C1—C2—H2B119.5C14—C13—H13B109.4
C3—C2—H2B119.5H13A—C13—H13B108.0
C4—C3—C2119.1 (4)N3—C14—C9110.8 (2)
C4—C3—H3B120.5N3—C14—C13109.5 (2)
C2—C3—H3B120.5C9—C14—C13109.8 (2)
C3—C4—C5120.8 (4)N3—C14—H14A108.9
C3—C4—H4B119.6C9—C14—H14A108.9
C5—C4—H4B119.6C13—C14—H14A108.9
C6—C5—C4120.5 (4)N3—C15—N4116.4 (2)
C6—C5—H5A119.8N3—C15—S2124.6 (2)
C4—C5—H5A119.8N4—C15—S2119.00 (19)
C5—C6—C1118.4 (3)O2—C16—N4122.5 (2)
C5—C6—C7118.8 (3)O2—C16—C17121.5 (2)
C1—C6—C7122.7 (3)N4—C16—C17116.0 (2)
O1—C7—N1122.3 (3)C18—C17—C22119.4 (3)
O1—C7—C6121.7 (3)C18—C17—C16122.2 (3)
N1—C7—C6116.0 (3)C22—C17—C16118.4 (3)
N2—C8—N1116.4 (2)C19—C18—C17119.9 (3)
N2—C8—S1125.4 (2)C19—C18—H18A120.0
N1—C8—S1118.2 (2)C17—C18—H18A120.0
N2—C9—C14110.8 (2)C20—C19—C18120.4 (3)
N2—C9—C10110.7 (2)C20—C19—H19A119.8
C14—C9—C10110.9 (2)C18—C19—H19A119.8
N2—C9—H9A108.1C21—C20—C19120.4 (3)
C14—C9—H9A108.1C21—C20—H20A119.8
C10—C9—H9A108.1C19—C20—H20A119.8
C11—C10—C9110.8 (2)C20—C21—C22120.0 (3)
C11—C10—H10A109.5C20—C21—H21A120.0
C9—C10—H10A109.5C22—C21—H21A120.0
C11—C10—H10B109.5C21—C22—C17119.8 (3)
C9—C10—H10B109.5C21—C22—H22A120.1
H10A—C10—H10B108.1C17—C22—H22A120.1
C6—C1—C2—C3−0.2 (7)C15—N3—C14—C13132.9 (3)
C1—C2—C3—C4−0.2 (8)N2—C9—C14—N358.4 (3)
C2—C3—C4—C5−0.5 (7)C10—C9—C14—N3−178.2 (2)
C3—C4—C5—C61.5 (7)N2—C9—C14—C13179.4 (2)
C4—C5—C6—C1−1.8 (6)C10—C9—C14—C13−57.2 (3)
C4—C5—C6—C7−178.0 (4)C12—C13—C14—N3177.7 (3)
C2—C1—C6—C51.2 (6)C12—C13—C14—C955.9 (4)
C2—C1—C6—C7177.2 (4)C14—N3—C15—N4−178.8 (2)
C8—N1—C7—O17.3 (5)C14—N3—C15—S20.5 (4)
C8—N1—C7—C6−173.5 (3)C16—N4—C15—N3−8.8 (4)
C5—C6—C7—O116.3 (5)C16—N4—C15—S2171.9 (2)
C1—C6—C7—O1−159.7 (3)C15—N4—C16—O20.5 (4)
C5—C6—C7—N1−162.9 (3)C15—N4—C16—C17179.7 (2)
C1—C6—C7—N121.1 (4)O2—C16—C17—C18138.7 (3)
C9—N2—C8—N1−177.5 (2)N4—C16—C17—C18−40.5 (3)
C9—N2—C8—S12.1 (4)O2—C16—C17—C22−39.6 (4)
C7—N1—C8—N20.2 (4)N4—C16—C17—C22141.3 (3)
C7—N1—C8—S1−179.4 (2)C22—C17—C18—C19−0.1 (4)
C8—N2—C9—C14−143.0 (3)C16—C17—C18—C19−178.4 (3)
C8—N2—C9—C1093.5 (3)C17—C18—C19—C20−0.7 (5)
N2—C9—C10—C11−178.4 (3)C18—C19—C20—C210.3 (5)
C14—C9—C10—C1158.1 (4)C19—C20—C21—C220.9 (5)
C9—C10—C11—C12−56.7 (4)C20—C21—C22—C17−1.8 (5)
C10—C11—C12—C1355.7 (4)C18—C17—C22—C211.4 (4)
C11—C12—C13—C14−55.7 (4)C16—C17—C22—C21179.7 (3)
C15—N3—C14—C9−105.9 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O10.862.012.677 (3)134
N3—H3A···O20.861.962.645 (3)136
N1—H1A···O2i0.862.263.077 (3)159
N4—H4A···S2ii0.862.563.405 (3)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O10.862.012.677 (3)134
N3—H3A⋯O20.861.962.645 (3)136
N1—H1A⋯O2i0.862.263.077 (3)159
N4—H4A⋯S2ii0.862.563.405 (3)166

Symmetry codes: (i) ; (ii) .

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