Literature DB >> 21202611

3,3'-Bis(4-nitro-phen-yl)-1,1'-(p-phenyl-ene)dithio-urea dimethyl sulfoxide disolvate.

Wen-Kui Dong1, Hai-Bo Yan, Lan-Qin Chai, Zhong-Wu Lv, Chun-Yu Zhao.   

Abstract

The asymmetric unit of the title compound, C(22)H(16)N(6)O(6)S(2)·2C(2)H(6)OS, consists of one half-mol-ecule of the centrosymmetric thiourea derivative and one molecule of dimethyl sulfoxide (DMSO). The carbonyl group forms an intra-molecular hydrogen bond with the NH group, creating a six-membered (C-N-C-N-H⋯O) ring. Two other N-H⋯O hydro-gen bonds link one mol-ecule of the thio-urea to two mol-ecules of DMSO.

Entities:  

Year:  2008        PMID: 21202611      PMCID: PMC2961527          DOI: 10.1107/S160053680801430X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Burrows et al. (1997 ▶); Dong et al. (2006 ▶, 2007 ▶); Foss et al. (2004 ▶); Valdés-Martínez et al. (2000 ▶, 2004 ▶); Zhang et al. (2006 ▶); Huang et al. (2006 ▶).

Experimental

Crystal data

C22H16N6O6S2·2C2n class="CellLine">H6OS M = 680.78 Monoclinic, a = 11.6949 (18) Å b = 6.6916 (11) Å c = 20.449 (2) Å β = 106.353 (2)° V = 1535.5 (4) Å3 Z = 2 Mo Kα radiation μ = 0.37 mm−1 T = 298 (2) K 0.33 × 0.17 × 0.11 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.888, T max = 0.961 7318 measured reflections 2684 independent reflections 1547 reflections with I > 2σ(I) R int = 0.097

Refinement

R[F 2 > 2σ(F 2)] = 0.069 wR(F 2) = 0.199 S = 0.96 2684 reflections 199 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.43 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053680801430X/fl2195sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680801430X/fl2195Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H16N6O6S2·2C2H6OSF000 = 708
Mr = 680.78Dx = 1.472 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
a = 11.6949 (18) ÅCell parameters from 1517 reflections
b = 6.6916 (11) Åθ = 3.3–25.3º
c = 20.449 (2) ŵ = 0.37 mm1
β = 106.353 (2)ºT = 298 (2) K
V = 1535.5 (4) Å3Needle-shaped, yellow
Z = 20.33 × 0.17 × 0.11 mm
Bruker SMART CCD area-detector diffractometer2684 independent reflections
Radiation source: fine-focus sealed tube1547 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.097
T = 298(2) Kθmax = 25.0º
φ and ω scansθmin = 1.8º
Absorption correction: multi-scan(SADABS; Sheldrick, 1996)h = −11→13
Tmin = 0.888, Tmax = 0.961k = −7→7
7318 measured reflectionsl = −24→24
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.069H-atom parameters constrained
wR(F2) = 0.199  w = 1/[σ2(Fo2) + (0.1071P)2] where P = (Fo2 + 2Fc2)/3
S = 0.97(Δ/σ)max < 0.001
2684 reflectionsΔρmax = 0.44 e Å3
199 parametersΔρmin = −0.43 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.7828 (3)0.3522 (5)0.51603 (16)0.0505 (8)
H10.76730.27240.54540.061*
N20.8719 (3)0.6436 (5)0.49516 (16)0.0507 (9)
H20.83430.61090.45410.061*
N30.4791 (3)−0.4240 (5)0.36972 (18)0.0565 (9)
O10.7411 (3)0.4141 (5)0.40259 (14)0.0614 (8)
O20.4552 (3)−0.4678 (5)0.31005 (16)0.0733 (10)
O30.4566 (3)−0.5286 (5)0.41241 (17)0.0776 (10)
O40.7382 (3)0.1230 (6)0.62917 (14)0.0782 (10)
S10.91836 (14)0.5258 (2)0.62543 (6)0.0858 (6)
S20.82807 (12)0.0691 (2)0.69426 (6)0.0711 (5)
C10.8572 (4)0.5173 (6)0.5429 (2)0.0502 (10)
C20.9391 (3)0.8218 (6)0.5010 (2)0.0454 (10)
C30.9492 (4)0.9013 (7)0.4410 (2)0.0557 (11)
H30.91410.83440.40040.067*
C41.0090 (4)1.0755 (7)0.4389 (2)0.0562 (11)
H41.01501.12510.39750.067*
C50.7326 (3)0.3047 (6)0.44901 (19)0.0455 (10)
C60.6642 (3)0.1137 (6)0.43250 (18)0.0443 (9)
C70.6443 (4)−0.0164 (6)0.4804 (2)0.0501 (10)
H70.67230.01410.52650.060*
C80.5824 (4)−0.1933 (7)0.4596 (2)0.0548 (11)
H80.5674−0.28100.49150.066*
C90.5441 (3)−0.2359 (6)0.39199 (19)0.0461 (10)
C100.5631 (4)−0.1108 (7)0.3439 (2)0.0600 (12)
H100.5363−0.14380.29790.072*
C110.6225 (4)0.0652 (7)0.3643 (2)0.0592 (12)
H110.63490.15310.33180.071*
C120.8181 (5)0.2507 (9)0.7540 (2)0.0870 (17)
H12A0.84480.37690.74140.131*
H12B0.86710.21240.79830.131*
H12C0.73680.26240.75500.131*
C130.7650 (6)−0.1309 (11)0.7298 (3)0.120 (2)
H13A0.6928−0.08660.73880.180*
H13B0.8206−0.17360.77160.180*
H13C0.7477−0.24050.69830.180*
U11U22U33U12U13U23
N10.050 (2)0.046 (2)0.0538 (19)−0.0108 (17)0.0109 (15)0.0002 (17)
N20.0460 (19)0.047 (2)0.0551 (19)−0.0107 (16)0.0077 (15)−0.0008 (17)
N30.064 (2)0.048 (2)0.055 (2)−0.0041 (18)0.0123 (18)0.0011 (18)
O10.0683 (19)0.057 (2)0.0569 (17)−0.0188 (15)0.0140 (14)0.0064 (15)
O20.094 (2)0.065 (2)0.0564 (19)−0.0207 (18)0.0137 (17)−0.0127 (16)
O30.100 (3)0.064 (2)0.064 (2)−0.0294 (19)0.0153 (18)0.0067 (17)
O40.090 (2)0.090 (3)0.0495 (18)−0.021 (2)0.0117 (16)0.0026 (17)
S10.1133 (12)0.0803 (10)0.0544 (8)−0.0440 (9)0.0080 (7)−0.0012 (6)
S20.0732 (9)0.0804 (10)0.0590 (7)0.0026 (7)0.0174 (6)−0.0010 (6)
C10.043 (2)0.048 (3)0.059 (3)−0.0024 (19)0.0118 (19)−0.002 (2)
C20.035 (2)0.040 (2)0.060 (2)−0.0015 (17)0.0101 (17)0.0030 (19)
C30.059 (3)0.049 (3)0.054 (2)−0.009 (2)0.0082 (19)−0.007 (2)
C40.064 (3)0.055 (3)0.050 (2)−0.011 (2)0.016 (2)−0.002 (2)
C50.035 (2)0.048 (3)0.050 (2)−0.0030 (18)0.0056 (17)0.001 (2)
C60.040 (2)0.047 (2)0.046 (2)−0.0016 (18)0.0121 (17)0.0012 (18)
C70.051 (2)0.053 (3)0.042 (2)−0.006 (2)0.0060 (18)−0.0026 (19)
C80.062 (3)0.052 (3)0.053 (2)−0.008 (2)0.021 (2)0.004 (2)
C90.046 (2)0.042 (2)0.047 (2)−0.0039 (18)0.0067 (17)0.0017 (19)
C100.073 (3)0.061 (3)0.042 (2)−0.018 (2)0.011 (2)−0.001 (2)
C110.073 (3)0.060 (3)0.046 (2)−0.023 (2)0.017 (2)0.008 (2)
C120.101 (4)0.097 (4)0.059 (3)0.013 (3)0.016 (3)−0.001 (3)
C130.158 (6)0.091 (5)0.100 (4)−0.022 (5)0.020 (4)0.024 (4)
N1—C51.368 (4)C4—H40.9300
N1—C11.418 (5)C5—C61.495 (6)
N1—H10.8600C6—C71.379 (6)
N2—C11.338 (5)C6—C111.380 (5)
N2—C21.414 (5)C7—C81.390 (6)
N2—H20.8600C7—H70.9300
N3—O31.204 (4)C8—C91.358 (5)
N3—O21.209 (4)C8—H80.9300
N3—C91.475 (5)C9—C101.356 (6)
O1—C51.225 (5)C10—C111.371 (6)
O4—S21.490 (3)C10—H100.9300
S1—C11.638 (4)C11—H110.9300
S2—C121.750 (5)C12—H12A0.9600
S2—C131.779 (6)C12—H12B0.9600
C2—C31.372 (5)C12—H12C0.9600
C2—C4i1.389 (5)C13—H13A0.9600
C3—C41.367 (6)C13—H13B0.9600
C3—H30.9300C13—H13C0.9600
C4—C2i1.389 (5)
C5—N1—C1127.8 (3)C11—C6—C5116.4 (3)
C5—N1—H1116.1C6—C7—C8119.9 (4)
C1—N1—H1116.1C6—C7—H7120.1
C1—N2—C2130.8 (3)C8—C7—H7120.1
C1—N2—H2114.6C9—C8—C7119.0 (4)
C2—N2—H2114.6C9—C8—H8120.5
O3—N3—O2123.7 (4)C7—C8—H8120.5
O3—N3—C9118.1 (3)C10—C9—C8122.3 (4)
O2—N3—C9118.1 (4)C10—C9—N3118.6 (3)
O4—S2—C12106.6 (2)C8—C9—N3119.2 (4)
O4—S2—C13106.1 (2)C9—C10—C11118.8 (4)
C12—S2—C1396.9 (3)C9—C10—H10120.6
N2—C1—N1113.6 (3)C11—C10—H10120.6
N2—C1—S1128.4 (3)C10—C11—C6121.0 (4)
N1—C1—S1117.9 (3)C10—C11—H11119.5
C3—C2—C4i118.2 (4)C6—C11—H11119.5
C3—C2—N2115.9 (4)S2—C12—H12A109.5
C4i—C2—N2125.8 (4)S2—C12—H12B109.5
C4—C3—C2122.1 (4)H12A—C12—H12B109.5
C4—C3—H3118.9S2—C12—H12C109.5
C2—C3—H3118.9H12A—C12—H12C109.5
C3—C4—C2i119.6 (4)H12B—C12—H12C109.5
C3—C4—H4120.2S2—C13—H13A109.5
C2i—C4—H4120.2S2—C13—H13B109.5
O1—C5—N1122.2 (4)H13A—C13—H13B109.5
O1—C5—C6119.4 (3)S2—C13—H13C109.5
N1—C5—C6118.4 (4)H13A—C13—H13C109.5
C7—C6—C11119.1 (4)H13B—C13—H13C109.5
C7—C6—C5124.5 (3)
C2—N2—C1—N1−179.4 (4)C11—C6—C7—C8−0.3 (6)
C2—N2—C1—S1−2.6 (7)C5—C6—C7—C8−178.1 (4)
C5—N1—C1—N24.2 (6)C6—C7—C8—C91.0 (6)
C5—N1—C1—S1−173.0 (3)C7—C8—C9—C10−0.7 (7)
C1—N2—C2—C3170.9 (4)C7—C8—C9—N3179.6 (4)
C1—N2—C2—C4i−11.5 (7)O3—N3—C9—C10−175.8 (4)
C4i—C2—C3—C40.6 (7)O2—N3—C9—C106.8 (6)
N2—C2—C3—C4178.4 (4)O3—N3—C9—C84.0 (6)
C2—C3—C4—C2i−0.6 (7)O2—N3—C9—C8−173.4 (4)
C1—N1—C5—O1−5.3 (6)C8—C9—C10—C11−0.3 (7)
C1—N1—C5—C6175.5 (4)N3—C9—C10—C11179.4 (4)
O1—C5—C6—C7−177.0 (4)C9—C10—C11—C61.1 (7)
N1—C5—C6—C72.3 (6)C7—C6—C11—C10−0.7 (7)
O1—C5—C6—C115.2 (6)C5—C6—C11—C10177.2 (4)
N1—C5—C6—C11−175.6 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O40.862.092.942 (5)169
N2—H2···O10.861.842.579 (5)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O40.862.092.942 (5)169
N2—H2⋯O10.861.842.579 (5)143
  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Yu-Jie Ding; Jian Yao; Jian-Chao Wu; Wen-Kui Dong; Jun-Feng Tong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-18

2.  4-Chloro-N-[N-(6-methyl-2-pyrid-yl)car-bamo-thio-yl]benzamide.

Authors:  Gün Binzet; Fatih Mehmet Emen; Ulrich Flörke; Tuncay Yeşilkaynak; Nevzat Külcü; Hakan Arslan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-10

3.  3,3'-Dibenzoyl-1,1'-dibenzyl-1,1'-(ethane-1,2-di-yl)-dithio-urea.

Authors:  Andrzej Okuniewski; Jaroslaw Chojnacki; Barbara Becker
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-04

4.  (Z)-4-Chloro-N-(1-{2-[3-(4-chloro-benzoyl)ureido]eth-yl}imidazolidin-2-yl-idene)benzamide.

Authors:  Dalina Adan; Suhaila Sapari; Siti Nadiah Halim; Bohari M Yamin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-27
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