| Literature DB >> 21202611 |
Wen-Kui Dong1, Hai-Bo Yan, Lan-Qin Chai, Zhong-Wu Lv, Chun-Yu Zhao.
Abstract
The asymmetric unit of the title compound, C(22)H(16)N(6)O(6)S(2)·2C(2)H(6)OS, consists of one half-mol-ecule of the centrosymmetric thiourea derivative and one molecule of dimethyl sulfoxide (DMSO). The carbonyl group forms an intra-molecular hydrogen bond with the NH group, creating a six-membered (C-N-C-N-H⋯O) ring. Two other N-H⋯O hydro-gen bonds link one mol-ecule of the thio-urea to two mol-ecules of DMSO.Entities:
Year: 2008 PMID: 21202611 PMCID: PMC2961527 DOI: 10.1107/S160053680801430X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C22H16N6O6S2·2C2H6OS | |
| Monoclinic, | Mo |
| Cell parameters from 1517 reflections | |
| θ = 3.3–25.3º | |
| µ = 0.37 mm−1 | |
| β = 106.353 (2)º | |
| Needle-shaped, yellow | |
| 0.33 × 0.17 × 0.11 mm |
| Bruker SMART CCD area-detector diffractometer | 2684 independent reflections |
| Radiation source: fine-focus sealed tube | 1547 reflections with |
| Monochromator: graphite | |
| θmax = 25.0º | |
| φ and ω scans | θmin = 1.8º |
| Absorption correction: multi-scan(SADABS; Sheldrick, 1996) | |
| 7318 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| | |
| (Δ/σ)max < 0.001 | |
| 2684 reflections | Δρmax = 0.44 e Å−3 |
| 199 parameters | Δρmin = −0.43 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.7828 (3) | 0.3522 (5) | 0.51603 (16) | 0.0505 (8) | |
| H1 | 0.7673 | 0.2724 | 0.5454 | 0.061* | |
| N2 | 0.8719 (3) | 0.6436 (5) | 0.49516 (16) | 0.0507 (9) | |
| H2 | 0.8343 | 0.6109 | 0.4541 | 0.061* | |
| N3 | 0.4791 (3) | −0.4240 (5) | 0.36972 (18) | 0.0565 (9) | |
| O1 | 0.7411 (3) | 0.4141 (5) | 0.40259 (14) | 0.0614 (8) | |
| O2 | 0.4552 (3) | −0.4678 (5) | 0.31005 (16) | 0.0733 (10) | |
| O3 | 0.4566 (3) | −0.5286 (5) | 0.41241 (17) | 0.0776 (10) | |
| O4 | 0.7382 (3) | 0.1230 (6) | 0.62917 (14) | 0.0782 (10) | |
| S1 | 0.91836 (14) | 0.5258 (2) | 0.62543 (6) | 0.0858 (6) | |
| S2 | 0.82807 (12) | 0.0691 (2) | 0.69426 (6) | 0.0711 (5) | |
| C1 | 0.8572 (4) | 0.5173 (6) | 0.5429 (2) | 0.0502 (10) | |
| C2 | 0.9391 (3) | 0.8218 (6) | 0.5010 (2) | 0.0454 (10) | |
| C3 | 0.9492 (4) | 0.9013 (7) | 0.4410 (2) | 0.0557 (11) | |
| H3 | 0.9141 | 0.8344 | 0.4004 | 0.067* | |
| C4 | 1.0090 (4) | 1.0755 (7) | 0.4389 (2) | 0.0562 (11) | |
| H4 | 1.0150 | 1.1251 | 0.3975 | 0.067* | |
| C5 | 0.7326 (3) | 0.3047 (6) | 0.44901 (19) | 0.0455 (10) | |
| C6 | 0.6642 (3) | 0.1137 (6) | 0.43250 (18) | 0.0443 (9) | |
| C7 | 0.6443 (4) | −0.0164 (6) | 0.4804 (2) | 0.0501 (10) | |
| H7 | 0.6723 | 0.0141 | 0.5265 | 0.060* | |
| C8 | 0.5824 (4) | −0.1933 (7) | 0.4596 (2) | 0.0548 (11) | |
| H8 | 0.5674 | −0.2810 | 0.4915 | 0.066* | |
| C9 | 0.5441 (3) | −0.2359 (6) | 0.39199 (19) | 0.0461 (10) | |
| C10 | 0.5631 (4) | −0.1108 (7) | 0.3439 (2) | 0.0600 (12) | |
| H10 | 0.5363 | −0.1438 | 0.2979 | 0.072* | |
| C11 | 0.6225 (4) | 0.0652 (7) | 0.3643 (2) | 0.0592 (12) | |
| H11 | 0.6349 | 0.1531 | 0.3318 | 0.071* | |
| C12 | 0.8181 (5) | 0.2507 (9) | 0.7540 (2) | 0.0870 (17) | |
| H12A | 0.8448 | 0.3769 | 0.7414 | 0.131* | |
| H12B | 0.8671 | 0.2124 | 0.7983 | 0.131* | |
| H12C | 0.7368 | 0.2624 | 0.7550 | 0.131* | |
| C13 | 0.7650 (6) | −0.1309 (11) | 0.7298 (3) | 0.120 (2) | |
| H13A | 0.6928 | −0.0866 | 0.7388 | 0.180* | |
| H13B | 0.8206 | −0.1736 | 0.7716 | 0.180* | |
| H13C | 0.7477 | −0.2405 | 0.6983 | 0.180* |
| N1 | 0.050 (2) | 0.046 (2) | 0.0538 (19) | −0.0108 (17) | 0.0109 (15) | 0.0002 (17) |
| N2 | 0.0460 (19) | 0.047 (2) | 0.0551 (19) | −0.0107 (16) | 0.0077 (15) | −0.0008 (17) |
| N3 | 0.064 (2) | 0.048 (2) | 0.055 (2) | −0.0041 (18) | 0.0123 (18) | 0.0011 (18) |
| O1 | 0.0683 (19) | 0.057 (2) | 0.0569 (17) | −0.0188 (15) | 0.0140 (14) | 0.0064 (15) |
| O2 | 0.094 (2) | 0.065 (2) | 0.0564 (19) | −0.0207 (18) | 0.0137 (17) | −0.0127 (16) |
| O3 | 0.100 (3) | 0.064 (2) | 0.064 (2) | −0.0294 (19) | 0.0153 (18) | 0.0067 (17) |
| O4 | 0.090 (2) | 0.090 (3) | 0.0495 (18) | −0.021 (2) | 0.0117 (16) | 0.0026 (17) |
| S1 | 0.1133 (12) | 0.0803 (10) | 0.0544 (8) | −0.0440 (9) | 0.0080 (7) | −0.0012 (6) |
| S2 | 0.0732 (9) | 0.0804 (10) | 0.0590 (7) | 0.0026 (7) | 0.0174 (6) | −0.0010 (6) |
| C1 | 0.043 (2) | 0.048 (3) | 0.059 (3) | −0.0024 (19) | 0.0118 (19) | −0.002 (2) |
| C2 | 0.035 (2) | 0.040 (2) | 0.060 (2) | −0.0015 (17) | 0.0101 (17) | 0.0030 (19) |
| C3 | 0.059 (3) | 0.049 (3) | 0.054 (2) | −0.009 (2) | 0.0082 (19) | −0.007 (2) |
| C4 | 0.064 (3) | 0.055 (3) | 0.050 (2) | −0.011 (2) | 0.016 (2) | −0.002 (2) |
| C5 | 0.035 (2) | 0.048 (3) | 0.050 (2) | −0.0030 (18) | 0.0056 (17) | 0.001 (2) |
| C6 | 0.040 (2) | 0.047 (2) | 0.046 (2) | −0.0016 (18) | 0.0121 (17) | 0.0012 (18) |
| C7 | 0.051 (2) | 0.053 (3) | 0.042 (2) | −0.006 (2) | 0.0060 (18) | −0.0026 (19) |
| C8 | 0.062 (3) | 0.052 (3) | 0.053 (2) | −0.008 (2) | 0.021 (2) | 0.004 (2) |
| C9 | 0.046 (2) | 0.042 (2) | 0.047 (2) | −0.0039 (18) | 0.0067 (17) | 0.0017 (19) |
| C10 | 0.073 (3) | 0.061 (3) | 0.042 (2) | −0.018 (2) | 0.011 (2) | −0.001 (2) |
| C11 | 0.073 (3) | 0.060 (3) | 0.046 (2) | −0.023 (2) | 0.017 (2) | 0.008 (2) |
| C12 | 0.101 (4) | 0.097 (4) | 0.059 (3) | 0.013 (3) | 0.016 (3) | −0.001 (3) |
| C13 | 0.158 (6) | 0.091 (5) | 0.100 (4) | −0.022 (5) | 0.020 (4) | 0.024 (4) |
| N1—C5 | 1.368 (4) | C4—H4 | 0.9300 |
| N1—C1 | 1.418 (5) | C5—C6 | 1.495 (6) |
| N1—H1 | 0.8600 | C6—C7 | 1.379 (6) |
| N2—C1 | 1.338 (5) | C6—C11 | 1.380 (5) |
| N2—C2 | 1.414 (5) | C7—C8 | 1.390 (6) |
| N2—H2 | 0.8600 | C7—H7 | 0.9300 |
| N3—O3 | 1.204 (4) | C8—C9 | 1.358 (5) |
| N3—O2 | 1.209 (4) | C8—H8 | 0.9300 |
| N3—C9 | 1.475 (5) | C9—C10 | 1.356 (6) |
| O1—C5 | 1.225 (5) | C10—C11 | 1.371 (6) |
| O4—S2 | 1.490 (3) | C10—H10 | 0.9300 |
| S1—C1 | 1.638 (4) | C11—H11 | 0.9300 |
| S2—C12 | 1.750 (5) | C12—H12A | 0.9600 |
| S2—C13 | 1.779 (6) | C12—H12B | 0.9600 |
| C2—C3 | 1.372 (5) | C12—H12C | 0.9600 |
| C2—C4i | 1.389 (5) | C13—H13A | 0.9600 |
| C3—C4 | 1.367 (6) | C13—H13B | 0.9600 |
| C3—H3 | 0.9300 | C13—H13C | 0.9600 |
| C4—C2i | 1.389 (5) | ||
| C5—N1—C1 | 127.8 (3) | C11—C6—C5 | 116.4 (3) |
| C5—N1—H1 | 116.1 | C6—C7—C8 | 119.9 (4) |
| C1—N1—H1 | 116.1 | C6—C7—H7 | 120.1 |
| C1—N2—C2 | 130.8 (3) | C8—C7—H7 | 120.1 |
| C1—N2—H2 | 114.6 | C9—C8—C7 | 119.0 (4) |
| C2—N2—H2 | 114.6 | C9—C8—H8 | 120.5 |
| O3—N3—O2 | 123.7 (4) | C7—C8—H8 | 120.5 |
| O3—N3—C9 | 118.1 (3) | C10—C9—C8 | 122.3 (4) |
| O2—N3—C9 | 118.1 (4) | C10—C9—N3 | 118.6 (3) |
| O4—S2—C12 | 106.6 (2) | C8—C9—N3 | 119.2 (4) |
| O4—S2—C13 | 106.1 (2) | C9—C10—C11 | 118.8 (4) |
| C12—S2—C13 | 96.9 (3) | C9—C10—H10 | 120.6 |
| N2—C1—N1 | 113.6 (3) | C11—C10—H10 | 120.6 |
| N2—C1—S1 | 128.4 (3) | C10—C11—C6 | 121.0 (4) |
| N1—C1—S1 | 117.9 (3) | C10—C11—H11 | 119.5 |
| C3—C2—C4i | 118.2 (4) | C6—C11—H11 | 119.5 |
| C3—C2—N2 | 115.9 (4) | S2—C12—H12A | 109.5 |
| C4i—C2—N2 | 125.8 (4) | S2—C12—H12B | 109.5 |
| C4—C3—C2 | 122.1 (4) | H12A—C12—H12B | 109.5 |
| C4—C3—H3 | 118.9 | S2—C12—H12C | 109.5 |
| C2—C3—H3 | 118.9 | H12A—C12—H12C | 109.5 |
| C3—C4—C2i | 119.6 (4) | H12B—C12—H12C | 109.5 |
| C3—C4—H4 | 120.2 | S2—C13—H13A | 109.5 |
| C2i—C4—H4 | 120.2 | S2—C13—H13B | 109.5 |
| O1—C5—N1 | 122.2 (4) | H13A—C13—H13B | 109.5 |
| O1—C5—C6 | 119.4 (3) | S2—C13—H13C | 109.5 |
| N1—C5—C6 | 118.4 (4) | H13A—C13—H13C | 109.5 |
| C7—C6—C11 | 119.1 (4) | H13B—C13—H13C | 109.5 |
| C7—C6—C5 | 124.5 (3) | ||
| C2—N2—C1—N1 | −179.4 (4) | C11—C6—C7—C8 | −0.3 (6) |
| C2—N2—C1—S1 | −2.6 (7) | C5—C6—C7—C8 | −178.1 (4) |
| C5—N1—C1—N2 | 4.2 (6) | C6—C7—C8—C9 | 1.0 (6) |
| C5—N1—C1—S1 | −173.0 (3) | C7—C8—C9—C10 | −0.7 (7) |
| C1—N2—C2—C3 | 170.9 (4) | C7—C8—C9—N3 | 179.6 (4) |
| C1—N2—C2—C4i | −11.5 (7) | O3—N3—C9—C10 | −175.8 (4) |
| C4i—C2—C3—C4 | 0.6 (7) | O2—N3—C9—C10 | 6.8 (6) |
| N2—C2—C3—C4 | 178.4 (4) | O3—N3—C9—C8 | 4.0 (6) |
| C2—C3—C4—C2i | −0.6 (7) | O2—N3—C9—C8 | −173.4 (4) |
| C1—N1—C5—O1 | −5.3 (6) | C8—C9—C10—C11 | −0.3 (7) |
| C1—N1—C5—C6 | 175.5 (4) | N3—C9—C10—C11 | 179.4 (4) |
| O1—C5—C6—C7 | −177.0 (4) | C9—C10—C11—C6 | 1.1 (7) |
| N1—C5—C6—C7 | 2.3 (6) | C7—C6—C11—C10 | −0.7 (7) |
| O1—C5—C6—C11 | 5.2 (6) | C5—C6—C11—C10 | 177.2 (4) |
| N1—C5—C6—C11 | −175.6 (4) |
| H··· | ||||
| N1—H1···O4 | 0.86 | 2.09 | 2.942 (5) | 169 |
| N2—H2···O1 | 0.86 | 1.84 | 2.579 (5) | 143 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O4 | 0.86 | 2.09 | 2.942 (5) | 169 |
| N2—H2⋯O1 | 0.86 | 1.84 | 2.579 (5) | 143 |