Literature DB >> 21582224

3,3'-Dibenzoyl-1,1'-(3,6-dioxaoctane-1,8-di-yl)dithio-urea.

Mouhamadou Moustapha Sow, Ousmane Diouf, Aliou Hamady Barry, Mohamed Gaye, Abdou Salam Sall.   

Abstract

In the mol-ecule of the title compound, C(22)H(26)N(4)O(4)S(2), the central O-CH(2)-CH(2)-O chain adopts a synclinal conformation [torsion angle = 65.0 (2)°]. The crystal structure is stabilized by intra-molecular N-H⋯O=C and inter-molecular N-H⋯O-C hydrogen bonds.

Entities:  

Year:  2009        PMID: 21582224      PMCID: PMC2968616          DOI: 10.1107/S1600536809005662

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Avşar et al. (2003 ▶); Arslan et al. (2004 ▶); Du & Du (2008 ▶); Ding et al. (2008 ▶).

Experimental

Crystal data

C22H26N4O4S2 M = 474.59 Triclinic, a = 7.9718 (2) Å b = 9.2177 (3) Å c = 16.4106 (5) Å α = 81.018 (2)° β = 83.364 (2)° γ = 80.450 (2)° V = 1169.60 (6) Å3 Z = 2 Mo Kα radiation μ = 0.26 mm−1 T = 293 K 0.10 × 0.10 × 0.10 mm

Data collection

Nonius Kappa CCD diffractometer Absorption correction: none 7989 measured reflections 4211 independent reflections 2737 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.128 S = 1.02 4211 reflections 305 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.50 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: DENZO and SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809005662/bh2217sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809005662/bh2217Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H26N4O4S2Z = 2
Mr = 474.59F(000) = 500
Triclinic, P1Dx = 1.347 Mg m3
Hall symbol: -P 1Melting point: 415 K
a = 7.9718 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.2177 (3) ÅCell parameters from 4206 reflections
c = 16.4106 (5) Åθ = 1.0–25.4°
α = 81.018 (2)°µ = 0.26 mm1
β = 83.364 (2)°T = 293 K
γ = 80.450 (2)°Prism, yellow
V = 1169.60 (6) Å30.10 × 0.10 × 0.10 mm
Nonius KappaCCD diffractometer2737 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.030
graphiteθmax = 25.2°, θmin = 2.3°
ω scansh = −9→9
7989 measured reflectionsk = −11→11
4211 independent reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.128H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0614P)2 + 0.2609P] where P = (Fo2 + 2Fc2)/3
4211 reflections(Δ/σ)max = 0.008
305 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.50 e Å3
0 constraints
xyzUiso*/Ueq
S10.37094 (10)0.16706 (9)0.86251 (5)0.0713 (3)
S21.26452 (13)−0.27342 (8)0.52516 (4)0.0790 (3)
O10.7377 (3)0.4586 (2)0.91685 (11)0.0711 (6)
O20.81088 (19)0.39803 (17)0.67050 (9)0.0482 (4)
O31.12041 (19)0.24744 (17)0.60508 (10)0.0472 (4)
O41.2463 (3)0.1608 (2)0.35665 (11)0.0740 (6)
N10.5641 (3)0.2839 (3)0.94678 (14)0.0527 (6)
H10.530 (3)0.224 (3)0.9815 (16)0.049 (8)*
N20.5680 (3)0.3729 (2)0.80784 (13)0.0492 (5)
H20.639 (3)0.422 (3)0.8172 (16)0.056 (8)*
N31.2498 (3)0.0165 (3)0.50822 (13)0.0506 (5)
H31.236 (3)0.099 (3)0.4798 (17)0.063 (9)*
N41.2073 (3)−0.0786 (2)0.39123 (12)0.0465 (5)
H41.190 (3)−0.154 (3)0.3741 (15)0.052 (8)*
C10.7116 (3)0.3433 (3)1.05616 (14)0.0456 (6)
C20.8101 (3)0.4370 (3)1.08034 (16)0.0539 (6)
H2A0.84970.51151.04160.065*
C30.8498 (4)0.4211 (3)1.16088 (18)0.0639 (7)
H3A0.91690.48401.17630.077*
C40.7902 (4)0.3120 (3)1.21864 (18)0.0692 (8)
H4A0.81650.30121.27320.083*
C50.6923 (4)0.2194 (4)1.19573 (19)0.0771 (9)
H50.65130.14641.23500.093*
C60.6537 (4)0.2335 (3)1.11472 (17)0.0649 (8)
H60.58850.16901.09950.078*
C70.6744 (3)0.3674 (3)0.96796 (15)0.0488 (6)
C80.5078 (3)0.2817 (3)0.86956 (15)0.0477 (6)
C90.5275 (3)0.3838 (3)0.72324 (15)0.0537 (6)
H9A0.40950.42930.71890.064*
H9B0.54060.28510.70750.064*
C100.6419 (3)0.4745 (3)0.66582 (15)0.0516 (6)
H10A0.61010.48590.60960.062*
H10B0.63310.57230.68220.062*
C110.9346 (3)0.4733 (3)0.61860 (16)0.0522 (6)
H11A0.92780.57300.63200.063*
H11B0.91330.48040.56100.063*
C121.1067 (3)0.3882 (3)0.63208 (16)0.0506 (6)
H12A1.19360.44260.60140.061*
H12B1.12430.37510.69040.061*
C131.2832 (3)0.1611 (3)0.61572 (16)0.0529 (6)
H13A1.30920.15380.67270.063*
H13B1.37050.20770.57990.063*
C141.2803 (3)0.0091 (3)0.59436 (14)0.0504 (6)
H14A1.3887−0.05290.60450.061*
H14B1.1912−0.03590.62970.061*
C151.2389 (3)−0.1016 (3)0.47501 (14)0.0447 (6)
C161.2118 (3)0.0483 (3)0.33592 (14)0.0454 (6)
C171.1796 (3)0.0433 (2)0.24907 (14)0.0419 (5)
C181.2227 (3)0.1595 (3)0.19018 (15)0.0527 (6)
H181.26840.23610.20620.063*
C191.1984 (3)0.1624 (3)0.10851 (16)0.0610 (7)
H191.22990.23980.06930.073*
C201.1281 (3)0.0520 (3)0.08436 (16)0.0618 (7)
H201.11200.05460.02890.074*
C211.0811 (3)−0.0632 (3)0.14224 (16)0.0605 (7)
H211.0324−0.13780.12600.073*
C221.1069 (3)−0.0672 (3)0.22467 (15)0.0507 (6)
H221.0751−0.14460.26380.061*
U11U22U33U12U13U23
S10.0807 (5)0.0781 (5)0.0659 (5)−0.0445 (4)−0.0032 (4)−0.0115 (4)
S20.1467 (8)0.0464 (4)0.0494 (4)−0.0296 (5)−0.0275 (5)0.0059 (3)
O10.0906 (14)0.0822 (14)0.0503 (11)−0.0502 (12)−0.0123 (10)0.0050 (10)
O20.0498 (10)0.0443 (9)0.0461 (9)−0.0077 (8)0.0014 (8)0.0036 (7)
O30.0497 (10)0.0457 (9)0.0501 (10)−0.0119 (8)−0.0053 (7)−0.0140 (8)
O40.1328 (18)0.0430 (11)0.0518 (11)−0.0288 (11)−0.0176 (11)−0.0010 (9)
N10.0584 (14)0.0572 (14)0.0453 (13)−0.0237 (11)0.0023 (11)−0.0054 (11)
N20.0468 (12)0.0626 (14)0.0431 (12)−0.0214 (11)0.0000 (10)−0.0112 (10)
N30.0716 (15)0.0397 (13)0.0409 (12)−0.0077 (11)−0.0081 (10)−0.0055 (10)
N40.0666 (14)0.0372 (12)0.0385 (11)−0.0162 (10)−0.0079 (9)−0.0024 (9)
C10.0450 (13)0.0445 (14)0.0455 (14)−0.0027 (11)−0.0034 (11)−0.0053 (11)
C20.0562 (15)0.0556 (16)0.0514 (15)−0.0127 (13)−0.0023 (12)−0.0093 (12)
C30.0698 (18)0.0677 (18)0.0579 (17)−0.0074 (15)−0.0134 (14)−0.0177 (15)
C40.076 (2)0.078 (2)0.0507 (17)0.0048 (17)−0.0169 (15)−0.0081 (16)
C50.087 (2)0.080 (2)0.0591 (19)−0.0181 (18)−0.0171 (16)0.0192 (16)
C60.0748 (19)0.0598 (17)0.0612 (18)−0.0203 (15)−0.0184 (15)0.0077 (14)
C70.0483 (14)0.0492 (15)0.0496 (15)−0.0124 (12)−0.0012 (12)−0.0062 (12)
C80.0461 (13)0.0507 (15)0.0486 (15)−0.0121 (11)0.0023 (11)−0.0135 (12)
C90.0498 (15)0.0667 (17)0.0491 (15)−0.0132 (13)−0.0048 (12)−0.0167 (13)
C100.0562 (15)0.0521 (15)0.0451 (14)−0.0026 (12)−0.0084 (12)−0.0056 (12)
C110.0639 (16)0.0404 (14)0.0514 (15)−0.0188 (12)0.0041 (12)0.0006 (11)
C120.0578 (15)0.0444 (14)0.0527 (15)−0.0208 (12)0.0023 (12)−0.0082 (12)
C130.0527 (15)0.0607 (16)0.0485 (15)−0.0100 (13)−0.0065 (12)−0.0144 (12)
C140.0612 (16)0.0531 (15)0.0379 (13)−0.0040 (12)−0.0102 (11)−0.0100 (11)
C150.0512 (14)0.0442 (14)0.0399 (13)−0.0115 (11)−0.0051 (11)−0.0044 (11)
C160.0543 (14)0.0392 (14)0.0426 (13)−0.0097 (11)−0.0041 (11)−0.0023 (11)
C170.0440 (13)0.0396 (13)0.0399 (13)−0.0052 (10)−0.0027 (10)−0.0009 (10)
C180.0591 (16)0.0488 (15)0.0492 (15)−0.0153 (12)−0.0033 (12)0.0029 (12)
C190.0667 (18)0.0656 (18)0.0458 (16)−0.0163 (15)−0.0043 (13)0.0132 (13)
C200.0631 (17)0.080 (2)0.0399 (14)−0.0112 (15)−0.0098 (13)0.0033 (14)
C210.0691 (17)0.0629 (17)0.0527 (16)−0.0161 (14)−0.0134 (13)−0.0059 (13)
C220.0572 (15)0.0500 (15)0.0434 (14)−0.0135 (12)−0.0065 (12)0.0052 (11)
S1—C81.665 (3)C5—H50.9300
S2—C151.659 (2)C6—H60.9300
O1—C71.220 (3)C9—C101.492 (3)
O2—C101.417 (3)C9—H9A0.9700
O2—C111.424 (3)C9—H9B0.9700
O3—C121.419 (3)C10—H10A0.9700
O3—C131.419 (3)C10—H10B0.9700
O4—C161.222 (3)C11—C121.485 (3)
N1—C71.366 (3)C11—H11A0.9700
N1—C81.396 (3)C11—H11B0.9700
N1—H10.79 (3)C12—H12A0.9700
N2—C81.311 (3)C12—H12B0.9700
N2—C91.446 (3)C13—C141.501 (3)
N2—H20.82 (3)C13—H13A0.9700
N3—C151.310 (3)C13—H13B0.9700
N3—C141.451 (3)C14—H14A0.9700
N3—H30.83 (3)C14—H14B0.9700
N4—C161.367 (3)C16—C171.486 (3)
N4—C151.404 (3)C17—C221.382 (3)
N4—H40.82 (3)C17—C181.386 (3)
C1—C61.382 (3)C18—C191.372 (4)
C1—C21.387 (3)C18—H180.9300
C1—C71.486 (3)C19—C201.369 (4)
C2—C31.375 (4)C19—H190.9300
C2—H2A0.9300C20—C211.380 (4)
C3—C41.376 (4)C20—H200.9300
C3—H3A0.9300C21—C221.386 (4)
C4—C51.366 (4)C21—H210.9300
C4—H4A0.9300C22—H220.9300
C5—C61.381 (4)
C10—O2—C11113.12 (18)H10A—C10—H10B108.5
C12—O3—C13112.15 (18)O2—C11—C12108.43 (19)
C7—N1—C8129.4 (2)O2—C11—H11A110.0
C7—N1—H1117.6 (19)C12—C11—H11A110.0
C8—N1—H1112.9 (19)O2—C11—H11B110.0
C8—N2—C9124.1 (2)C12—C11—H11B110.0
C8—N2—H2117.9 (18)H11A—C11—H11B108.4
C9—N2—H2117.9 (19)O3—C12—C11109.5 (2)
C15—N3—C14122.6 (2)O3—C12—H12A109.8
C15—N3—H3119 (2)C11—C12—H12A109.8
C14—N3—H3118 (2)O3—C12—H12B109.8
C16—N4—C15127.9 (2)C11—C12—H12B109.8
C16—N4—H4118.1 (18)H12A—C12—H12B108.2
C15—N4—H4113.8 (18)O3—C13—C14108.6 (2)
C6—C1—C2118.7 (2)O3—C13—H13A110.0
C6—C1—C7123.7 (2)C14—C13—H13A110.0
C2—C1—C7117.6 (2)O3—C13—H13B110.0
C3—C2—C1120.8 (3)C14—C13—H13B110.0
C3—C2—H2A119.6H13A—C13—H13B108.4
C1—C2—H2A119.6N3—C14—C13111.0 (2)
C2—C3—C4119.8 (3)N3—C14—H14A109.4
C2—C3—H3A120.1C13—C14—H14A109.4
C4—C3—H3A120.1N3—C14—H14B109.4
C5—C4—C3119.9 (3)C13—C14—H14B109.4
C5—C4—H4A120.0H14A—C14—H14B108.0
C3—C4—H4A120.0N3—C15—N4116.7 (2)
C4—C5—C6120.5 (3)N3—C15—S2124.06 (19)
C4—C5—H5119.7N4—C15—S2119.18 (18)
C6—C5—H5119.7O4—C16—N4121.1 (2)
C5—C6—C1120.2 (3)O4—C16—C17121.1 (2)
C5—C6—H6119.9N4—C16—C17117.8 (2)
C1—C6—H6119.9C22—C17—C18119.0 (2)
O1—C7—N1121.3 (2)C22—C17—C16124.1 (2)
O1—C7—C1121.7 (2)C18—C17—C16116.9 (2)
N1—C7—C1117.0 (2)C19—C18—C17120.5 (3)
N2—C8—N1116.1 (2)C19—C18—H18119.8
N2—C8—S1125.2 (2)C17—C18—H18119.8
N1—C8—S1118.66 (18)C20—C19—C18120.4 (2)
N2—C9—C10110.6 (2)C20—C19—H19119.8
N2—C9—H9A109.5C18—C19—H19119.8
C10—C9—H9A109.5C19—C20—C21120.1 (3)
N2—C9—H9B109.5C19—C20—H20120.0
C10—C9—H9B109.5C21—C20—H20120.0
H9A—C9—H9B108.1C20—C21—C22119.7 (3)
O2—C10—C9107.14 (19)C20—C21—H21120.1
O2—C10—H10A110.3C22—C21—H21120.1
C9—C10—H10A110.3C17—C22—C21120.3 (2)
O2—C10—H10B110.3C17—C22—H22119.8
C9—C10—H10B110.3C21—C22—H22119.8
O2—C11—C12—O365.0 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2···O10.82 (3)1.99 (3)2.648 (3)136 (2)
N3—H3···O40.83 (3)2.01 (3)2.632 (3)132 (3)
N4—H4···O2i0.82 (3)2.48 (3)3.290 (3)170 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O10.82 (3)1.99 (3)2.648 (3)136 (2)
N3—H3⋯O40.83 (3)2.01 (3)2.632 (3)132 (3)
N4—H4⋯O2i0.82 (3)2.48 (3)3.290 (3)170 (2)

Symmetry code: (i) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3,3'-Bis(3,4,5-trimethoxy-benzo-yl)-1,1'-(o-phenyl-ene)dithio-urea ethanol solvate.

Authors:  Hai-Tang Du; Hai-Jun Du
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-07-31

3.  3,3'-Dibenzoyl-1,1'-(butane-1,4-diyl)-dithio-urea.

Authors:  Yu-Jie Ding; Xi-Bin Chang; Xiao-Qing Yang; Wen-Kui Dong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-05

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  3,3'-Dibenzoyl-1,1'-dibenzyl-1,1'-(ethane-1,2-di-yl)-dithio-urea.

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  1 in total

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