Literature DB >> 22354431

Darwinian evolution of an alternative genetic system provides support for TNA as an RNA progenitor.

Hanyang Yu1, Su Zhang, John C Chaput.   

Abstract

The pre-RNA world hypothesis postulates that RNA was preceded in the evolution of life by a simpler genetic material, but it is not known if such systems can fold into structures capable of eliciting a desired function. Presumably, whatever chemistry gave rise to RNA would have produced other RNA analogues, some of which may have preceded or competed directly with RNA. Threose nucleic acid (TNA), a potentially natural derivative of RNA, has received considerable interest as a possible RNA progenitor due to its chemical simplicity and ability to exchange genetic information with itself and RNA. Here, we have applied Darwinian evolution methods to evolve, in vitro, a TNA receptor that binds to an arbitrary target with high affinity and specificity. This demonstration shows that TNA has the ability to fold into tertiary structures with sophisticated chemical functions, which provides evidence that TNA could have served as an ancestral genetic system during an early stage of life.

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Year:  2012        PMID: 22354431     DOI: 10.1038/nchem.1241

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  34 in total

1.  Chemical etiology of nucleic acid structure: the alpha-threofuranosyl-(3'-->2') oligonucleotide system.

Authors:  K Schöning; P Scholz; S Guntha; X Wu; R Krishnamurthy; A Eschenmoser
Journal:  Science       Date:  2000-11-17       Impact factor: 47.728

Review 2.  The antiquity of RNA-based evolution.

Authors:  Gerald F Joyce
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

Review 3.  Getting past the RNA world: the initial Darwinian ancestor.

Authors:  Michael Yarus
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-04-01       Impact factor: 10.005

Review 4.  Forty years of in vitro evolution.

Authors:  Gerald F Joyce
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

5.  Selection of single-stranded DNA molecules that bind and inhibit human thrombin.

Authors:  L C Bock; L C Griffin; J A Latham; E H Vermaas; J J Toole
Journal:  Nature       Date:  1992-02-06       Impact factor: 49.962

6.  Polymerase engineering: towards the encoded synthesis of unnatural biopolymers.

Authors:  David Loakes; Philipp Holliger
Journal:  Chem Commun (Camb)       Date:  2009-07-06       Impact factor: 6.222

7.  The RNA worlds in context.

Authors:  Thomas R Cech
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-07-01       Impact factor: 10.005

8.  The case for an ancestral genetic system involving simple analogues of the nucleotides.

Authors:  G F Joyce; A W Schwartz; S L Miller; L E Orgel
Journal:  Proc Natl Acad Sci U S A       Date:  1987-07       Impact factor: 11.205

9.  Origin of life. A simpler nucleic acid.

Authors:  L Orgel
Journal:  Science       Date:  2000-11-17       Impact factor: 47.728

10.  TNA synthesis by DNA polymerases.

Authors:  John C Chaput; Jack W Szostak
Journal:  J Am Chem Soc       Date:  2003-08-06       Impact factor: 15.419

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  60 in total

1.  Highly stable hexitol based XNA aptamers targeting the vascular endothelial growth factor.

Authors:  Elena Eremeeva; Antonios Fikatas; Lia Margamuljana; Mikhail Abramov; Dominique Schols; Elisabetta Groaz; Piet Herdewijn
Journal:  Nucleic Acids Res       Date:  2019-06-04       Impact factor: 16.971

2.  Enzymatic Synthesis of Sequence-Defined Synthetic Nucleic Acid Polymers with Diverse Functional Groups.

Authors:  Dehui Kong; Yi Lei; Wayland Yeung; Ryan Hili
Journal:  Angew Chem Int Ed Engl       Date:  2016-10-10       Impact factor: 15.336

Review 3.  The RNA World: molecular cooperation at the origins of life.

Authors:  Paul G Higgs; Niles Lehman
Journal:  Nat Rev Genet       Date:  2014-11-11       Impact factor: 53.242

Review 4.  Beyond DNA and RNA: The Expanding Toolbox of Synthetic Genetics.

Authors:  Alexander I Taylor; Gillian Houlihan; Philipp Holliger
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-06-03       Impact factor: 10.005

5.  RNA-Catalyzed Polymerization of Deoxyribose, Threose, and Arabinose Nucleic Acids.

Authors:  David P Horning; Saikat Bala; John C Chaput; Gerald F Joyce
Journal:  ACS Synth Biol       Date:  2019-05-03       Impact factor: 5.110

6.  Evolution of abiotic cubane chemistries in a nucleic acid aptamer allows selective recognition of a malaria biomarker.

Authors:  Yee-Wai Cheung; Pascal Röthlisberger; Ariel E Mechaly; Patrick Weber; Fabienne Levi-Acobas; Young Lo; Alvin W C Wong; Andrew B Kinghorn; Ahmed Haouz; G Paul Savage; Marcel Hollenstein; Julian A Tanner
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-06       Impact factor: 11.205

7.  The expanding view of RNA and DNA function.

Authors:  Ronald R Breaker; Gerald F Joyce
Journal:  Chem Biol       Date:  2014-09-18

8.  Reactivity and survivability of glycolaldehyde in simulated meteorite impact experiments.

Authors:  V P McCaffrey; N E B Zellner; C M Waun; E R Bennett; E K Earl
Journal:  Orig Life Evol Biosph       Date:  2014-06-17       Impact factor: 1.950

Review 9.  The expanding world of DNA and RNA.

Authors:  Tingjian Chen; Narupat Hongdilokkul; Zhixia Liu; Deepak Thirunavukarasu; Floyd E Romesberg
Journal:  Curr Opin Chem Biol       Date:  2016-08-24       Impact factor: 8.822

Review 10.  Reflections of a Darwinian Engineer.

Authors:  Gerald F Joyce
Journal:  J Mol Evol       Date:  2015-11-23       Impact factor: 2.395

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