Literature DB >> 25237854

The expanding view of RNA and DNA function.

Ronald R Breaker1, Gerald F Joyce2.   

Abstract

RNA and DNA are simple linear polymers consisting of only four major types of subunits, and yet these molecules carry out a remarkable diversity of functions in cells and in the laboratory. Each newly discovered function of natural or engineered nucleic acids enforces the view that prior assessments of nucleic acid function were far too narrow and that many more exciting findings are yet to come. This Perspective highlights just a few of the numerous discoveries over the past 20 years pertaining to nucleic acid function, focusing on those that have been of particular interest to chemical biologists. History suggests that there will continue to be many opportunities to engage chemical biologists in the discovery, creation, and manipulation of nucleic acid function in the years to come.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25237854      PMCID: PMC4171699          DOI: 10.1016/j.chembiol.2014.07.008

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  74 in total

1.  Nucleic Acid Selection and the Challenge of Combinatorial Chemistry.

Authors:  Scott E. Osborne; Andrew D. Ellington
Journal:  Chem Rev       Date:  1997-04-01       Impact factor: 60.622

Review 2.  Bacterial RNA thermometers: molecular zippers and switches.

Authors:  Jens Kortmann; Franz Narberhaus
Journal:  Nat Rev Microbiol       Date:  2012-03-16       Impact factor: 60.633

3.  Unusual resistance of peptidyl transferase to protein extraction procedures.

Authors:  H F Noller; V Hoffarth; L Zimniak
Journal:  Science       Date:  1992-06-05       Impact factor: 47.728

4.  Ribozyme-catalyzed transcription of an active ribozyme.

Authors:  Aniela Wochner; James Attwater; Alan Coulson; Philipp Holliger
Journal:  Science       Date:  2011-04-08       Impact factor: 47.728

Review 5.  lincRNAs: genomics, evolution, and mechanisms.

Authors:  Igor Ulitsky; David P Bartel
Journal:  Cell       Date:  2013-07-03       Impact factor: 41.582

6.  A DNA enzyme with Mg(2+)-dependent RNA phosphoesterase activity.

Authors:  R R Breaker; G F Joyce
Journal:  Chem Biol       Date:  1995-10

7.  RNA-catalysed carbon-carbon bond formation.

Authors:  T M Tarasow; S L Tarasow; B E Eaton
Journal:  Nature       Date:  1997-09-04       Impact factor: 49.962

8.  A DNA metalloenzyme with DNA ligase activity.

Authors:  B Cuenoud; J W Szostak
Journal:  Nature       Date:  1995-06-15       Impact factor: 49.962

9.  Validating fragment-based drug discovery for biological RNAs: lead fragments bind and remodel the TPP riboswitch specifically.

Authors:  Katherine Deigan Warner; Philip Homan; Kevin M Weeks; Alison G Smith; Chris Abell; Adrian R Ferré-D'Amaré
Journal:  Chem Biol       Date:  2014-04-24

10.  DNA-catalyzed sequence-specific hydrolysis of DNA.

Authors:  Madhavaiah Chandra; Amit Sachdeva; Scott K Silverman
Journal:  Nat Chem Biol       Date:  2009-08-16       Impact factor: 15.040

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  30 in total

1.  Pursuing DNA catalysts for protein modification.

Authors:  Scott K Silverman
Journal:  Acc Chem Res       Date:  2015-05-05       Impact factor: 22.384

2.  Kinetically guided radical-based synthesis of C(sp3)-C(sp3) linkages on DNA.

Authors:  Jie Wang; Helena Lundberg; Shota Asai; Pedro Martín-Acosta; Jason S Chen; Stephen Brown; William Farrell; Russell G Dushin; Christopher J O'Donnell; Anokha S Ratnayake; Paul Richardson; Zhiqing Liu; Tian Qin; Donna G Blackmond; Phil S Baran
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-26       Impact factor: 11.205

3.  Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments.

Authors:  Giovanni Pinamonti; Sandro Bottaro; Cristian Micheletti; Giovanni Bussi
Journal:  Nucleic Acids Res       Date:  2015-07-17       Impact factor: 16.971

Review 4.  Therapeutic nucleic acids: current clinical status.

Authors:  Kannan Sridharan; Nithya Jaideep Gogtay
Journal:  Br J Clin Pharmacol       Date:  2016-06-03       Impact factor: 4.335

Review 5.  Designing optogenetically controlled RNA for regulating biological systems.

Authors:  Mingxu You; Samie R Jaffrey
Journal:  Ann N Y Acad Sci       Date:  2015-03-10       Impact factor: 5.691

6.  DNAzyme-Mediated Genetically Encoded Sensors for Ratiometric Imaging of Metal Ions in Living Cells.

Authors:  Mengyi Xiong; Zhenglin Yang; Ryan J Lake; Junjie Li; Shanni Hong; Huanhuan Fan; Xiao-Bing Zhang; Yi Lu
Journal:  Angew Chem Int Ed Engl       Date:  2019-12-18       Impact factor: 15.336

7.  Measuring RNA-Ligand Interactions with Microscale Thermophoresis.

Authors:  Michelle H Moon; Thomas A Hilimire; Allix M Sanders; John S Schneekloth
Journal:  Biochemistry       Date:  2018-01-31       Impact factor: 3.162

8.  An Ontology for Facilitating Discussion of Catalytic Strategies of RNA-Cleaving Enzymes.

Authors:  Philip C Bevilacqua; Michael E Harris; Joseph A Piccirilli; Colin Gaines; Abir Ganguly; Ken Kostenbader; Şölen Ekesan; Darrin M York
Journal:  ACS Chem Biol       Date:  2019-06-07       Impact factor: 5.100

Review 9.  Fluorescent indicator displacement assays to identify and characterize small molecule interactions with RNA.

Authors:  Sarah L Wicks; Amanda E Hargrove
Journal:  Methods       Date:  2019-04-30       Impact factor: 3.608

10.  Discovery of Inhibitors of MicroRNA-21 Processing Using Small Molecule Microarrays.

Authors:  Colleen M Connelly; Robert E Boer; Michelle H Moon; Peter Gareiss; John S Schneekloth
Journal:  ACS Chem Biol       Date:  2016-12-23       Impact factor: 5.100

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