Literature DB >> 19641798

Polymerase engineering: towards the encoded synthesis of unnatural biopolymers.

David Loakes1, Philipp Holliger.   

Abstract

DNA is not only a repository of genetic information for life, it is also a unique polymer with remarkable properties: it associates according to well-defined rules, it can be assembled into diverse nanostructures of defined geometry, it can be evolved to bind ligands and catalyse chemical reactions and it can serve as a supramolecular scaffold to arrange chemical groups in space. However, its chemical makeup is rather uniform and the physicochemical properties of the four canonical bases only span a narrow range. Much wider chemical diversity is accessible through solid-phase synthesis but oligomers are limited to <100 nucleotides and variations in chemistry can usually not be replicated and thus are not amenable to evolution. Recent advances in nucleic acid chemistry and polymerase engineering promise to bring the synthesis, replication and ultimately evolution of nucleic acid polymers with greatly expanded chemical diversity within our reach.

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Year:  2009        PMID: 19641798     DOI: 10.1039/b903307f

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  22 in total

1.  Darwinian evolution of an alternative genetic system provides support for TNA as an RNA progenitor.

Authors:  Hanyang Yu; Su Zhang; John C Chaput
Journal:  Nat Chem       Date:  2012-01-10       Impact factor: 24.427

Review 2.  The Toolbox for Modified Aptamers.

Authors:  Sergey A Lapa; Alexander V Chudinov; Edward N Timofeev
Journal:  Mol Biotechnol       Date:  2016-02       Impact factor: 2.695

Review 3.  Non-natural nucleic acids for synthetic biology.

Authors:  Daniel H Appella
Journal:  Curr Opin Chem Biol       Date:  2009-10-29       Impact factor: 8.822

Review 4.  Aptamers as Therapeutic Agents: Has the Initial Euphoria Subsided?

Authors:  S K Haßel; G Mayer
Journal:  Mol Diagn Ther       Date:  2019-06       Impact factor: 4.074

5.  Tautomeric Equilibria of Nucleobases in the Hachimoji Expanded Genetic Alphabet.

Authors:  Lukas Eberlein; Frank R Beierlein; Nico J R van Eikema Hommes; Ashish Radadiya; Jochen Heil; Steven A Benner; Timothy Clark; Stefan M Kast; Nigel G J Richards
Journal:  J Chem Theory Comput       Date:  2020-03-20       Impact factor: 6.006

6.  Substitution of Ala for Tyr567 in RB69 DNA polymerase allows dAMP and dGMP to be inserted opposite Guanidinohydantoin .

Authors:  Jeff Beckman; Mina Wang; Gregor Blaha; Jimin Wang; William H Konigsberg
Journal:  Biochemistry       Date:  2010-09-09       Impact factor: 3.162

Review 7.  Biology by design: from top to bottom and back.

Authors:  Brian R Fritz; Laura E Timmerman; Nichole M Daringer; Joshua N Leonard; Michael C Jewett
Journal:  J Biomed Biotechnol       Date:  2010-11-02

8.  CyDNA: synthesis and replication of highly Cy-dye substituted DNA by an evolved polymerase.

Authors:  Nicola Ramsay; Ann-Sofie Jemth; Anthony Brown; Neal Crampton; Paul Dear; Philipp Holliger
Journal:  J Am Chem Soc       Date:  2010-04-14       Impact factor: 15.419

9.  DNA ligase-mediated translation of DNA into densely functionalized nucleic acid polymers.

Authors:  Ryan Hili; Jia Niu; David R Liu
Journal:  J Am Chem Soc       Date:  2012-12-26       Impact factor: 15.419

Review 10.  Synthetic constructs in/for the environment: managing the interplay between natural and engineered Biology.

Authors:  Markus Schmidt; Víctor de Lorenzo
Journal:  FEBS Lett       Date:  2012-02-23       Impact factor: 4.124

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