Literature DB >> 21441585

The RNA worlds in context.

Thomas R Cech1.   

Abstract

There are two RNA worlds. The first is the primordial RNA world, a hypothetical era when RNA served as both information and function, both genotype and phenotype. The second RNA world is that of today's biological systems, where RNA plays active roles in catalyzing biochemical reactions, in translating mRNA into proteins, in regulating gene expression, and in the constant battle between infectious agents trying to subvert host defense systems and host cells protecting themselves from infection. This second RNA world is not at all hypothetical, and although we do not have all the answers about how it works, we have the tools to continue our interrogation of this world and refine our understanding. The fun comes when we try to use our secure knowledge of the modern RNA world to infer what the primordial RNA world might have looked like.

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Year:  2012        PMID: 21441585      PMCID: PMC3385955          DOI: 10.1101/cshperspect.a006742

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  40 in total

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Authors:  Jeannie T Lee
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-03-31       Impact factor: 10.005

Review 2.  The origins of the RNA world.

Authors:  Michael P Robertson; Gerald F Joyce
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-05-01       Impact factor: 10.005

Review 3.  In vivo RNAi: today and tomorrow.

Authors:  Norbert Perrimon; Jian-Quan Ni; Lizabeth Perkins
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-06-09       Impact factor: 10.005

Review 4.  The roles of RNA in the synthesis of protein.

Authors:  Peter B Moore; Thomas A Steitz
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-11-01       Impact factor: 10.005

Review 5.  Bacterial small RNA regulators: versatile roles and rapidly evolving variations.

Authors:  Susan Gottesman; Gisela Storz
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-12-01       Impact factor: 10.005

Review 6.  Setting the stage: the history, chemistry, and geobiology behind RNA.

Authors:  Steven A Benner; Hyo-Joong Kim; Zunyi Yang
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-01-01       Impact factor: 10.005

7.  Protein-free small nuclear RNAs catalyze a two-step splicing reaction.

Authors:  Saba Valadkhan; Afshin Mohammadi; Yasaman Jaladat; Sarah Geisler
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-22       Impact factor: 11.205

Review 8.  The ribosome: some hard facts about its structure and hot air about its evolution.

Authors:  V Ramakrishnan
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2009-12-02

Review 9.  Spliceosome structure and function.

Authors:  Cindy L Will; Reinhard Lührmann
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-07-01       Impact factor: 10.005

10.  Crystal structure of the catalytic core of an RNA-polymerase ribozyme.

Authors:  David M Shechner; Robert A Grant; Sarah C Bagby; Yelena Koldobskaya; Joseph A Piccirilli; David P Bartel
Journal:  Science       Date:  2009-11-27       Impact factor: 47.728

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  50 in total

1.  Darwinian evolution of an alternative genetic system provides support for TNA as an RNA progenitor.

Authors:  Hanyang Yu; Su Zhang; John C Chaput
Journal:  Nat Chem       Date:  2012-01-10       Impact factor: 24.427

2.  The minimotif synthesis hypothesis for the origin of life.

Authors:  Martin R Schiller
Journal:  J Transl Sci       Date:  2016-07-19

3.  Evolution of the protein stoichiometry in the L12 stalk of bacterial and organellar ribosomes.

Authors:  Iakov I Davydov; Ingo Wohlgemuth; Irena I Artamonova; Henning Urlaub; Alexander G Tonevitsky; Marina V Rodnina
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

4.  Evolutionary relationship of two ancient protein superfolds.

Authors:  José Arcadio Farías-Rico; Steffen Schmidt; Birte Höcker
Journal:  Nat Chem Biol       Date:  2014-07-13       Impact factor: 15.040

5.  Genes without prominence: a reappraisal of the foundations of biology.

Authors:  Arto Annila; Keith Baverstock
Journal:  J R Soc Interface       Date:  2014-02-19       Impact factor: 4.118

Review 6.  Ribonucleotides in DNA: origins, repair and consequences.

Authors:  Jessica S Williams; Thomas A Kunkel
Journal:  DNA Repair (Amst)       Date:  2014-04-30

Review 7.  Regulation of transcription by long noncoding RNAs.

Authors:  Roberto Bonasio; Ramin Shiekhattar
Journal:  Annu Rev Genet       Date:  2014-09-18       Impact factor: 16.830

8.  A Proposal of the Ur-proteome.

Authors:  Miryam Palacios-Pérez; Fernando Andrade-Díaz; Marco V José
Journal:  Orig Life Evol Biosph       Date:  2017-11-10       Impact factor: 1.950

9.  Terahertz: dictating the frequency of life. Do macromolecular vibrational modes impose thermal limitations on terrestrial life?

Authors:  Kieran Hand; Edwin Yates
Journal:  J R Soc Interface       Date:  2017-11       Impact factor: 4.118

Review 10.  The persistent contributions of RNA to eukaryotic gen(om)e architecture and cellular function.

Authors:  Jürgen Brosius
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-07-31       Impact factor: 10.005

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