Literature DB >> 27633832

Enzymatic Synthesis of Sequence-Defined Synthetic Nucleic Acid Polymers with Diverse Functional Groups.

Dehui Kong1, Yi Lei1, Wayland Yeung1, Ryan Hili2.   

Abstract

The development and in-depth analysis of T4 DNA ligase-catalyzed DNA templated oligonucleotide polymerization toward the generation of diversely functionalized nucleic acid polymers is described. The NNNNT codon set enables low codon bias, high fidelity, and high efficiency for the polymerization of ANNNN libraries comprising various functional groups. The robustness of the method was highlighted in the copolymerization of a 256-membered ANNNN library comprising 16 sub-libraries modified with different functional groups. This enabled the generation of diversely functionalized synthetic nucleic acid polymer libraries with 93.8 % fidelity. This process should find ready application in DNA nanotechnology, DNA computing, and in vitro evolution of functional nucleic acid polymers.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  ligase; modified DNA; molecular evolution; nucleic acids; sequencing

Mesh:

Substances:

Year:  2016        PMID: 27633832      PMCID: PMC5330676          DOI: 10.1002/anie.201607538

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  26 in total

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Journal:  Eur J Biochem       Date:  2003-11

Review 5.  Sequence control in polymer synthesis.

Authors:  Nezha Badi; Jean-François Lutz
Journal:  Chem Soc Rev       Date:  2009-07-23       Impact factor: 54.564

6.  A versatile toolbox for variable DNA functionalization at high density.

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7.  Investigation of the catalytic mechanism of a synthetic DNAzyme with protein-like functionality: an RNaseA mimic?

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Journal:  J Am Chem Soc       Date:  2009-04-22       Impact factor: 15.419

8.  Bridging the gap between proteins and nucleic acids: a metal-independent RNAseA mimic with two protein-like functionalities.

Authors:  D M Perrin; T Garestier; C Hélène
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9.  Crawling out of the RNA world.

Authors:  Thomas R Cech
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10.  A self-cleaving DNA enzyme modified with amines, guanidines and imidazoles operates independently of divalent metal cations (M2+).

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  8 in total

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2.  Efficiency and fidelity of T3 DNA ligase in ligase-catalysed oligonucleotide polymerisations.

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4.  Modified Nucleotides as Substrates of Terminal Deoxynucleotidyl Transferase.

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5.  Side chain determinants of biopolymer function during selection and replication.

Authors:  Phillip A Lichtor; Zhen Chen; Nadine H Elowe; Jonathan C Chen; David R Liu
Journal:  Nat Chem Biol       Date:  2019-02-11       Impact factor: 15.040

Review 6.  Modified Nucleic Acids: Expanding the Capabilities of Functional Oligonucleotides.

Authors:  Steven Ochoa; Valeria T Milam
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7.  Mutant polymerases capable of 2' fluoro-modified nucleic acid synthesis and amplification with improved accuracy.

Authors:  Trevor A Christensen; Kristi Y Lee; Simone Z P Gottlieb; Mikayla B Carrier; Aaron M Leconte
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Review 8.  Modified nucleic acids: replication, evolution, and next-generation therapeutics.

Authors:  Karen Duffy; Sebastian Arangundy-Franklin; Philipp Holliger
Journal:  BMC Biol       Date:  2020-09-02       Impact factor: 7.431

  8 in total

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