| Literature DB >> 22346971 |
Abstract
The asymmetric unit of the title compound, C(8)H(6)F(3)N(2) (+)·0.5C(10)H(6)O(6)S(2) (2-), consists of one 2-trifluoro-methyl-1H-benz-imidazol-3-ium cation and a half naphthalene-1,5-disulfate anion, which are linked by an N-H⋯O hydrogen bond. The anion sits across a centre of symmetry. The atoms of the benzimidazole ring are nearly coplanar (r.m.s. deviation of the fitted atoms = 0.0085 Å) and the triflouromethyl group lies out of this plane. In the crystal, the cations are linked to adjacent anions by N-H⋯O hydrogen bonds, forming a ladder structure parallel to the a axis in which the anions form the rungs. Adjacent ladders are linked by weak C-H⋯O inter-actions, forming sheets parallel to the ac plane.Entities:
Year: 2012 PMID: 22346971 PMCID: PMC3275026 DOI: 10.1107/S1600536812000049
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| 2C8H6F3N2+·C10H6O6S22− | |
| Triclinic, | |
| Hall symbol: -P 1 | |
| Mo | |
| θ = 3.4–26° | |
| µ = 0.29 mm−1 | |
| α = 109.32 (3)° | |
| β = 96.86 (3)° | Block, colourless |
| γ = 119.59 (3)° | 0.36 × 0.32 × 0.28 mm |
| Rigaku Mercury2 diffractometer | 3136 independent reflections |
| Radiation source: fine-focus sealed tube | 2361 reflections with |
| graphite | |
| CCD_Profile_fitting scans | θmax = 27.5°, θmin = 3.2° |
| Absorption correction: multi-scan ( | |
| 7215 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3136 reflections | (Δ/σ)max = 0.011 |
| 227 parameters | Δρmax = 0.23 e Å−3 |
| 36 restraints | Δρmin = −0.42 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| S1 | 1.05784 (8) | 0.72945 (9) | 0.37188 (7) | 0.03242 (19) | |
| O1 | 0.9734 (2) | 0.8147 (3) | 0.3414 (2) | 0.0398 (4) | |
| O2 | 1.2456 (2) | 0.8519 (2) | 0.4164 (2) | 0.0440 (5) | |
| O3 | 1.0035 (3) | 0.6558 (3) | 0.4750 (2) | 0.0532 (5) | |
| C11 | 0.9978 (3) | 0.5476 (3) | 0.1973 (3) | 0.0300 (5) | |
| C12 | 0.9359 (3) | 0.3826 (3) | 0.1952 (3) | 0.0362 (6) | |
| H12 | 0.9236 | 0.3679 | 0.2817 | 0.043* | |
| C13 | 0.8913 (4) | 0.2364 (3) | 0.0616 (3) | 0.0413 (6) | |
| H13 | 0.8468 | 0.1234 | 0.0594 | 0.050* | |
| C14 | 0.9117 (3) | 0.2556 (3) | −0.0659 (3) | 0.0365 (6) | |
| H14 | 0.8816 | 0.1559 | −0.1531 | 0.044* | |
| C110 | 1.0219 (3) | 0.5750 (3) | 0.0670 (3) | 0.0286 (5) | |
| N1 | 0.4697 (3) | 0.7605 (3) | 0.4315 (2) | 0.0360 (5) | |
| H1 | 0.3796 | 0.7607 | 0.4033 | 0.043* | |
| N3 | 0.7062 (3) | 0.7706 (3) | 0.4334 (2) | 0.0339 (5) | |
| H3 | 0.7924 | 0.7781 | 0.4066 | 0.041* | |
| C2 | 0.5853 (3) | 0.7790 (3) | 0.3630 (3) | 0.0352 (6) | |
| C4 | 0.4442 (4) | 0.7162 (4) | 0.6660 (4) | 0.0518 (7) | |
| H4 | 0.3417 | 0.7094 | 0.6641 | 0.062* | |
| C5 | 0.5303 (5) | 0.7028 (5) | 0.7769 (4) | 0.0608 (9) | |
| H5 | 0.4851 | 0.6872 | 0.8528 | 0.073* | |
| C6 | 0.6826 (5) | 0.7115 (5) | 0.7797 (4) | 0.0581 (8) | |
| H6 | 0.7369 | 0.7027 | 0.8579 | 0.070* | |
| C7 | 0.7555 (4) | 0.7326 (4) | 0.6704 (3) | 0.0468 (7) | |
| H7 | 0.8567 | 0.7366 | 0.6718 | 0.056* | |
| C8 | 0.6707 (3) | 0.7477 (3) | 0.5582 (3) | 0.0335 (5) | |
| C9 | 0.5194 (3) | 0.7408 (3) | 0.5562 (3) | 0.0353 (6) | |
| C21 | 0.5768 (4) | 0.8018 (5) | 0.2213 (4) | 0.0523 (7) | |
| F1 | 0.5176 (12) | 0.9023 (10) | 0.2234 (8) | 0.0857 (19) | 0.653 (12) |
| F2 | 0.4588 (17) | 0.6460 (7) | 0.1027 (5) | 0.119 (3) | 0.653 (12) |
| F3 | 0.7210 (9) | 0.8792 (17) | 0.2048 (11) | 0.113 (3) | 0.653 (12) |
| F1A | 0.450 (2) | 0.797 (4) | 0.1674 (19) | 0.114 (5) | 0.347 (12) |
| F2A | 0.590 (3) | 0.6822 (19) | 0.1208 (11) | 0.086 (3) | 0.347 (12) |
| F3A | 0.720 (2) | 0.9515 (16) | 0.2418 (15) | 0.118 (6) | 0.347 (12) |
| S1 | 0.0354 (3) | 0.0412 (4) | 0.0305 (3) | 0.0274 (3) | 0.0148 (3) | 0.0162 (3) |
| O1 | 0.0412 (10) | 0.0540 (11) | 0.0460 (10) | 0.0373 (9) | 0.0240 (8) | 0.0255 (9) |
| O2 | 0.0311 (10) | 0.0428 (11) | 0.0480 (11) | 0.0247 (9) | 0.0066 (8) | 0.0066 (9) |
| O3 | 0.0827 (15) | 0.0612 (13) | 0.0382 (11) | 0.0485 (12) | 0.0333 (11) | 0.0294 (10) |
| C11 | 0.0283 (12) | 0.0354 (13) | 0.0308 (12) | 0.0195 (11) | 0.0136 (10) | 0.0162 (10) |
| C12 | 0.0424 (14) | 0.0436 (15) | 0.0357 (13) | 0.0274 (13) | 0.0205 (11) | 0.0245 (12) |
| C13 | 0.0527 (17) | 0.0303 (13) | 0.0433 (15) | 0.0215 (13) | 0.0205 (13) | 0.0214 (12) |
| C14 | 0.0407 (14) | 0.0325 (13) | 0.0369 (14) | 0.0204 (12) | 0.0153 (11) | 0.0164 (11) |
| C110 | 0.0250 (11) | 0.0332 (13) | 0.0311 (12) | 0.0174 (10) | 0.0121 (9) | 0.0162 (10) |
| N1 | 0.0281 (10) | 0.0427 (12) | 0.0436 (12) | 0.0242 (10) | 0.0138 (9) | 0.0189 (10) |
| N3 | 0.0331 (11) | 0.0426 (12) | 0.0399 (11) | 0.0274 (10) | 0.0193 (9) | 0.0212 (10) |
| C2 | 0.0352 (13) | 0.0353 (14) | 0.0383 (14) | 0.0233 (12) | 0.0143 (11) | 0.0143 (11) |
| C4 | 0.0491 (17) | 0.0541 (18) | 0.0566 (18) | 0.0284 (15) | 0.0328 (15) | 0.0261 (15) |
| C5 | 0.076 (2) | 0.064 (2) | 0.0495 (18) | 0.0369 (19) | 0.0368 (17) | 0.0315 (17) |
| C6 | 0.075 (2) | 0.067 (2) | 0.0467 (17) | 0.0448 (19) | 0.0222 (16) | 0.0333 (16) |
| C7 | 0.0507 (17) | 0.0555 (18) | 0.0481 (16) | 0.0368 (15) | 0.0179 (14) | 0.0270 (14) |
| C8 | 0.0351 (13) | 0.0331 (13) | 0.0366 (13) | 0.0214 (11) | 0.0159 (11) | 0.0154 (11) |
| C9 | 0.0336 (13) | 0.0346 (13) | 0.0404 (14) | 0.0205 (11) | 0.0171 (11) | 0.0164 (11) |
| C21 | 0.059 (2) | 0.069 (2) | 0.0493 (18) | 0.0446 (18) | 0.0237 (16) | 0.0337 (17) |
| F1 | 0.130 (6) | 0.112 (4) | 0.072 (4) | 0.096 (4) | 0.034 (3) | 0.056 (3) |
| F2 | 0.187 (8) | 0.079 (3) | 0.037 (2) | 0.052 (4) | 0.009 (3) | 0.0200 (19) |
| F3 | 0.086 (4) | 0.235 (9) | 0.130 (6) | 0.112 (5) | 0.079 (4) | 0.151 (6) |
| F1A | 0.083 (7) | 0.238 (15) | 0.095 (9) | 0.116 (9) | 0.044 (6) | 0.108 (10) |
| F2A | 0.161 (10) | 0.099 (7) | 0.036 (4) | 0.096 (7) | 0.043 (5) | 0.031 (4) |
| F3A | 0.160 (11) | 0.066 (5) | 0.068 (5) | 0.016 (5) | 0.056 (6) | 0.041 (4) |
| S1—O3 | 1.435 (2) | N3—H3 | 0.8600 |
| S1—O2 | 1.451 (2) | C2—C21 | 1.498 (4) |
| S1—O1 | 1.4547 (18) | C4—C5 | 1.369 (5) |
| S1—C11 | 1.774 (3) | C4—C9 | 1.395 (4) |
| C11—C12 | 1.367 (3) | C4—H4 | 0.9300 |
| C11—C110 | 1.430 (3) | C5—C6 | 1.388 (5) |
| C12—C13 | 1.395 (4) | C5—H5 | 0.9300 |
| C12—H12 | 0.9300 | C6—C7 | 1.373 (4) |
| C13—C14 | 1.366 (3) | C6—H6 | 0.9300 |
| C13—H13 | 0.9300 | C7—C8 | 1.384 (4) |
| C14—C110i | 1.414 (3) | C7—H7 | 0.9300 |
| C14—H14 | 0.9300 | C8—C9 | 1.386 (3) |
| C110—C14i | 1.414 (3) | C21—F1A | 1.223 (11) |
| C110—C110i | 1.419 (5) | C21—F3 | 1.246 (7) |
| N1—C2 | 1.321 (3) | C21—F2A | 1.311 (8) |
| N1—C9 | 1.380 (3) | C21—F2 | 1.314 (6) |
| N1—H1 | 0.8600 | C21—F3A | 1.314 (12) |
| N3—C2 | 1.312 (3) | C21—F1 | 1.317 (6) |
| N3—C8 | 1.384 (3) | ||
| O3—S1—O2 | 113.71 (13) | N1—C2—C21 | 124.3 (2) |
| O3—S1—O1 | 112.87 (11) | C5—C4—C9 | 116.0 (3) |
| O2—S1—O1 | 110.44 (11) | C5—C4—H4 | 122.0 |
| O3—S1—C11 | 107.83 (12) | C9—C4—H4 | 122.0 |
| O2—S1—C11 | 104.13 (11) | C4—C5—C6 | 122.2 (3) |
| O1—S1—C11 | 107.24 (11) | C4—C5—H5 | 118.9 |
| C12—C11—C110 | 121.5 (2) | C6—C5—H5 | 118.9 |
| C12—C11—S1 | 117.00 (18) | C7—C6—C5 | 121.9 (3) |
| C110—C11—S1 | 121.37 (17) | C7—C6—H6 | 119.0 |
| C11—C12—C13 | 119.2 (2) | C5—C6—H6 | 119.0 |
| C11—C12—H12 | 120.4 | C6—C7—C8 | 116.5 (3) |
| C13—C12—H12 | 120.4 | C6—C7—H7 | 121.7 |
| C14—C13—C12 | 121.4 (2) | C8—C7—H7 | 121.7 |
| C14—C13—H13 | 119.3 | N3—C8—C7 | 132.2 (2) |
| C12—C13—H13 | 119.3 | N3—C8—C9 | 106.2 (2) |
| C13—C14—C110i | 120.9 (2) | C7—C8—C9 | 121.5 (2) |
| C13—C14—H14 | 119.6 | N1—C9—C8 | 106.8 (2) |
| C110i—C14—H14 | 119.6 | N1—C9—C4 | 131.4 (3) |
| C14i—C110—C110i | 118.7 (3) | C8—C9—C4 | 121.7 (3) |
| C14i—C110—C11 | 123.1 (2) | F1A—C21—F2A | 110.9 (8) |
| C110i—C110—C11 | 118.3 (3) | F3—C21—F2 | 112.5 (5) |
| C2—N1—C9 | 107.7 (2) | F1A—C21—F3A | 109.7 (11) |
| C2—N1—H1 | 126.2 | F2A—C21—F3A | 99.4 (8) |
| C9—N1—H1 | 126.2 | F3—C21—F1 | 106.2 (5) |
| C2—N3—C8 | 108.1 (2) | F2—C21—F1 | 103.2 (5) |
| C2—N3—H3 | 126.0 | F3—C21—C2 | 113.7 (4) |
| C8—N3—H3 | 126.0 | F2—C21—C2 | 110.7 (3) |
| N3—C2—N1 | 111.2 (2) | F1—C21—C2 | 109.8 (4) |
| N3—C2—C21 | 124.5 (2) | ||
| O3—S1—C11—C12 | −8.3 (2) | C6—C7—C8—N3 | 179.7 (3) |
| O2—S1—C11—C12 | 112.8 (2) | C6—C7—C8—C9 | −0.4 (4) |
| O1—S1—C11—C12 | −130.1 (2) | C2—N1—C9—C8 | −0.2 (3) |
| O3—S1—C11—C110 | 174.97 (18) | C2—N1—C9—C4 | −179.7 (3) |
| O2—S1—C11—C110 | −63.9 (2) | N3—C8—C9—N1 | −0.3 (3) |
| O1—S1—C11—C110 | 53.2 (2) | C7—C8—C9—N1 | 179.8 (2) |
| C110—C11—C12—C13 | −1.5 (4) | N3—C8—C9—C4 | 179.2 (2) |
| S1—C11—C12—C13 | −178.29 (19) | C7—C8—C9—C4 | −0.7 (4) |
| C11—C12—C13—C14 | 1.4 (4) | C5—C4—C9—N1 | −179.5 (3) |
| C12—C13—C14—C110i | −0.4 (4) | C5—C4—C9—C8 | 1.1 (4) |
| C12—C11—C110—C14i | −179.0 (2) | N3—C2—C21—F1A | 176.3 (14) |
| S1—C11—C110—C14i | −2.3 (3) | N1—C2—C21—F1A | −2.1 (15) |
| C12—C11—C110—C110i | 0.6 (4) | N3—C2—C21—F3 | −25.8 (8) |
| S1—C11—C110—C110i | 177.3 (2) | N1—C2—C21—F3 | 155.8 (7) |
| C8—N3—C2—N1 | −0.9 (3) | N3—C2—C21—F2A | 50.4 (10) |
| C8—N3—C2—C21 | −179.5 (2) | N1—C2—C21—F2A | −128.0 (10) |
| C9—N1—C2—N3 | 0.7 (3) | N3—C2—C21—F2 | 101.9 (8) |
| C9—N1—C2—C21 | 179.3 (2) | N1—C2—C21—F2 | −76.5 (8) |
| C9—C4—C5—C6 | −0.5 (5) | N3—C2—C21—F3A | −58.3 (10) |
| C4—C5—C6—C7 | −0.6 (5) | N1—C2—C21—F3A | 123.3 (10) |
| C5—C6—C7—C8 | 1.0 (5) | N3—C2—C21—F1 | −144.7 (5) |
| C2—N3—C8—C7 | −179.3 (3) | N1—C2—C21—F1 | 36.9 (6) |
| C2—N3—C8—C9 | 0.7 (3) |
| H··· | ||||
| N3—H3···O1 | 0.86 | 1.81 | 2.661 (3) | 172 |
| N1—H1···O2ii | 0.86 | 1.84 | 2.650 (3) | 155 |
| C12—H12···O3iii | 0.93 | 2.55 | 3.440 (3) | 159 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3⋯O1 | 0.86 | 1.81 | 2.661 (3) | 172 |
| N1—H1⋯O2i | 0.86 | 1.84 | 2.650 (3) | 155 |
| C12—H12⋯O3ii | 0.93 | 2.55 | 3.440 (3) | 159 |
Symmetry codes: (i) ; (ii) .