Literature DB >> 22346971

Bis(2-trifluoro-methyl-1H-benzimidazol-3-ium) naphthalene-1,5-disulfonate.

Ming-Liang Liu1.   

Abstract

The asymmetric unit of the title compound, C(8)H(6)F(3)N(2) (+)·0.5C(10)H(6)O(6)S(2) (2-), consists of one 2-trifluoro-methyl-1H-benz-imidazol-3-ium cation and a half naphthalene-1,5-disulfate anion, which are linked by an N-H⋯O hydrogen bond. The anion sits across a centre of symmetry. The atoms of the benzimidazole ring are nearly coplanar (r.m.s. deviation of the fitted atoms = 0.0085 Å) and the triflouromethyl group lies out of this plane. In the crystal, the cations are linked to adjacent anions by N-H⋯O hydrogen bonds, forming a ladder structure parallel to the a axis in which the anions form the rungs. Adjacent ladders are linked by weak C-H⋯O inter-actions, forming sheets parallel to the ac plane.

Entities:  

Year:  2012        PMID: 22346971      PMCID: PMC3275026          DOI: 10.1107/S1600536812000049

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was studied as part of a search for ferroelectric complexes. For background to ferroelectric complexes, see: Fu et al. (2011 ▶); Zhang et al. (2010 ▶). For related structures, see: Liu (2011a ▶,b ▶). For graph-set analysis, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

2C8H6F3N2 +·C10H6O6S2 2− M = 660.56 Triclinic, a = 9.3910 (19) Å b = 9.4943 (19) Å c = 9.976 (2) Å α = 109.32 (3)° β = 96.86 (3)° γ = 119.59 (3)° V = 685.2 (5) Å3 Z = 1 Mo Kα radiation μ = 0.29 mm−1 T = 293 K 0.36 × 0.32 × 0.28 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.903, T max = 0.921 7215 measured reflections 3136 independent reflections 2361 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.132 S = 1.10 3136 reflections 227 parameters 36 restraints H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.42 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009) ▶; software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812000049/go2042sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812000049/go2042Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812000049/go2042Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C8H6F3N2+·C10H6O6S22V = 685.2 (5) Å3
Mr = 660.56Z = 1
Triclinic, P1F(000) = 336
Hall symbol: -P 1Dx = 1.601 Mg m3
a = 9.3910 (19) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.4943 (19) Åθ = 3.4–26°
c = 9.976 (2) ŵ = 0.29 mm1
α = 109.32 (3)°T = 293 K
β = 96.86 (3)°Block, colourless
γ = 119.59 (3)°0.36 × 0.32 × 0.28 mm
Rigaku Mercury2 diffractometer3136 independent reflections
Radiation source: fine-focus sealed tube2361 reflections with I > 2σ(I)
graphiteRint = 0.042
CCD_Profile_fitting scansθmax = 27.5°, θmin = 3.2°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)h = −12→12
Tmin = 0.903, Tmax = 0.921k = −12→12
7215 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.0517P)2 + 0.2409P] where P = (Fo2 + 2Fc2)/3
3136 reflections(Δ/σ)max = 0.011
227 parametersΔρmax = 0.23 e Å3
36 restraintsΔρmin = −0.42 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S11.05784 (8)0.72945 (9)0.37188 (7)0.03242 (19)
O10.9734 (2)0.8147 (3)0.3414 (2)0.0398 (4)
O21.2456 (2)0.8519 (2)0.4164 (2)0.0440 (5)
O31.0035 (3)0.6558 (3)0.4750 (2)0.0532 (5)
C110.9978 (3)0.5476 (3)0.1973 (3)0.0300 (5)
C120.9359 (3)0.3826 (3)0.1952 (3)0.0362 (6)
H120.92360.36790.28170.043*
C130.8913 (4)0.2364 (3)0.0616 (3)0.0413 (6)
H130.84680.12340.05940.050*
C140.9117 (3)0.2556 (3)−0.0659 (3)0.0365 (6)
H140.88160.1559−0.15310.044*
C1101.0219 (3)0.5750 (3)0.0670 (3)0.0286 (5)
N10.4697 (3)0.7605 (3)0.4315 (2)0.0360 (5)
H10.37960.76070.40330.043*
N30.7062 (3)0.7706 (3)0.4334 (2)0.0339 (5)
H30.79240.77810.40660.041*
C20.5853 (3)0.7790 (3)0.3630 (3)0.0352 (6)
C40.4442 (4)0.7162 (4)0.6660 (4)0.0518 (7)
H40.34170.70940.66410.062*
C50.5303 (5)0.7028 (5)0.7769 (4)0.0608 (9)
H50.48510.68720.85280.073*
C60.6826 (5)0.7115 (5)0.7797 (4)0.0581 (8)
H60.73690.70270.85790.070*
C70.7555 (4)0.7326 (4)0.6704 (3)0.0468 (7)
H70.85670.73660.67180.056*
C80.6707 (3)0.7477 (3)0.5582 (3)0.0335 (5)
C90.5194 (3)0.7408 (3)0.5562 (3)0.0353 (6)
C210.5768 (4)0.8018 (5)0.2213 (4)0.0523 (7)
F10.5176 (12)0.9023 (10)0.2234 (8)0.0857 (19)0.653 (12)
F20.4588 (17)0.6460 (7)0.1027 (5)0.119 (3)0.653 (12)
F30.7210 (9)0.8792 (17)0.2048 (11)0.113 (3)0.653 (12)
F1A0.450 (2)0.797 (4)0.1674 (19)0.114 (5)0.347 (12)
F2A0.590 (3)0.6822 (19)0.1208 (11)0.086 (3)0.347 (12)
F3A0.720 (2)0.9515 (16)0.2418 (15)0.118 (6)0.347 (12)
U11U22U33U12U13U23
S10.0354 (3)0.0412 (4)0.0305 (3)0.0274 (3)0.0148 (3)0.0162 (3)
O10.0412 (10)0.0540 (11)0.0460 (10)0.0373 (9)0.0240 (8)0.0255 (9)
O20.0311 (10)0.0428 (11)0.0480 (11)0.0247 (9)0.0066 (8)0.0066 (9)
O30.0827 (15)0.0612 (13)0.0382 (11)0.0485 (12)0.0333 (11)0.0294 (10)
C110.0283 (12)0.0354 (13)0.0308 (12)0.0195 (11)0.0136 (10)0.0162 (10)
C120.0424 (14)0.0436 (15)0.0357 (13)0.0274 (13)0.0205 (11)0.0245 (12)
C130.0527 (17)0.0303 (13)0.0433 (15)0.0215 (13)0.0205 (13)0.0214 (12)
C140.0407 (14)0.0325 (13)0.0369 (14)0.0204 (12)0.0153 (11)0.0164 (11)
C1100.0250 (11)0.0332 (13)0.0311 (12)0.0174 (10)0.0121 (9)0.0162 (10)
N10.0281 (10)0.0427 (12)0.0436 (12)0.0242 (10)0.0138 (9)0.0189 (10)
N30.0331 (11)0.0426 (12)0.0399 (11)0.0274 (10)0.0193 (9)0.0212 (10)
C20.0352 (13)0.0353 (14)0.0383 (14)0.0233 (12)0.0143 (11)0.0143 (11)
C40.0491 (17)0.0541 (18)0.0566 (18)0.0284 (15)0.0328 (15)0.0261 (15)
C50.076 (2)0.064 (2)0.0495 (18)0.0369 (19)0.0368 (17)0.0315 (17)
C60.075 (2)0.067 (2)0.0467 (17)0.0448 (19)0.0222 (16)0.0333 (16)
C70.0507 (17)0.0555 (18)0.0481 (16)0.0368 (15)0.0179 (14)0.0270 (14)
C80.0351 (13)0.0331 (13)0.0366 (13)0.0214 (11)0.0159 (11)0.0154 (11)
C90.0336 (13)0.0346 (13)0.0404 (14)0.0205 (11)0.0171 (11)0.0164 (11)
C210.059 (2)0.069 (2)0.0493 (18)0.0446 (18)0.0237 (16)0.0337 (17)
F10.130 (6)0.112 (4)0.072 (4)0.096 (4)0.034 (3)0.056 (3)
F20.187 (8)0.079 (3)0.037 (2)0.052 (4)0.009 (3)0.0200 (19)
F30.086 (4)0.235 (9)0.130 (6)0.112 (5)0.079 (4)0.151 (6)
F1A0.083 (7)0.238 (15)0.095 (9)0.116 (9)0.044 (6)0.108 (10)
F2A0.161 (10)0.099 (7)0.036 (4)0.096 (7)0.043 (5)0.031 (4)
F3A0.160 (11)0.066 (5)0.068 (5)0.016 (5)0.056 (6)0.041 (4)
S1—O31.435 (2)N3—H30.8600
S1—O21.451 (2)C2—C211.498 (4)
S1—O11.4547 (18)C4—C51.369 (5)
S1—C111.774 (3)C4—C91.395 (4)
C11—C121.367 (3)C4—H40.9300
C11—C1101.430 (3)C5—C61.388 (5)
C12—C131.395 (4)C5—H50.9300
C12—H120.9300C6—C71.373 (4)
C13—C141.366 (3)C6—H60.9300
C13—H130.9300C7—C81.384 (4)
C14—C110i1.414 (3)C7—H70.9300
C14—H140.9300C8—C91.386 (3)
C110—C14i1.414 (3)C21—F1A1.223 (11)
C110—C110i1.419 (5)C21—F31.246 (7)
N1—C21.321 (3)C21—F2A1.311 (8)
N1—C91.380 (3)C21—F21.314 (6)
N1—H10.8600C21—F3A1.314 (12)
N3—C21.312 (3)C21—F11.317 (6)
N3—C81.384 (3)
O3—S1—O2113.71 (13)N1—C2—C21124.3 (2)
O3—S1—O1112.87 (11)C5—C4—C9116.0 (3)
O2—S1—O1110.44 (11)C5—C4—H4122.0
O3—S1—C11107.83 (12)C9—C4—H4122.0
O2—S1—C11104.13 (11)C4—C5—C6122.2 (3)
O1—S1—C11107.24 (11)C4—C5—H5118.9
C12—C11—C110121.5 (2)C6—C5—H5118.9
C12—C11—S1117.00 (18)C7—C6—C5121.9 (3)
C110—C11—S1121.37 (17)C7—C6—H6119.0
C11—C12—C13119.2 (2)C5—C6—H6119.0
C11—C12—H12120.4C6—C7—C8116.5 (3)
C13—C12—H12120.4C6—C7—H7121.7
C14—C13—C12121.4 (2)C8—C7—H7121.7
C14—C13—H13119.3N3—C8—C7132.2 (2)
C12—C13—H13119.3N3—C8—C9106.2 (2)
C13—C14—C110i120.9 (2)C7—C8—C9121.5 (2)
C13—C14—H14119.6N1—C9—C8106.8 (2)
C110i—C14—H14119.6N1—C9—C4131.4 (3)
C14i—C110—C110i118.7 (3)C8—C9—C4121.7 (3)
C14i—C110—C11123.1 (2)F1A—C21—F2A110.9 (8)
C110i—C110—C11118.3 (3)F3—C21—F2112.5 (5)
C2—N1—C9107.7 (2)F1A—C21—F3A109.7 (11)
C2—N1—H1126.2F2A—C21—F3A99.4 (8)
C9—N1—H1126.2F3—C21—F1106.2 (5)
C2—N3—C8108.1 (2)F2—C21—F1103.2 (5)
C2—N3—H3126.0F3—C21—C2113.7 (4)
C8—N3—H3126.0F2—C21—C2110.7 (3)
N3—C2—N1111.2 (2)F1—C21—C2109.8 (4)
N3—C2—C21124.5 (2)
O3—S1—C11—C12−8.3 (2)C6—C7—C8—N3179.7 (3)
O2—S1—C11—C12112.8 (2)C6—C7—C8—C9−0.4 (4)
O1—S1—C11—C12−130.1 (2)C2—N1—C9—C8−0.2 (3)
O3—S1—C11—C110174.97 (18)C2—N1—C9—C4−179.7 (3)
O2—S1—C11—C110−63.9 (2)N3—C8—C9—N1−0.3 (3)
O1—S1—C11—C11053.2 (2)C7—C8—C9—N1179.8 (2)
C110—C11—C12—C13−1.5 (4)N3—C8—C9—C4179.2 (2)
S1—C11—C12—C13−178.29 (19)C7—C8—C9—C4−0.7 (4)
C11—C12—C13—C141.4 (4)C5—C4—C9—N1−179.5 (3)
C12—C13—C14—C110i−0.4 (4)C5—C4—C9—C81.1 (4)
C12—C11—C110—C14i−179.0 (2)N3—C2—C21—F1A176.3 (14)
S1—C11—C110—C14i−2.3 (3)N1—C2—C21—F1A−2.1 (15)
C12—C11—C110—C110i0.6 (4)N3—C2—C21—F3−25.8 (8)
S1—C11—C110—C110i177.3 (2)N1—C2—C21—F3155.8 (7)
C8—N3—C2—N1−0.9 (3)N3—C2—C21—F2A50.4 (10)
C8—N3—C2—C21−179.5 (2)N1—C2—C21—F2A−128.0 (10)
C9—N1—C2—N30.7 (3)N3—C2—C21—F2101.9 (8)
C9—N1—C2—C21179.3 (2)N1—C2—C21—F2−76.5 (8)
C9—C4—C5—C6−0.5 (5)N3—C2—C21—F3A−58.3 (10)
C4—C5—C6—C7−0.6 (5)N1—C2—C21—F3A123.3 (10)
C5—C6—C7—C81.0 (5)N3—C2—C21—F1−144.7 (5)
C2—N3—C8—C7−179.3 (3)N1—C2—C21—F136.9 (6)
C2—N3—C8—C90.7 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3···O10.861.812.661 (3)172
N1—H1···O2ii0.861.842.650 (3)155
C12—H12···O3iii0.932.553.440 (3)159
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3⋯O10.861.812.661 (3)172
N1—H1⋯O2i0.861.842.650 (3)155
C12—H12⋯O3ii0.932.553.440 (3)159

Symmetry codes: (i) ; (ii) .

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