Literature DB >> 22589940

2-Trifluoro-methyl-1H-benzimidazol-3-ium tetra-fluoro-borate-2-trifluoro-methyl-1H-benzimidazole-water (1/1/1).

Ming-Liang Liu1.   

Abstract

The asymmetric unit of the title compound, C(8)H(6)F(3)N(2) (+)·BF(4) (-)·C(8)H(5)F(3)N(2)·H(2)O, consists of two 2-trifluoro-methyl-benzimidazole mol-ecules, each of which is protonated on a 50% basis, one tetra-fluoro-borate anion and a water mol-ecule. The two 2-trifluoromethylbenzimidazole mol-ecules thus exist as half-neutral half-cation entities. They are linked by N-H⋯N hydrogen bonds involving the half-occupancy hydrogens in each mol-ecule. The F atoms of one of the trifluoro-methyl groups are disordered over two sets of sites [in a 0.518 (14):0.482 (14) ratio], as are the F atoms of the tetra-fluoroborate anion [0.507 (14):0.493 (14) ratio]. The water mol-ecule is linked to one of the 2-trifluoro-methyl-benzimidazole mol-ecules via an N-H⋯O hydrogen bond.

Entities:  

Year:  2012        PMID: 22589940      PMCID: PMC3344031          DOI: 10.1107/S1600536812010847

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was synthesized as part of our search for ferroelectric complexes. For background to ferroelectric complexes, see: Fu et al. (2011 ▶); Zhang et al. (2010 ▶). For related structures, see: Liu (2011a ▶,b ▶, 2012 ▶).

Experimental

Crystal data

C8H6F3N2 +·BF4 −·C8H5F3N2·H2O M = 478.11 Triclinic, a = 8.7897 (18) Å b = 10.947 (2) Å c = 11.458 (2) Å α = 92.48 (3)° β = 96.59 (3)° γ = 113.34 (3)° V = 1000.8 (3) Å3 Z = 2 Mo Kα radiation μ = 0.17 mm−1 T = 293 K 0.36 × 0.32 × 0.28 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.566, T max = 0.640 10445 measured reflections 4581 independent reflections 2280 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.066 wR(F 2) = 0.195 S = 1.03 4581 reflections 355 parameters 65 restraints H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812010847/go2047sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812010847/go2047Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812010847/go2047Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H6F3N2+·BF4·C8H5F3N2·H2OV = 1000.8 (3) Å3
Mr = 478.11Z = 2
Triclinic, P1F(000) = 480
Hall symbol: -P 1Dx = 1.587 Mg m3
a = 8.7897 (18) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.947 (2) Åθ = 0–25°
c = 11.458 (2) ŵ = 0.17 mm1
α = 92.48 (3)°T = 293 K
β = 96.59 (3)°Block, colourless
γ = 113.34 (3)°0.36 × 0.32 × 0.28 mm
Rigaku SCXmini diffractometer4581 independent reflections
Radiation source: fine-focus sealed tube2280 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.039
CCD_Profile_fitting scansθmax = 27.5°, θmin = 3.0°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)h = −11→11
Tmin = 0.566, Tmax = 0.640k = −14→14
10445 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.066H-atom parameters constrained
wR(F2) = 0.195w = 1/[σ2(Fo2) + (0.073P)2 + 0.2894P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
4581 reflectionsΔρmax = 0.30 e Å3
355 parametersΔρmin = −0.21 e Å3
65 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.020 (4)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
F5−0.1135 (3)0.6112 (3)0.9237 (2)0.1358 (10)
F60.0425 (3)0.6539 (3)1.0868 (3)0.1405 (11)
F7−0.1136 (3)0.7537 (3)1.0522 (3)0.1382 (10)
N10.1904 (3)0.7918 (2)0.8667 (2)0.0594 (6)
H10.16760.71650.82740.071*0.50
N20.1829 (3)0.9413 (3)0.9962 (2)0.0671 (7)
H2A0.15310.97531.05390.081*
C1−0.0170 (5)0.7072 (4)1.0035 (3)0.0815 (10)
C20.1171 (4)0.8130 (3)0.9543 (2)0.0593 (7)
C30.3121 (3)0.9151 (3)0.8501 (2)0.0562 (7)
C40.4274 (4)0.9514 (3)0.7713 (3)0.0740 (9)
H40.43380.88850.71710.089*
C50.5317 (5)1.0842 (4)0.7770 (3)0.0882 (11)
H50.61021.11190.72510.106*
C60.5231 (5)1.1781 (4)0.8579 (4)0.0926 (12)
H60.59511.26740.85800.111*
C70.4121 (4)1.1439 (3)0.9378 (4)0.0810 (10)
H70.40781.20680.99310.097*
C80.3070 (4)1.0102 (3)0.9311 (2)0.0587 (7)
N30.1071 (3)0.5575 (2)0.7327 (2)0.0622 (6)
H30.13640.63410.77170.075*0.50
N40.1163 (3)0.3728 (2)0.6582 (2)0.0627 (6)
H4A0.15440.31350.64290.075*
C90.3685 (3)0.5281 (2)0.7895 (2)0.0757 (9)
C100.1977 (3)0.4870 (3)0.7266 (2)0.0569 (7)
F80.3784 (12)0.5766 (11)0.8977 (4)0.130 (4)0.518 (14)
F90.4883 (7)0.6155 (10)0.7417 (9)0.163 (5)0.518 (14)
F100.4064 (9)0.4244 (5)0.8009 (8)0.105 (3)0.518 (14)
F8A0.4595 (8)0.4758 (11)0.7415 (10)0.161 (5)0.482 (14)
F9A0.4470 (9)0.6579 (3)0.7890 (10)0.117 (3)0.482 (14)
F10A0.3750 (11)0.5061 (12)0.9007 (4)0.135 (4)0.482 (14)
C11−0.0450 (4)0.4836 (3)0.6635 (2)0.0593 (7)
C12−0.0405 (4)0.3665 (3)0.6161 (2)0.0602 (7)
C13−0.1752 (4)0.2705 (3)0.5431 (3)0.0771 (9)
H13−0.17050.19300.51060.093*
C14−0.3154 (5)0.2961 (4)0.5213 (3)0.0897 (11)
H14−0.40980.23320.47430.108*
C15−0.3204 (5)0.4133 (5)0.5675 (3)0.0921 (11)
H15−0.41800.42700.54920.110*
C16−0.1879 (5)0.5100 (4)0.6388 (3)0.0786 (9)
H16−0.19260.58840.66900.094*
F10.8155 (16)0.8437 (14)0.8026 (9)0.191 (5)0.507 (14)
F20.9801 (12)0.8884 (13)0.6676 (9)0.164 (5)0.507 (14)
F30.7345 (11)0.8971 (12)0.6305 (8)0.131 (3)0.507 (14)
F40.9301 (13)1.0476 (8)0.7603 (10)0.175 (4)0.507 (14)
F1A0.8505 (12)0.8938 (8)0.8232 (5)0.105 (3)0.493 (14)
F2A1.0041 (11)0.9229 (11)0.6739 (11)0.123 (3)0.493 (14)
F3A0.7326 (12)0.8392 (17)0.6363 (9)0.208 (6)0.493 (14)
F4A0.875 (2)1.0469 (10)0.7068 (16)0.233 (6)0.493 (14)
B10.8652 (5)0.9202 (4)0.7116 (3)0.0835 (11)
O1W0.2248 (3)0.1817 (2)0.6036 (2)0.0972 (8)
H1A0.21320.17810.52990.146*
H1B0.15720.11310.62790.146*
U11U22U33U12U13U23
F50.121 (2)0.1109 (18)0.1217 (19)−0.0148 (15)0.0434 (16)0.0023 (15)
F60.122 (2)0.165 (2)0.150 (2)0.0578 (18)0.0486 (17)0.103 (2)
F70.125 (2)0.139 (2)0.180 (3)0.0620 (17)0.098 (2)0.0385 (19)
N10.0647 (15)0.0599 (15)0.0577 (14)0.0281 (12)0.0147 (11)0.0044 (11)
N20.0804 (17)0.0739 (17)0.0576 (14)0.0435 (15)0.0091 (13)−0.0042 (13)
C10.081 (2)0.090 (3)0.085 (2)0.039 (2)0.032 (2)0.021 (2)
C20.0667 (18)0.0633 (19)0.0581 (17)0.0347 (15)0.0152 (14)0.0105 (14)
C30.0581 (17)0.0588 (17)0.0529 (16)0.0254 (14)0.0055 (13)0.0079 (13)
C40.074 (2)0.083 (2)0.0670 (19)0.0312 (19)0.0200 (16)0.0147 (17)
C50.076 (2)0.093 (3)0.093 (3)0.026 (2)0.0198 (19)0.035 (2)
C60.077 (2)0.067 (2)0.126 (3)0.0241 (19)−0.003 (2)0.028 (2)
C70.078 (2)0.059 (2)0.103 (3)0.0329 (18)−0.015 (2)−0.0030 (18)
C80.0611 (17)0.0600 (18)0.0571 (16)0.0299 (15)−0.0016 (14)0.0015 (14)
N30.0662 (15)0.0575 (14)0.0627 (14)0.0228 (13)0.0174 (12)0.0043 (11)
N40.0675 (16)0.0614 (15)0.0619 (14)0.0271 (12)0.0180 (12)0.0018 (12)
C90.066 (2)0.071 (2)0.084 (2)0.0213 (18)0.0118 (18)−0.0024 (19)
C100.0589 (17)0.0561 (17)0.0551 (16)0.0210 (14)0.0150 (13)0.0039 (13)
F80.117 (5)0.162 (7)0.106 (5)0.075 (6)−0.042 (4)−0.067 (4)
F90.061 (3)0.191 (8)0.237 (10)0.033 (5)0.047 (5)0.130 (8)
F100.078 (4)0.092 (3)0.151 (6)0.050 (3)−0.013 (3)−0.003 (3)
F8A0.065 (4)0.194 (10)0.207 (10)0.049 (6)0.009 (5)−0.090 (8)
F9A0.053 (4)0.098 (4)0.168 (7)0.000 (3)0.001 (3)0.018 (4)
F10A0.088 (4)0.198 (9)0.100 (5)0.033 (6)0.008 (4)0.068 (5)
C110.0651 (18)0.0645 (18)0.0503 (15)0.0260 (15)0.0143 (14)0.0116 (13)
C120.0653 (19)0.0672 (19)0.0472 (15)0.0237 (15)0.0153 (14)0.0080 (13)
C130.080 (2)0.082 (2)0.0578 (18)0.0223 (18)0.0085 (16)−0.0049 (16)
C140.078 (2)0.114 (3)0.062 (2)0.025 (2)0.0044 (17)0.002 (2)
C150.081 (3)0.135 (4)0.070 (2)0.054 (3)0.0062 (19)0.017 (2)
C160.085 (2)0.091 (2)0.072 (2)0.048 (2)0.0146 (19)0.0147 (18)
F10.141 (6)0.243 (10)0.136 (7)0.019 (8)0.012 (5)0.086 (8)
F20.181 (8)0.289 (13)0.104 (6)0.188 (10)0.009 (5)−0.012 (6)
F30.102 (5)0.214 (8)0.092 (4)0.093 (5)−0.016 (4)−0.020 (4)
F40.173 (7)0.131 (6)0.174 (8)0.018 (5)0.037 (6)−0.071 (5)
F1A0.134 (6)0.129 (5)0.060 (3)0.063 (5)0.018 (3)−0.015 (3)
F2A0.091 (4)0.140 (6)0.143 (8)0.039 (4)0.053 (5)0.031 (5)
F3A0.106 (5)0.339 (14)0.083 (4)−0.008 (7)0.013 (4)−0.018 (7)
F4A0.264 (14)0.170 (7)0.361 (18)0.151 (8)0.140 (12)0.133 (9)
B10.087 (3)0.095 (3)0.076 (3)0.043 (3)0.015 (2)0.010 (2)
O1W0.117 (2)0.0938 (18)0.0889 (17)0.0516 (15)0.0183 (15)−0.0090 (13)
F5—C11.301 (4)C9—F8A1.306 (2)
F6—C11.305 (4)C9—F10A1.306 (2)
F7—C11.311 (4)C9—F81.307 (2)
N1—C21.312 (3)C9—F101.311 (2)
N1—C31.388 (4)C9—F9A1.312 (2)
N1—H10.8600C9—C101.471 (3)
N2—C21.331 (3)C11—C121.388 (4)
N2—C81.378 (4)C11—C161.398 (4)
N2—H2A0.8600C12—C131.384 (4)
C1—C21.475 (5)C13—C141.367 (5)
C3—C81.382 (4)C13—H130.9300
C3—C41.387 (4)C14—C151.386 (5)
C4—C51.371 (5)C14—H140.9300
C4—H40.9300C15—C161.369 (5)
C5—C61.385 (5)C15—H150.9300
C5—H50.9300C16—H160.9300
C6—C71.370 (5)F1—B11.368 (7)
C6—H60.9300F2—B11.332 (6)
C7—C81.379 (4)F3—B11.324 (7)
C7—H70.9300F4—B11.346 (7)
N3—C101.316 (3)F1A—B11.332 (7)
N3—C111.383 (4)F2A—B11.332 (7)
N3—H30.8600F3A—B11.332 (7)
N4—C101.329 (3)F4A—B11.361 (7)
N4—C121.380 (4)O1W—H1A0.8362
N4—H4A0.8600O1W—H1B0.8349
C9—F91.305 (2)
C2—N1—C3106.4 (2)F8A—C9—F9A106.1 (3)
C2—N1—H1126.8F10A—C9—F9A105.4 (3)
C3—N1—H1126.8F9—C9—C10116.2 (4)
C2—N2—C8108.2 (2)F8A—C9—C10114.7 (4)
C2—N2—H2A125.9F10A—C9—C10114.2 (5)
C8—N2—H2A125.9F8—C9—C10110.4 (4)
F5—C1—F6107.6 (3)F10—C9—C10110.7 (3)
F5—C1—F7106.9 (3)F9A—C9—C10108.2 (4)
F6—C1—F7105.5 (3)N3—C10—N4112.2 (2)
F5—C1—C2112.5 (3)N3—C10—C9124.2 (2)
F6—C1—C2112.1 (3)N4—C10—C9123.6 (2)
F7—C1—C2111.8 (3)N3—C11—C12108.4 (3)
N1—C2—N2111.6 (3)N3—C11—C16130.7 (3)
N1—C2—C1124.3 (3)C12—C11—C16120.9 (3)
N2—C2—C1124.0 (3)N4—C12—C13132.0 (3)
C8—C3—C4120.4 (3)N4—C12—C11105.6 (2)
C8—C3—N1108.3 (2)C13—C12—C11122.3 (3)
C4—C3—N1131.3 (3)C14—C13—C12116.3 (3)
C5—C4—C3117.0 (3)C14—C13—H13121.8
C5—C4—H4121.5C12—C13—H13121.8
C3—C4—H4121.5C13—C14—C15121.6 (3)
C4—C5—C6121.7 (3)C13—C14—H14119.2
C4—C5—H5119.2C15—C14—H14119.2
C6—C5—H5119.2C16—C15—C14122.9 (4)
C7—C6—C5122.2 (3)C16—C15—H15118.6
C7—C6—H6118.9C14—C15—H15118.6
C5—C6—H6118.9C15—C16—C11115.9 (3)
C6—C7—C8115.8 (3)C15—C16—H16122.0
C6—C7—H7122.1C11—C16—H16122.0
C8—C7—H7122.1F3—B1—F2111.2 (6)
N2—C8—C7131.5 (3)F2A—B1—F3A109.3 (8)
N2—C8—C3105.5 (2)F2A—B1—F1A115.8 (7)
C7—C8—C3123.0 (3)F3A—B1—F1A112.5 (7)
C10—N3—C11106.1 (2)F3—B1—F4110.9 (6)
C10—N3—H3126.9F2—B1—F4111.7 (7)
C11—N3—H3126.9F1A—B1—F482.7 (7)
C10—N4—C12107.6 (2)F2A—B1—F4A105.0 (7)
C10—N4—H4A126.2F3A—B1—F4A107.9 (8)
C12—N4—H4A126.2F1A—B1—F4A105.7 (7)
F8A—C9—F10A107.6 (4)F3—B1—F1109.8 (7)
F9—C9—F8107.6 (4)F2—B1—F1107.6 (7)
F9—C9—F10106.5 (3)F4—B1—F1105.4 (6)
F8—C9—F10104.6 (3)H1A—O1W—H1B112.4
C3—N1—C2—N2−0.3 (3)C12—N4—C10—C9178.8 (2)
C3—N1—C2—C1−178.0 (3)F9—C9—C10—N3−79.8 (7)
C8—N2—C2—N10.8 (3)F8A—C9—C10—N3−155.5 (8)
C8—N2—C2—C1178.5 (3)F10A—C9—C10—N379.6 (7)
F5—C1—C2—N1−33.5 (5)F8—C9—C10—N343.1 (6)
F6—C1—C2—N187.9 (4)F10—C9—C10—N3158.5 (5)
F7—C1—C2—N1−153.8 (3)F9A—C9—C10—N3−37.4 (6)
F5—C1—C2—N2149.1 (3)F9—C9—C10—N4101.1 (7)
F6—C1—C2—N2−89.5 (4)F8A—C9—C10—N425.4 (8)
F7—C1—C2—N228.8 (5)F10A—C9—C10—N4−99.4 (7)
C2—N1—C3—C8−0.3 (3)F8—C9—C10—N4−135.9 (6)
C2—N1—C3—C4179.1 (3)F10—C9—C10—N4−20.6 (6)
C8—C3—C4—C5−1.1 (4)F9A—C9—C10—N4143.6 (6)
N1—C3—C4—C5179.6 (3)C10—N3—C11—C12−0.1 (3)
C3—C4—C5—C60.3 (5)C10—N3—C11—C16179.6 (3)
C4—C5—C6—C70.9 (6)C10—N4—C12—C13−179.4 (3)
C5—C6—C7—C8−1.2 (5)C10—N4—C12—C110.3 (3)
C2—N2—C8—C7179.7 (3)N3—C11—C12—N4−0.1 (3)
C2—N2—C8—C3−0.9 (3)C16—C11—C12—N4−179.8 (3)
C6—C7—C8—N2179.8 (3)N3—C11—C12—C13179.6 (3)
C6—C7—C8—C30.4 (4)C16—C11—C12—C13−0.2 (4)
C4—C3—C8—N2−178.8 (3)N4—C12—C13—C14178.5 (3)
N1—C3—C8—N20.7 (3)C11—C12—C13—C14−1.1 (4)
C4—C3—C8—C70.7 (4)C12—C13—C14—C151.6 (5)
N1—C3—C8—C7−179.8 (3)C13—C14—C15—C16−1.0 (6)
C11—N3—C10—N40.3 (3)C14—C15—C16—C11−0.3 (5)
C11—N3—C10—C9−178.8 (2)N3—C11—C16—C15−178.9 (3)
C12—N4—C10—N3−0.4 (3)C12—C11—C16—C150.8 (4)
D—H···AD—HH···AD···AD—H···A
N4—H4A···O1W0.861.842.698 (3)177
N1—H1···N30.861.862.718 (3)175
N3—H3···N10.861.862.718 (3)175
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4A⋯O1W0.861.842.698 (3)177
N1—H1⋯N30.861.862.718 (3)175
N3—H3⋯N10.861.862.718 (3)175
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Supramolecular bola-like ferroelectric: 4-methoxyanilinium tetrafluoroborate-18-crown-6.

Authors:  Da-Wei Fu; Wen Zhang; Hong-Ling Cai; Yi Zhang; Jia-Zhen Ge; Ren-Gen Xiong; Songping D Huang
Journal:  J Am Chem Soc       Date:  2011-07-25       Impact factor: 15.419

3.  2-Trifluoro-methyl-1H-benzimidazol-3-ium perchlorate.

Authors:  Ming-Liang Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-05

4.  2-Trifluoro-methyl-1H-benzimidazol-3-ium hydrogen sulfate.

Authors:  Ming-Liang Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30

5.  Bis(2-trifluoro-methyl-1H-benzimidazol-3-ium) naphthalene-1,5-disulfonate.

Authors:  Ming-Liang Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  2 in total

1.  2-Trifluoro-methyl-1H-benzimidazole.

Authors:  Ming-Liang Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-25

2.  Bis(2-trifluoro-methyl-1H-benzimidazol-3-ium) tetra-chloridomercurate dihydrate.

Authors:  Ming-Liang Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-02
  2 in total

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