Literature DB >> 22199947

2-Trifluoro-methyl-1H-benzimidazol-3-ium hydrogen sulfate.

Ming-Liang Liu1.   

Abstract

In the crystal of the title mol-ecular salt, C(8)H(6)F(3)N(2) (+)·HSO(4) (-), cation-to-anion N-H⋯O hydrogen bonds generate [100] chains. Anion-to-anion O-H⋯O hydrogen bonds generate [001] helices and cross-link the chains into a three-dimensional network.

Entities:  

Year:  2011        PMID: 22199947      PMCID: PMC3239099          DOI: 10.1107/S1600536811048811

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure and background to mol­ecular salts, see: Liu (2011 ▶).

Experimental

Crystal data

C8H6F3N2HSO4 M = 284.22 Hexagonal, a = 9.4119 (13) Å c = 21.960 (4) Å V = 1684.7 (5) Å3 Z = 6 Mo Kα radiation μ = 0.34 mm−1 T = 293 K 0.20 × 0.20 × 0.20 mm

Data collection

Rigaku Mercury2 CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.935, T max = 0.935 14287 measured reflections 1977 independent reflections 1941 reflections with I > 2σ(I) R int = 0.038

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.134 S = 1.11 1977 reflections 167 parameters 8 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.53 e Å−3 Δρmin = −0.25 e Å−3 Absolute structure: Flack (1983 ▶), 957 Friedel pairs Flack parameter: 0.03 (16) Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811048811/hb6491sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811048811/hb6491Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811048811/hb6491Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H6F3N2+·HSO4F(000) = 864
Mr = 284.22Dx = 1.681 Mg m3
Hexagonal, P65Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 65θ = 3.1–27.6°
a = 9.4119 (13) ŵ = 0.34 mm1
c = 21.960 (4) ÅT = 293 K
V = 1684.7 (5) Å3Block, colorless
Z = 60.20 × 0.20 × 0.20 mm
Rigaku Mercury2 CCD diffractometer1977 independent reflections
Radiation source: fine-focus sealed tube1941 reflections with I > 2σ(I)
graphiteRint = 0.038
CCD_Profile_fitting scansθmax = 25.0°, θmin = 3.1°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)h = −11→11
Tmin = 0.935, Tmax = 0.935k = −11→11
14287 measured reflectionsl = −26→26
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.134w = 1/[σ2(Fo2) + (0.0593P)2 + 1.9666P] where P = (Fo2 + 2Fc2)/3
S = 1.11(Δ/σ)max < 0.001
1977 reflectionsΔρmax = 0.53 e Å3
167 parametersΔρmin = −0.25 e Å3
8 restraintsAbsolute structure: Flack (1983), 957 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.03 (16)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.09970 (14)0.72553 (17)0.16867 (6)0.0442 (3)
N10.4873 (5)0.7391 (5)0.1735 (2)0.0418 (9)
H1A0.38430.70580.17700.050*
N20.7169 (4)0.7349 (5)0.16388 (17)0.0348 (8)
H2A0.78350.69810.15960.042*
C30.6124 (6)0.9017 (6)0.1722 (2)0.0418 (11)
C80.7613 (5)0.9011 (6)0.1675 (2)0.0371 (10)
C40.6126 (7)1.0512 (7)0.1762 (3)0.0508 (13)
H40.51521.05350.17920.061*
O3−0.0637 (4)0.6347 (5)0.14218 (18)0.0558 (11)
F30.5450 (5)0.4034 (5)0.1391 (3)0.0928 (15)
C60.9082 (7)1.1891 (7)0.1712 (3)0.0527 (13)
H61.00661.28830.17100.063*
O10.0866 (5)0.8248 (5)0.2230 (2)0.0627 (11)
C50.7592 (8)1.1907 (7)0.1755 (3)0.0589 (15)
H50.76231.29090.17800.071*
F10.3262 (5)0.4077 (6)0.1346 (3)0.116 (2)
F20.4211 (10)0.3991 (6)0.2195 (2)0.157 (3)
O40.1589 (5)0.6207 (5)0.19150 (19)0.0571 (11)
C70.9120 (6)1.0455 (7)0.1670 (3)0.0456 (11)
H71.01031.04480.16410.055*
C10.4609 (6)0.4596 (7)0.1670 (3)0.0520 (13)
O20.2184 (6)0.8507 (9)0.1300 (3)0.110 (2)
C20.5531 (5)0.6434 (6)0.1683 (2)0.0373 (9)
H10.041 (10)0.754 (9)0.251 (3)0.10 (3)*
U11U22U33U12U13U23
S10.0252 (5)0.0626 (9)0.0458 (6)0.0227 (5)0.0080 (5)0.0144 (6)
N10.0295 (19)0.051 (2)0.051 (2)0.0252 (19)−0.0012 (18)−0.0049 (19)
N20.0243 (17)0.044 (2)0.040 (2)0.0205 (16)0.0009 (16)−0.0062 (18)
C30.037 (2)0.050 (3)0.043 (3)0.025 (2)0.001 (2)−0.002 (2)
C80.037 (2)0.043 (3)0.037 (2)0.024 (2)−0.006 (2)−0.005 (2)
C40.057 (3)0.058 (3)0.059 (3)0.044 (3)−0.002 (3)0.003 (3)
O30.0362 (19)0.087 (3)0.059 (2)0.042 (2)−0.0057 (16)−0.015 (2)
F30.070 (2)0.058 (2)0.158 (4)0.038 (2)0.018 (3)−0.012 (3)
C60.044 (3)0.045 (3)0.062 (3)0.017 (2)0.006 (3)0.009 (3)
O10.056 (3)0.048 (2)0.079 (3)0.022 (2)−0.009 (2)−0.012 (2)
C50.073 (4)0.052 (3)0.070 (4)0.045 (3)−0.005 (3)0.005 (3)
F10.047 (2)0.070 (3)0.213 (6)0.0161 (19)−0.039 (3)−0.044 (3)
F20.246 (6)0.055 (3)0.072 (3)0.002 (3)0.038 (4)0.009 (2)
O40.0403 (19)0.074 (3)0.072 (3)0.039 (2)0.0007 (17)0.007 (2)
C70.030 (2)0.055 (3)0.050 (3)0.020 (2)−0.002 (2)0.003 (2)
C10.036 (3)0.043 (3)0.067 (3)0.012 (2)0.014 (3)−0.001 (3)
O20.057 (3)0.155 (5)0.108 (4)0.045 (3)0.032 (3)0.093 (4)
C20.030 (2)0.040 (2)0.042 (2)0.0176 (19)0.0001 (19)−0.010 (2)
S1—O21.429 (5)C4—C51.348 (9)
S1—O41.444 (4)C4—H40.9300
S1—O31.456 (4)F3—C11.304 (6)
S1—O11.558 (5)C6—C71.373 (8)
N1—C21.329 (6)C6—C51.414 (8)
N1—C31.388 (6)C6—H60.9300
N1—H1A0.8600O1—H10.86 (2)
N2—C21.341 (6)C5—H50.9300
N2—C81.405 (6)F1—C11.317 (8)
N2—H2A0.8600F2—C11.258 (8)
C3—C81.407 (6)C7—H70.9300
C3—C41.409 (7)C1—C21.499 (7)
C8—C71.390 (7)
O2—S1—O4111.1 (3)C3—C4—H4121.2
O2—S1—O3114.0 (3)C7—C6—C5122.0 (5)
O4—S1—O3113.1 (3)C7—C6—H6119.0
O2—S1—O1103.0 (4)C5—C6—H6119.0
O4—S1—O1108.5 (3)S1—O1—H1104 (7)
O3—S1—O1106.3 (2)C4—C5—C6121.9 (5)
C2—N1—C3108.6 (4)C4—C5—H5119.1
C2—N1—H1A125.7C6—C5—H5119.1
C3—N1—H1A125.7C6—C7—C8116.5 (4)
C2—N2—C8108.5 (3)C6—C7—H7121.8
C2—N2—H2A125.8C8—C7—H7121.8
C8—N2—H2A125.8F2—C1—F3110.5 (7)
N1—C3—C8107.2 (4)F2—C1—F1108.3 (6)
N1—C3—C4132.5 (4)F3—C1—F1105.2 (5)
C8—C3—C4120.3 (5)F2—C1—C2112.0 (5)
C7—C8—N2132.7 (4)F3—C1—C2111.0 (4)
C7—C8—C3121.9 (4)F1—C1—C2109.5 (5)
N2—C8—C3105.4 (4)N1—C2—N2110.3 (4)
C5—C4—C3117.5 (5)N1—C2—C1125.9 (4)
C5—C4—H4121.2N2—C2—C1123.8 (4)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O3i0.861.852.707 (5)173
N1—H1A···O40.861.882.740 (7)174
O1—H1···O2ii0.86 (2)1.86 (6)2.608 (7)145 (9)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O3i0.861.852.707 (5)173
N1—H1A⋯O40.861.882.740 (7)174
O1—H1⋯O2ii0.86 (2)1.86 (6)2.608 (7)145 (9)

Symmetry codes: (i) ; (ii) .

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