Literature DB >> 22590385

2-Trifluoro-methyl-1H-benzimidazole.

Ming-Liang Liu1.   

Abstract

The asymmetric unit of the title compound, C(8)H(5)F(3)N(2), consists of two half-mol-ecules, one lies on a mirror plane and the other is generated by twofold rotation symmetry, with the axis running through the trifluoro-methyl C atom and the attached benzimidazole C atom. The two 2-trifluoro-methyl-1H-benzimidazole mol-ecules are connected by N-H⋯N hydrogen bonds involving the disordered NH H atoms into chains running parallel to the c axis. One of the trifluoro-methyl groups is disordered over two orientations of equal occupancy.

Entities:  

Year:  2012        PMID: 22590385      PMCID: PMC3344623          DOI: 10.1107/S1600536812017357

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to ferroelectric complexes, see: Fu et al. (2011 ▶); Zhang et al. (2010 ▶). For related structures, see: Liu (2011a ▶,b ▶, 2012a ▶,b ▶,c ▶). For graph-set analysis, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C8H5F3N2 M = 186.14 Orthorhombic, a = 11.859 (2) Å b = 7.2154 (14) Å c = 19.508 (4) Å V = 1669.2 (5) Å3 Z = 8 Mo Kα radiation μ = 0.14 mm−1 T = 293 K 0.36 × 0.32 × 0.28 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.952, T max = 0.962 13301 measured reflections 1523 independent reflections 983 reflections with I > 2σ(I) R int = 0.074

Refinement

R[F 2 > 2σ(F 2)] = 0.071 wR(F 2) = 0.168 S = 1.04 1523 reflections 129 parameters H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.23 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812017357/go2052sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812017357/go2052Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812017357/go2052Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H5F3N2F(000) = 752
Mr = 186.14Dx = 1.481 Mg m3
Orthorhombic, PbcmMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2c 2bθ = 0–25°
a = 11.859 (2) ŵ = 0.14 mm1
b = 7.2154 (14) ÅT = 293 K
c = 19.508 (4) ÅBlock, colourless
V = 1669.2 (5) Å30.36 × 0.32 × 0.28 mm
Z = 8
Rigaku SCXmini diffractometer1523 independent reflections
Radiation source: fine-focus sealed tube983 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.074
CCD_Profile_fitting scansθmax = 25.0°, θmin = 3.3°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)h = −14→14
Tmin = 0.952, Tmax = 0.962k = −8→8
13301 measured reflectionsl = −23→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.071Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.168H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0577P)2 + 1.2173P] where P = (Fo2 + 2Fc2)/3
1523 reflections(Δ/σ)max < 0.001
129 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C20.2645 (4)0.25000.50000.0595 (12)
C10.14185 (18)0.25000.50000.101 (2)
F1A0.09271 (18)0.17700.55340.157 (4)0.50
F1B0.09835 (18)0.16550.44690.191 (5)0.50
F1C0.10542 (18)0.42100.49640.213 (5)0.50
N10.3246 (2)0.2091 (3)0.55507 (11)0.0576 (7)
H1A0.30000.17950.59510.069*0.50
C30.4353 (2)0.2242 (4)0.53443 (14)0.0495 (7)
C40.5347 (3)0.1964 (5)0.5697 (2)0.0760 (11)
H40.53500.16060.61550.091*
C50.6321 (3)0.2236 (6)0.5345 (2)0.0986 (16)
H50.70060.20670.55680.118*
F10A0.3495 (3)0.4573 (4)0.80332 (12)0.1403 (12)
F10B0.4734 (4)0.3146 (6)0.75000.1557 (19)
N40.2610 (2)0.1033 (4)0.69268 (12)0.0641 (8)
H4A0.27490.13640.65120.077*0.50
C90.3662 (6)0.3519 (8)0.75000.0806 (17)
C100.2953 (4)0.1861 (6)0.75000.0605 (12)
C120.1984 (3)−0.0467 (5)0.71420 (15)0.0623 (9)
C130.1394 (3)−0.1800 (6)0.6772 (2)0.0855 (12)
H130.1382−0.18000.62950.103*
C140.0830 (4)−0.3113 (7)0.7148 (2)0.1073 (16)
H140.0434−0.40360.69170.129*
U11U22U33U12U13U23
C20.059 (3)0.076 (3)0.044 (3)0.0000.000−0.002 (2)
C10.066 (4)0.134 (6)0.102 (5)0.0000.0000.004 (4)
F1A0.078 (4)0.304 (13)0.088 (5)−0.044 (9)0.024 (5)0.041 (5)
F1B0.075 (5)0.376 (17)0.121 (6)−0.035 (10)−0.039 (5)−0.054 (7)
F1C0.089 (5)0.263 (10)0.288 (12)0.077 (6)0.034 (12)0.078 (11)
N10.0703 (17)0.0672 (18)0.0354 (13)−0.0017 (13)−0.0008 (13)0.0038 (11)
C30.0575 (18)0.0449 (17)0.0461 (15)0.0004 (14)−0.0057 (14)−0.0042 (13)
C40.082 (3)0.062 (2)0.084 (2)0.0088 (19)−0.026 (2)−0.0089 (19)
C50.070 (2)0.068 (3)0.158 (5)0.011 (2)−0.030 (2)−0.033 (3)
F10A0.216 (3)0.113 (2)0.0923 (18)−0.069 (2)0.0224 (18)−0.0384 (15)
F10B0.097 (3)0.117 (3)0.252 (6)−0.040 (3)0.0000.000
N40.081 (2)0.0755 (19)0.0357 (13)−0.0105 (15)0.0007 (13)−0.0028 (13)
C90.117 (5)0.082 (4)0.043 (3)−0.027 (4)0.0000.000
C100.076 (3)0.069 (3)0.037 (2)−0.010 (3)0.0000.000
C120.059 (2)0.073 (2)0.0549 (17)−0.0047 (17)0.0013 (15)−0.0026 (16)
C130.076 (3)0.098 (3)0.083 (3)−0.012 (2)−0.001 (2)−0.025 (2)
C140.087 (3)0.099 (3)0.135 (4)−0.030 (2)−0.005 (2)−0.022 (3)
C2—N1i1.323 (3)C5—H50.9300
C2—N11.323 (3)F10A—C91.303 (4)
C2—C11.454 (5)F10B—C91.300 (7)
C1—F1Ai1.3052N4—C101.331 (3)
C1—F1A1.3053N4—C121.378 (4)
C1—F1B1.3079N4—H4A0.8600
C1—F1Bi1.3079C9—F10Aii1.304 (4)
C1—F1Ci1.3095C9—C101.462 (7)
C1—F1C1.3095C10—N4ii1.331 (3)
N1—C31.377 (4)C12—C131.392 (5)
N1—H1A0.8600C12—C12ii1.397 (6)
C3—C41.380 (4)C13—C141.372 (6)
C3—C3i1.394 (5)C13—H130.9300
C4—C51.359 (5)C14—C14ii1.375 (9)
C4—H40.9300C14—H140.9300
C5—C5i1.399 (9)
N1i—C2—N1114.7 (4)C4—C5—C5i121.8 (2)
N1i—C2—C1122.6 (2)C4—C5—H5119.1
N1—C2—C1122.6 (2)C5i—C5—H5119.1
F1A—C1—F1B105.6C10—N4—C12105.1 (3)
F1Ai—C1—F1Bi105.6C10—N4—H4A127.4
F1Ai—C1—F1Ci106.0C12—N4—H4A127.4
F1Bi—C1—F1Ci105.4F10B—C9—F10A105.6 (4)
F1A—C1—F1C106.0F10B—C9—F10Aii105.6 (4)
F1B—C1—F1C105.4F10A—C9—F10Aii105.9 (5)
F1Ai—C1—C2116.522 (6)F10B—C9—C10113.1 (5)
F1A—C1—C2116.519 (5)F10A—C9—C10113.0 (3)
F1B—C1—C2113.229 (5)F10Aii—C9—C10113.0 (3)
F1Bi—C1—C2113.230 (5)N4—C10—N4ii114.3 (4)
F1Ci—C1—C2109.263 (5)N4—C10—C9122.9 (2)
F1C—C1—C2109.262 (5)N4ii—C10—C9122.9 (2)
C2—N1—C3105.0 (3)N4—C12—C13131.0 (3)
C2—N1—H1A127.5N4—C12—C12ii107.74 (16)
C3—N1—H1A127.5C13—C12—C12ii121.3 (2)
N1—C3—C4131.0 (3)C14—C13—C12116.4 (4)
N1—C3—C3i107.64 (15)C14—C13—H13121.8
C4—C3—C3i121.3 (2)C12—C13—H13121.8
C5—C4—C3116.9 (4)C13—C14—C14ii122.3 (2)
C5—C4—H4121.5C13—C14—H14118.9
C3—C4—H4121.5C14ii—C14—H14118.9
N1i—C2—C1—F1Ai−11.43 (13)N1—C3—C4—C5−179.7 (3)
N1—C2—C1—F1Ai168.57 (13)C3i—C3—C4—C50.7 (5)
N1i—C2—C1—F1A168.57 (13)C3—C4—C5—C5i−0.4 (7)
N1—C2—C1—F1A−11.43 (13)C12—N4—C10—N4ii0.2 (5)
N1i—C2—C1—F1B45.84 (13)C12—N4—C10—C9179.2 (5)
N1—C2—C1—F1B−134.16 (13)F10B—C9—C10—N4−89.5 (4)
N1i—C2—C1—F1Bi−134.16 (13)F10A—C9—C10—N4150.6 (4)
N1—C2—C1—F1Bi45.84 (13)F10Aii—C9—C10—N430.4 (8)
N1i—C2—C1—F1Ci108.66 (13)F10B—C9—C10—N4ii89.5 (4)
N1—C2—C1—F1Ci−71.34 (13)F10A—C9—C10—N4ii−30.4 (8)
N1i—C2—C1—F1C−71.34 (13)F10Aii—C9—C10—N4ii−150.6 (4)
N1—C2—C1—F1C108.66 (13)C10—N4—C12—C13178.1 (4)
N1i—C2—N1—C3−0.07 (14)C10—N4—C12—C12ii−0.1 (3)
C1—C2—N1—C3179.93 (14)N4—C12—C13—C14−178.8 (4)
C2—N1—C3—C4−179.4 (3)C12ii—C12—C13—C14−0.8 (4)
C2—N1—C3—C3i0.2 (3)C12—C13—C14—C14ii0.8 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···N40.862.032.891 (3)173
N4—H4A···N10.862.032.891 (3)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯N40.862.032.891 (3)173
N4—H4A⋯N10.862.032.891 (3)174
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