| Literature DB >> 22590385 |
Abstract
The asymmetric unit of the title compound, C(8)H(5)F(3)N(2), consists of two half-mol-ecules, one lies on a mirror plane and the other is generated by twofold rotation symmetry, with the axis running through the trifluoro-methyl C atom and the attached benzimidazole C atom. The two 2-trifluoro-methyl-1H-benzimidazole mol-ecules are connected by N-H⋯N hydrogen bonds involving the disordered NH H atoms into chains running parallel to the c axis. One of the trifluoro-methyl groups is disordered over two orientations of equal occupancy.Entities:
Year: 2012 PMID: 22590385 PMCID: PMC3344623 DOI: 10.1107/S1600536812017357
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H5F3N2 | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2c 2b | θ = 0–25° |
| µ = 0.14 mm−1 | |
| Block, colourless | |
| 0.36 × 0.32 × 0.28 mm | |
| Rigaku SCXmini diffractometer | 1523 independent reflections |
| Radiation source: fine-focus sealed tube | 983 reflections with |
| Graphite monochromator | |
| CCD_Profile_fitting scans | θmax = 25.0°, θmin = 3.3° |
| Absorption correction: multi-scan ( | |
| 13301 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1523 reflections | (Δ/σ)max < 0.001 |
| 129 parameters | Δρmax = 0.28 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| C2 | 0.2645 (4) | 0.2500 | 0.5000 | 0.0595 (12) | |
| C1 | 0.14185 (18) | 0.2500 | 0.5000 | 0.101 (2) | |
| F1A | 0.09271 (18) | 0.1770 | 0.5534 | 0.157 (4) | 0.50 |
| F1B | 0.09835 (18) | 0.1655 | 0.4469 | 0.191 (5) | 0.50 |
| F1C | 0.10542 (18) | 0.4210 | 0.4964 | 0.213 (5) | 0.50 |
| N1 | 0.3246 (2) | 0.2091 (3) | 0.55507 (11) | 0.0576 (7) | |
| H1A | 0.3000 | 0.1795 | 0.5951 | 0.069* | 0.50 |
| C3 | 0.4353 (2) | 0.2242 (4) | 0.53443 (14) | 0.0495 (7) | |
| C4 | 0.5347 (3) | 0.1964 (5) | 0.5697 (2) | 0.0760 (11) | |
| H4 | 0.5350 | 0.1606 | 0.6155 | 0.091* | |
| C5 | 0.6321 (3) | 0.2236 (6) | 0.5345 (2) | 0.0986 (16) | |
| H5 | 0.7006 | 0.2067 | 0.5568 | 0.118* | |
| F10A | 0.3495 (3) | 0.4573 (4) | 0.80332 (12) | 0.1403 (12) | |
| F10B | 0.4734 (4) | 0.3146 (6) | 0.7500 | 0.1557 (19) | |
| N4 | 0.2610 (2) | 0.1033 (4) | 0.69268 (12) | 0.0641 (8) | |
| H4A | 0.2749 | 0.1364 | 0.6512 | 0.077* | 0.50 |
| C9 | 0.3662 (6) | 0.3519 (8) | 0.7500 | 0.0806 (17) | |
| C10 | 0.2953 (4) | 0.1861 (6) | 0.7500 | 0.0605 (12) | |
| C12 | 0.1984 (3) | −0.0467 (5) | 0.71420 (15) | 0.0623 (9) | |
| C13 | 0.1394 (3) | −0.1800 (6) | 0.6772 (2) | 0.0855 (12) | |
| H13 | 0.1382 | −0.1800 | 0.6295 | 0.103* | |
| C14 | 0.0830 (4) | −0.3113 (7) | 0.7148 (2) | 0.1073 (16) | |
| H14 | 0.0434 | −0.4036 | 0.6917 | 0.129* |
| C2 | 0.059 (3) | 0.076 (3) | 0.044 (3) | 0.000 | 0.000 | −0.002 (2) |
| C1 | 0.066 (4) | 0.134 (6) | 0.102 (5) | 0.000 | 0.000 | 0.004 (4) |
| F1A | 0.078 (4) | 0.304 (13) | 0.088 (5) | −0.044 (9) | 0.024 (5) | 0.041 (5) |
| F1B | 0.075 (5) | 0.376 (17) | 0.121 (6) | −0.035 (10) | −0.039 (5) | −0.054 (7) |
| F1C | 0.089 (5) | 0.263 (10) | 0.288 (12) | 0.077 (6) | 0.034 (12) | 0.078 (11) |
| N1 | 0.0703 (17) | 0.0672 (18) | 0.0354 (13) | −0.0017 (13) | −0.0008 (13) | 0.0038 (11) |
| C3 | 0.0575 (18) | 0.0449 (17) | 0.0461 (15) | 0.0004 (14) | −0.0057 (14) | −0.0042 (13) |
| C4 | 0.082 (3) | 0.062 (2) | 0.084 (2) | 0.0088 (19) | −0.026 (2) | −0.0089 (19) |
| C5 | 0.070 (2) | 0.068 (3) | 0.158 (5) | 0.011 (2) | −0.030 (2) | −0.033 (3) |
| F10A | 0.216 (3) | 0.113 (2) | 0.0923 (18) | −0.069 (2) | 0.0224 (18) | −0.0384 (15) |
| F10B | 0.097 (3) | 0.117 (3) | 0.252 (6) | −0.040 (3) | 0.000 | 0.000 |
| N4 | 0.081 (2) | 0.0755 (19) | 0.0357 (13) | −0.0105 (15) | 0.0007 (13) | −0.0028 (13) |
| C9 | 0.117 (5) | 0.082 (4) | 0.043 (3) | −0.027 (4) | 0.000 | 0.000 |
| C10 | 0.076 (3) | 0.069 (3) | 0.037 (2) | −0.010 (3) | 0.000 | 0.000 |
| C12 | 0.059 (2) | 0.073 (2) | 0.0549 (17) | −0.0047 (17) | 0.0013 (15) | −0.0026 (16) |
| C13 | 0.076 (3) | 0.098 (3) | 0.083 (3) | −0.012 (2) | −0.001 (2) | −0.025 (2) |
| C14 | 0.087 (3) | 0.099 (3) | 0.135 (4) | −0.030 (2) | −0.005 (2) | −0.022 (3) |
| C2—N1i | 1.323 (3) | C5—H5 | 0.9300 |
| C2—N1 | 1.323 (3) | F10A—C9 | 1.303 (4) |
| C2—C1 | 1.454 (5) | F10B—C9 | 1.300 (7) |
| C1—F1Ai | 1.3052 | N4—C10 | 1.331 (3) |
| C1—F1A | 1.3053 | N4—C12 | 1.378 (4) |
| C1—F1B | 1.3079 | N4—H4A | 0.8600 |
| C1—F1Bi | 1.3079 | C9—F10Aii | 1.304 (4) |
| C1—F1Ci | 1.3095 | C9—C10 | 1.462 (7) |
| C1—F1C | 1.3095 | C10—N4ii | 1.331 (3) |
| N1—C3 | 1.377 (4) | C12—C13 | 1.392 (5) |
| N1—H1A | 0.8600 | C12—C12ii | 1.397 (6) |
| C3—C4 | 1.380 (4) | C13—C14 | 1.372 (6) |
| C3—C3i | 1.394 (5) | C13—H13 | 0.9300 |
| C4—C5 | 1.359 (5) | C14—C14ii | 1.375 (9) |
| C4—H4 | 0.9300 | C14—H14 | 0.9300 |
| C5—C5i | 1.399 (9) | ||
| N1i—C2—N1 | 114.7 (4) | C4—C5—C5i | 121.8 (2) |
| N1i—C2—C1 | 122.6 (2) | C4—C5—H5 | 119.1 |
| N1—C2—C1 | 122.6 (2) | C5i—C5—H5 | 119.1 |
| F1A—C1—F1B | 105.6 | C10—N4—C12 | 105.1 (3) |
| F1Ai—C1—F1Bi | 105.6 | C10—N4—H4A | 127.4 |
| F1Ai—C1—F1Ci | 106.0 | C12—N4—H4A | 127.4 |
| F1Bi—C1—F1Ci | 105.4 | F10B—C9—F10A | 105.6 (4) |
| F1A—C1—F1C | 106.0 | F10B—C9—F10Aii | 105.6 (4) |
| F1B—C1—F1C | 105.4 | F10A—C9—F10Aii | 105.9 (5) |
| F1Ai—C1—C2 | 116.522 (6) | F10B—C9—C10 | 113.1 (5) |
| F1A—C1—C2 | 116.519 (5) | F10A—C9—C10 | 113.0 (3) |
| F1B—C1—C2 | 113.229 (5) | F10Aii—C9—C10 | 113.0 (3) |
| F1Bi—C1—C2 | 113.230 (5) | N4—C10—N4ii | 114.3 (4) |
| F1Ci—C1—C2 | 109.263 (5) | N4—C10—C9 | 122.9 (2) |
| F1C—C1—C2 | 109.262 (5) | N4ii—C10—C9 | 122.9 (2) |
| C2—N1—C3 | 105.0 (3) | N4—C12—C13 | 131.0 (3) |
| C2—N1—H1A | 127.5 | N4—C12—C12ii | 107.74 (16) |
| C3—N1—H1A | 127.5 | C13—C12—C12ii | 121.3 (2) |
| N1—C3—C4 | 131.0 (3) | C14—C13—C12 | 116.4 (4) |
| N1—C3—C3i | 107.64 (15) | C14—C13—H13 | 121.8 |
| C4—C3—C3i | 121.3 (2) | C12—C13—H13 | 121.8 |
| C5—C4—C3 | 116.9 (4) | C13—C14—C14ii | 122.3 (2) |
| C5—C4—H4 | 121.5 | C13—C14—H14 | 118.9 |
| C3—C4—H4 | 121.5 | C14ii—C14—H14 | 118.9 |
| N1i—C2—C1—F1Ai | −11.43 (13) | N1—C3—C4—C5 | −179.7 (3) |
| N1—C2—C1—F1Ai | 168.57 (13) | C3i—C3—C4—C5 | 0.7 (5) |
| N1i—C2—C1—F1A | 168.57 (13) | C3—C4—C5—C5i | −0.4 (7) |
| N1—C2—C1—F1A | −11.43 (13) | C12—N4—C10—N4ii | 0.2 (5) |
| N1i—C2—C1—F1B | 45.84 (13) | C12—N4—C10—C9 | 179.2 (5) |
| N1—C2—C1—F1B | −134.16 (13) | F10B—C9—C10—N4 | −89.5 (4) |
| N1i—C2—C1—F1Bi | −134.16 (13) | F10A—C9—C10—N4 | 150.6 (4) |
| N1—C2—C1—F1Bi | 45.84 (13) | F10Aii—C9—C10—N4 | 30.4 (8) |
| N1i—C2—C1—F1Ci | 108.66 (13) | F10B—C9—C10—N4ii | 89.5 (4) |
| N1—C2—C1—F1Ci | −71.34 (13) | F10A—C9—C10—N4ii | −30.4 (8) |
| N1i—C2—C1—F1C | −71.34 (13) | F10Aii—C9—C10—N4ii | −150.6 (4) |
| N1—C2—C1—F1C | 108.66 (13) | C10—N4—C12—C13 | 178.1 (4) |
| N1i—C2—N1—C3 | −0.07 (14) | C10—N4—C12—C12ii | −0.1 (3) |
| C1—C2—N1—C3 | 179.93 (14) | N4—C12—C13—C14 | −178.8 (4) |
| C2—N1—C3—C4 | −179.4 (3) | C12ii—C12—C13—C14 | −0.8 (4) |
| C2—N1—C3—C3i | 0.2 (3) | C12—C13—C14—C14ii | 0.8 (4) |
| H··· | ||||
| N1—H1 | 0.86 | 2.03 | 2.891 (3) | 173 |
| N4—H4 | 0.86 | 2.03 | 2.891 (3) | 174 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.03 | 2.891 (3) | 173 |
| N4—H4 | 0.86 | 2.03 | 2.891 (3) | 174 |