Literature DB >> 22219867

2-Trifluoro-methyl-1H-benzimidazol-3-ium perchlorate.

Ming-Liang Liu1.   

Abstract

In the title salt, C(8)H(6)F(3)N(2) (+)·ClO(4) (-), the atoms of the benzimidazole ring (including H atoms) are nearly coplanar (r.m.s. deviation of the fitted atoms = 0.0122 Å) and the triflouromethyl group lies out of this plane. The perchlorate anion adopts a distorted tetra-hedral conformation with the Cl-O bond distances ranging from 1.412 (3) to 1.439 (2) Å. The benzimidazolium cations are linked to adjacent anions by inter-molecular N-H⋯O hydrogen bonds, forming chains.

Entities:  

Year:  2011        PMID: 22219867      PMCID: PMC3247562          DOI: 10.1107/S1600536811039298

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to mol­ecular–ionic compounds, see: Yu et al. (2004 ▶); Chen et al. (2009 ▶); Ge et al. (2007 ▶).

Experimental

Crystal data

C8H6F3N2ClO4 M = 286.60 Triclinic, a = 7.6274 (15) Å b = 9.0614 (18) Å c = 9.3838 (19) Å α = 61.80 (3)° β = 81.98 (3)° γ = 75.85 (3)° V = 554.0 (3) Å3 Z = 2 Mo Kα radiation μ = 0.40 mm−1 T = 293 K 0.36 × 0.32 × 0.28 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.963, T max = 0.971 5756 measured reflections 2535 independent reflections 1980 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.140 S = 1.04 2535 reflections 163 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.34 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811039298/go2027sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811039298/go2027Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811039298/go2027Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H6F3N2+·ClO4V = 554.0 (3) Å3
Mr = 286.60Z = 2
Triclinic, P1F(000) = 288
Hall symbol: -P 1Dx = 1.718 Mg m3
a = 7.6274 (15) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.0614 (18) Åθ = 3.4–26°
c = 9.3838 (19) ŵ = 0.40 mm1
α = 61.80 (3)°T = 293 K
β = 81.98 (3)°Block, colourless
γ = 75.85 (3)°0.36 × 0.32 × 0.28 mm
Rigaku Mercury2 diffractometer2535 independent reflections
Radiation source: fine-focus sealed tube1980 reflections with I > 2σ(I)
graphiteRint = 0.026
CCD_Profile_fitting scansθmax = 27.5°, θmin = 3.4°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)h = −9→9
Tmin = 0.963, Tmax = 0.971k = −11→11
5756 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0636P)2 + 0.384P] where P = (Fo2 + 2Fc2)/3
2535 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.49 e Å3
0 restraintsΔρmin = −0.34 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.3287 (4)0.0295 (2)0.1487 (2)0.0793 (7)
F20.4027 (3)0.2471 (3)−0.0564 (2)0.0697 (6)
F30.1269 (3)0.2305 (3)−0.0094 (3)0.0791 (7)
N10.2447 (3)0.4517 (3)0.1052 (3)0.0430 (5)
H1A0.23750.52490.00450.052*
N20.2695 (3)0.2099 (3)0.3226 (2)0.0379 (5)
H2A0.28020.10200.38520.046*
C10.2548 (3)0.3343 (3)0.3721 (3)0.0374 (5)
C20.2378 (4)0.4892 (3)0.2328 (3)0.0395 (6)
C30.2214 (4)0.6432 (4)0.2384 (4)0.0534 (7)
H30.20900.74760.14530.064*
C40.2248 (5)0.6313 (4)0.3883 (4)0.0603 (8)
H40.21480.73080.39760.072*
C50.2429 (5)0.4748 (4)0.5284 (4)0.0593 (8)
H50.24480.47370.62770.071*
C60.2577 (4)0.3237 (4)0.5248 (3)0.0510 (7)
H60.26910.21990.61850.061*
C70.2639 (3)0.2848 (3)0.1636 (3)0.0376 (5)
C80.2812 (4)0.1957 (4)0.0614 (3)0.0483 (7)
Cl10.21788 (9)0.83165 (8)−0.28977 (7)0.0426 (2)
O10.3244 (3)0.8661 (3)−0.4364 (2)0.0571 (6)
O20.1589 (4)0.6730 (3)−0.2310 (3)0.0692 (7)
O30.3197 (4)0.8220 (5)−0.1699 (3)0.0965 (10)
O40.0612 (4)0.9641 (3)−0.3218 (3)0.0806 (8)
U11U22U33U12U13U23
F10.131 (2)0.0469 (11)0.0617 (12)−0.0124 (11)−0.0017 (12)−0.0287 (9)
F20.0740 (13)0.0940 (15)0.0507 (10)−0.0281 (11)0.0205 (9)−0.0414 (10)
F30.0649 (12)0.1233 (19)0.0777 (14)−0.0174 (12)−0.0104 (10)−0.0676 (14)
N10.0551 (13)0.0378 (11)0.0265 (10)−0.0127 (10)0.0002 (9)−0.0058 (9)
N20.0466 (12)0.0319 (10)0.0273 (10)−0.0068 (9)−0.0029 (9)−0.0071 (8)
C10.0396 (13)0.0364 (13)0.0318 (12)−0.0081 (10)−0.0015 (10)−0.0118 (10)
C20.0442 (14)0.0383 (13)0.0316 (12)−0.0115 (11)−0.0005 (10)−0.0112 (10)
C30.068 (2)0.0385 (14)0.0502 (17)−0.0166 (14)−0.0008 (14)−0.0149 (13)
C40.076 (2)0.0521 (18)0.065 (2)−0.0212 (16)0.0012 (17)−0.0337 (16)
C50.076 (2)0.068 (2)0.0453 (16)−0.0156 (17)−0.0024 (15)−0.0339 (16)
C60.0646 (18)0.0515 (16)0.0323 (13)−0.0109 (14)−0.0049 (12)−0.0149 (12)
C70.0389 (13)0.0394 (13)0.0291 (12)−0.0098 (10)0.0010 (10)−0.0111 (10)
C80.0560 (17)0.0536 (16)0.0374 (14)−0.0143 (13)0.0025 (12)−0.0219 (13)
Cl10.0500 (4)0.0392 (3)0.0302 (3)−0.0106 (3)−0.0028 (2)−0.0079 (2)
O10.0636 (13)0.0512 (12)0.0351 (10)−0.0059 (10)0.0047 (9)−0.0067 (9)
O20.0965 (18)0.0503 (13)0.0569 (14)−0.0310 (12)0.0130 (13)−0.0178 (11)
O30.091 (2)0.158 (3)0.0524 (14)−0.057 (2)−0.0063 (14)−0.0410 (17)
O40.0728 (16)0.0586 (15)0.0820 (18)0.0036 (12)0.0105 (14)−0.0207 (13)
F1—C81.312 (4)C3—C41.363 (4)
F2—C81.317 (3)C3—H30.9300
F3—C81.328 (4)C4—C51.397 (5)
N1—C71.318 (3)C4—H40.9300
N1—C21.382 (3)C5—C61.362 (4)
N1—H1A0.86C5—H50.9300
N2—C71.318 (3)C6—H60.9300
N2—C11.385 (3)C7—C81.495 (4)
N2—H2A0.86Cl1—O31.412 (3)
C1—C21.385 (3)Cl1—O41.420 (3)
C1—C61.393 (4)Cl1—O11.434 (2)
C2—C31.395 (4)Cl1—O21.439 (2)
C7—N1—C2108.6 (2)C4—C5—H5118.8
C7—N1—H1A125.7C5—C6—C1115.8 (3)
C2—N1—H1A125.8C5—C6—H6122.1
C7—N2—C1108.5 (2)C1—C6—H6122.1
C7—N2—H2A125.8N2—C7—N1110.3 (2)
C1—N2—H2A125.7N2—C7—C8125.6 (2)
N2—C1—C2106.3 (2)N1—C7—C8124.1 (2)
N2—C1—C6131.7 (2)F1—C8—F2108.7 (3)
C2—C1—C6121.9 (3)F1—C8—F3108.6 (3)
N1—C2—C1106.3 (2)F2—C8—F3106.2 (2)
N1—C2—C3132.0 (2)F1—C8—C7110.7 (2)
C1—C2—C3121.6 (3)F2—C8—C7111.0 (2)
C4—C3—C2116.0 (3)F3—C8—C7111.4 (2)
C4—C3—H3122.0O3—Cl1—O4110.0 (2)
C2—C3—H3122.0O3—Cl1—O1110.25 (16)
C3—C4—C5122.2 (3)O4—Cl1—O1109.06 (15)
C3—C4—H4118.9O3—Cl1—O2109.08 (18)
C5—C4—H4118.9O4—Cl1—O2107.71 (17)
C6—C5—C4122.4 (3)O1—Cl1—O2110.65 (15)
C6—C5—H5118.8
C7—N2—C1—C20.7 (3)N2—C1—C6—C5178.7 (3)
C7—N2—C1—C6−178.2 (3)C2—C1—C6—C50.0 (4)
C7—N1—C2—C10.2 (3)C1—N2—C7—N1−0.6 (3)
C7—N1—C2—C3179.0 (3)C1—N2—C7—C8178.0 (2)
N2—C1—C2—N1−0.5 (3)C2—N1—C7—N20.2 (3)
C6—C1—C2—N1178.5 (3)C2—N1—C7—C8−178.4 (2)
N2—C1—C2—C3−179.4 (2)N2—C7—C8—F1−9.0 (4)
C6—C1—C2—C3−0.5 (4)N1—C7—C8—F1169.4 (3)
N1—C2—C3—C4−178.0 (3)N2—C7—C8—F2−129.8 (3)
C1—C2—C3—C40.6 (4)N1—C7—C8—F248.6 (4)
C2—C3—C4—C5−0.2 (5)N2—C7—C8—F3112.1 (3)
C3—C4—C5—C6−0.2 (6)N1—C7—C8—F3−69.5 (3)
C4—C5—C6—C10.3 (5)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O20.862.052.891 (3)164
N1—H1A···O30.862.593.254 (4)135
N2—H2A···O1i0.861.982.822 (3)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O20.862.052.891 (3)164
N1—H1A⋯O30.862.593.254 (4)135
N2—H2A⋯O1i0.861.982.822 (3)167

Symmetry code: (i) .

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1.  2-Trifluoro-methyl-1H-benzimidazole.

Authors:  Ming-Liang Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-25

2.  2-Trifluoro-methyl-1H-benzimidazol-3-ium hydrogen sulfate.

Authors:  Ming-Liang Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-30

3.  Bis(2-trifluoro-methyl-1H-benzimidazol-3-ium) naphthalene-1,5-disulfonate.

Authors:  Ming-Liang Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-11

4.  5-Nitro-2-trifluoro-methyl-1H-benzimidazole monohydrate.

Authors:  Ming-Liang Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-21

5.  Bis(2-trifluoro-methyl-1H-benzimidazol-3-ium) tetra-chloridomercurate dihydrate.

Authors:  Ming-Liang Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-02

6.  2-Trifluoro-methyl-1H-benzimidazol-3-ium nitrate.

Authors:  Ming-Liang Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-10

7.  2-Trifluoro-methyl-1H-benzimidazol-3-ium tetra-fluoro-borate-2-trifluoro-methyl-1H-benzimidazole-water (1/1/1).

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