Literature DB >> 22589886

2-Trifluoro-methyl-1H-benzimidazol-3-ium nitrate.

Ming-Liang Liu1.   

Abstract

Ihe title salt, C(8)H(6)F(3)N(2) (+)·NO(3) (-), the F atoms of the triflouromethyl group are n class="Disease">disordered over two sets of sites in a 0.58 (2):0.42 (2) ratio. In the crystal, N-H⋯O hydrogen bonds link the cations and anions into chains running parallel to the b axis. There is π-π stacking between symmetry-related benzene rings with a centroid-centroid distance of 3.949 (3) Å. The crystal studied was a non-merohedral twin, with a 19% minor component.

Entities:  

Year:  2012        PMID: 22589886      PMCID: PMC3343977          DOI: 10.1107/S1600536812009415

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was synthesized as part of a search for potential ferroelectric compouns. For background to ferroelectric complexes, see: Fu et al. (2011 ▶); Zhang et al. (2010 ▶). For related structures, see: Liu (2011a ▶,b ▶, 2012 ▶). For the separation of the non-merohedrally twinned diffraction data, see: Spek (2009 ▶).

Experimental

Crystal data

C8H6F3N2NO3 M = 249.16 Triclinic, a = 7.2745 (15) Å b = 9.0962 (18) Å c = 9.4502 (19) Å α = 61.53 (3)° β = 71.18 (3)° γ = 82.41 (3)° V = 520.1 (3) Å3 Z = 2 Mo Kα radiation μ = 0.16 mm−1 T = 293 K 0.20 × 0.20 × 0.20 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.969, T max = 0.969 1828 measured reflections 1828 independent reflections 910 reflections with I > 2σ(I)

Refinement

R[F 2 > 2σ(F 2)] = 0.072 wR(F 2) = 0.227 S = 1.01 1828 reflections 183 parameters H-atom parameters constrained Δρmax = 0.23 e Å−3 Δρmin = −0.27 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009) ▶; software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812009415/go2046sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812009415/go2046Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812009415/go2046Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H6F3N2+·NO3V = 520.1 (3) Å3
Mr = 249.16Z = 2
Triclinic, P1F(000) = 252
Hall symbol: -P 1Dx = 1.591 Mg m3
a = 7.2745 (15) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.0962 (18) Åθ = 3.3–25.0°
c = 9.4502 (19) ŵ = 0.16 mm1
α = 61.53 (3)°T = 293 K
β = 71.18 (3)°Block, colourless
γ = 82.41 (3)°0.20 × 0.20 × 0.20 mm
Rigaku SCXmini diffractometer1828 independent reflections
Radiation source: fine-focus sealed tube910 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.000
CCD_Profile_fitting scansθmax = 25.0°, θmin = 3.3°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)h = −8→8
Tmin = 0.969, Tmax = 0.969k = −10→10
1828 measured reflectionsl = −9→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.072Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.227H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.1061P)2] where P = (Fo2 + 2Fc2)/3
1828 reflections(Δ/σ)max < 0.001
183 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N20.2477 (5)0.3645 (4)0.4631 (4)0.0551 (10)
H2A0.24790.43610.49810.066*
O20.2968 (6)0.7956 (4)0.5882 (4)0.0824 (12)
O10.2843 (6)0.5588 (4)0.5979 (5)0.0849 (12)
N30.2467 (5)0.1269 (4)0.4602 (4)0.0541 (10)
H3A0.24700.02090.49320.065*
N10.2547 (6)0.7095 (5)0.5303 (5)0.0586 (11)
O30.1883 (5)0.7778 (5)0.4106 (5)0.0839 (12)
F10.343 (3)−0.0238 (12)0.7647 (14)0.104 (7)0.58 (2)
F20.331 (4)0.1984 (11)0.7662 (17)0.108 (7)0.58 (2)
F30.0708 (17)0.077 (4)0.8311 (11)0.166 (11)0.58 (2)
F1'0.396 (2)0.077 (7)0.7605 (16)0.187 (17)0.42 (2)
F2'0.144 (5)0.1946 (18)0.8128 (15)0.110 (8)0.42 (2)
F3'0.132 (4)−0.0270 (19)0.8115 (17)0.107 (8)0.42 (2)
C20.2467 (6)0.2011 (5)0.5524 (6)0.0531 (12)
C30.2462 (7)0.2518 (5)0.3017 (5)0.0523 (12)
C80.2483 (6)0.4019 (5)0.3024 (5)0.0520 (12)
C70.2462 (7)0.5527 (6)0.1610 (6)0.0681 (14)
H70.24620.65450.16190.082*
C50.2441 (8)0.3936 (8)0.0199 (6)0.0781 (16)
H50.24470.3947−0.07910.094*
C60.2442 (8)0.5454 (7)0.0225 (7)0.0778 (16)
H60.24280.6445−0.07410.093*
C10.2396 (12)0.1092 (7)0.7352 (7)0.0659 (14)
C40.2431 (8)0.2420 (7)0.1588 (6)0.0698 (15)
H40.24050.14050.15800.084*
U11U22U33U12U13U23
N20.073 (3)0.041 (2)0.063 (2)0.0001 (18)−0.026 (2)−0.029 (2)
O20.130 (3)0.050 (2)0.090 (3)0.009 (2)−0.050 (2)−0.041 (2)
O10.140 (3)0.042 (2)0.093 (3)0.010 (2)−0.050 (2)−0.0389 (19)
N30.071 (3)0.038 (2)0.060 (2)−0.0001 (17)−0.019 (2)−0.0276 (19)
N10.071 (3)0.051 (3)0.060 (3)−0.005 (2)−0.015 (2)−0.031 (2)
O30.097 (3)0.085 (3)0.081 (3)0.003 (2)−0.045 (2)−0.036 (2)
F10.20 (2)0.049 (5)0.082 (5)0.045 (7)−0.079 (9)−0.028 (4)
F20.21 (2)0.068 (5)0.084 (6)−0.002 (6)−0.088 (10)−0.037 (4)
F30.094 (7)0.26 (3)0.055 (5)−0.013 (14)0.003 (5)−0.021 (12)
F1'0.094 (11)0.33 (4)0.063 (7)0.00 (2)−0.033 (7)−0.02 (2)
F2'0.19 (3)0.076 (8)0.065 (7)0.019 (9)−0.025 (10)−0.044 (6)
F3'0.18 (2)0.066 (7)0.063 (7)−0.045 (9)−0.021 (9)−0.015 (5)
C20.063 (3)0.041 (3)0.060 (3)0.003 (2)−0.022 (2)−0.025 (2)
C30.065 (3)0.043 (3)0.054 (3)0.003 (2)−0.024 (2)−0.023 (2)
C80.058 (3)0.048 (3)0.055 (3)0.001 (2)−0.022 (2)−0.025 (2)
C70.079 (4)0.052 (3)0.071 (3)0.000 (2)−0.025 (3)−0.024 (3)
C50.087 (4)0.093 (4)0.051 (3)0.005 (3)−0.026 (3)−0.028 (3)
C60.104 (5)0.059 (3)0.066 (3)0.000 (3)−0.040 (3)−0.016 (3)
C10.093 (5)0.053 (4)0.059 (4)0.003 (3)−0.028 (4)−0.029 (3)
C40.082 (4)0.075 (4)0.068 (3)0.002 (3)−0.025 (3)−0.044 (3)
N2—C21.314 (5)F2'—C11.303 (13)
N2—C81.388 (5)F3'—C11.309 (15)
N2—H2A0.8600C2—C11.504 (6)
O2—N11.260 (4)C3—C81.371 (6)
O1—N11.228 (5)C3—C41.402 (6)
N3—C21.333 (5)C8—C71.388 (6)
N3—C31.384 (5)C7—C61.346 (7)
N3—H3A0.8600C7—H70.9300
N1—O31.226 (5)C5—C41.377 (7)
F1—C11.295 (12)C5—C61.393 (8)
F2—C11.297 (12)C5—H50.9300
F3—C11.240 (10)C6—H60.9300
F1'—C11.206 (14)C4—H40.9300
C2—N2—C8108.3 (3)C5—C6—H6119.1
C2—N2—H2A125.9F1'—C1—F3132.5 (9)
C8—N2—H2A125.9F1'—C1—F148 (2)
C2—N3—C3107.4 (3)F3—C1—F1112.0 (13)
C2—N3—H3A126.3F1'—C1—F255 (2)
C3—N3—H3A126.3F3—C1—F2110.2 (11)
O3—N1—O1123.2 (4)F1—C1—F2102.3 (10)
O3—N1—O2119.6 (4)F1'—C1—F2'108.7 (16)
O1—N1—O2117.2 (4)F3—C1—F2'54.6 (9)
N2—C2—N3110.6 (4)F1—C1—F2'139.1 (9)
N2—C2—C1125.0 (4)F2—C1—F2'59.5 (9)
N3—C2—C1124.3 (4)F1'—C1—F3'110.3 (19)
C8—C3—N3107.3 (4)F3—C1—F3'49.3 (11)
C8—C3—C4122.1 (4)F1—C1—F3'67.9 (9)
N3—C3—C4130.6 (4)F2—C1—F3'141.3 (8)
C3—C8—N2106.5 (4)F2'—C1—F3'102.4 (12)
C3—C8—C7121.4 (4)F1'—C1—C2115.1 (8)
N2—C8—C7132.1 (4)F3—C1—C2112.3 (7)
C6—C7—C8117.2 (5)F1—C1—C2110.6 (6)
C6—C7—H7121.4F2—C1—C2108.9 (6)
C8—C7—H7121.4F2'—C1—C2110.0 (7)
C4—C5—C6122.3 (5)F3'—C1—C2109.6 (7)
C4—C5—H5118.9C5—C4—C3115.1 (5)
C6—C5—H5118.9C5—C4—H4122.4
C7—C6—C5121.8 (5)C3—C4—H4122.4
C7—C6—H6119.1
C8—N2—C2—N30.0 (5)N2—C2—C1—F1'−92 (3)
C8—N2—C2—C1−178.0 (5)N3—C2—C1—F1'90 (3)
C3—N3—C2—N2−0.5 (5)N2—C2—C1—F390 (2)
C3—N3—C2—C1177.6 (5)N3—C2—C1—F3−88 (2)
C2—N3—C3—C80.7 (5)N2—C2—C1—F1−144.3 (11)
C2—N3—C3—C4−178.9 (5)N3—C2—C1—F138.0 (13)
N3—C3—C8—N2−0.7 (5)N2—C2—C1—F2−32.6 (16)
C4—C3—C8—N2179.0 (4)N3—C2—C1—F2149.7 (13)
N3—C3—C8—C7−179.3 (4)N2—C2—C1—F2'31 (2)
C4—C3—C8—C70.4 (7)N3—C2—C1—F2'−146.9 (18)
C2—N2—C8—C30.4 (5)N2—C2—C1—F3'142.8 (16)
C2—N2—C8—C7178.8 (5)N3—C2—C1—F3'−35.0 (17)
C3—C8—C7—C6−0.7 (8)C6—C5—C4—C3−1.2 (8)
N2—C8—C7—C6−178.8 (5)C8—C3—C4—C50.5 (7)
C8—C7—C6—C50.0 (8)N3—C3—C4—C5−179.8 (5)
C4—C5—C6—C71.0 (9)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O10.861.862.703 (5)168
N3—H3A···O2i0.861.842.682 (5)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O10.861.862.703 (5)168
N3—H3A⋯O2i0.861.842.682 (5)165

Symmetry code: (i) .

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