Literature DB >> 22199883

A new polymorph of 2,6-dimeth-oxy-benzoic acid.

Gustavo Portalone1.   

Abstract

A new crystalline form of 2,6-dimeth-oxy-benzoic acid, C(9)H(10)O(4), crystallizing in a tetra-gonal unit cell has been identified during screening for co-crystals. The asymmetric unit comprises a non-planar independent mol-ecule with a synplanar conformation of the carb-oxy group. The sterically bulky o-meth-oxy substituents force the carb-oxy group to be twisted away from the plane of the benzene ring by 65.72 (15)°. The carb-oxy group is disordered over two sites about the C-C bond [as indicated by the almost equal C-O distances of 1.254 (3) and 1.250 (3) Å], the occupancies of the disordered carboxym H atoms being 0.53 (5) and 0.47 (5). In the known ortho-rhom-bic form reported by Swaminathan et al. [Acta Cryst. (1976), B32, 1897-1900], due to the anti-planar conformation adopted by the OH group, the mol-ecular components are associated in the crystal in chains stabilized by linear O-H⋯O hydrogen bonds. However, in the new tetra-gonal polymorph, mol-ecules form dimeric units via pairs of O-H⋯O hydrogen bonds between the carb-oxy groups.

Entities:  

Year:  2011        PMID: 22199883      PMCID: PMC3239035          DOI: 10.1107/S1600536811049075

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the ortho­rhom­bic polymorph of 2,6-dimeth­oxy­benzoic acid, see: Swaminathan et al. (1976 ▶); Bryan & White (1982 ▶); Portalone (2009 ▶). For mol­ecular packing modes of carb­oxy­lic acids, see: Leiserowitz (1976 ▶); Kanters et al. (1991 ▶); Moorthy et al. (2002 ▶). For analysis of benzene ring deformations induced by substitution, see: Schultz et al. (1993 ▶); Portalone et al. (1998 ▶); For computation of ring patterns formed by hydrogen bonds in crystal structures, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶); Motherwell et al. (1999 ▶).

Experimental

Crystal data

C9H10O4 M = 182.17 Tetragonal, a = 8.1423 (3) Å c = 27.6814 (18) Å V = 1835.20 (15) Å3 Z = 8 Mo Kα radiation μ = 0.11 mm−1 T = 298 K 0.30 × 0.25 × 0.21 mm

Data collection

Oxford Diffraction Xcalibur S CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006 ▶). T min = 0.878, T max = 0.999 11616 measured reflections 1653 independent reflections 1332 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.147 S = 1.19 1653 reflections 133 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.17 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811049075/xu5390sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811049075/xu5390Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811049075/xu5390Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H10O4Dx = 1.319 Mg m3
Mr = 182.17Mo Kα radiation, λ = 0.71069 Å
Tetragonal, P41212Cell parameters from 4278 reflections
Hall symbol: P 4abw 2nwθ = 2.9–32.3°
a = 8.1423 (3) ŵ = 0.11 mm1
c = 27.6814 (18) ÅT = 298 K
V = 1835.20 (15) Å3Tablets, colourless
Z = 80.30 × 0.25 × 0.21 mm
F(000) = 768
Oxford Diffraction Xcalibur S CCD diffractometer1653 independent reflections
Radiation source: Enhance (Mo) X-ray source1332 reflections with I > 2σ(I)
graphiteRint = 0.042
Detector resolution: 16.0696 pixels mm-1θmax = 30.0°, θmin = 2.9°
ω and φ scansh = −11→10
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006).k = −8→11
Tmin = 0.878, Tmax = 0.999l = −38→38
11616 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.062H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.147w = 1/[σ2(Fo2) + (0.0659P)2 + 0.2634P] where P = (Fo2 + 2Fc2)/3
S = 1.19(Δ/σ)max < 0.001
1653 reflectionsΔρmax = 0.18 e Å3
133 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.017 (3)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.7090 (3)0.1661 (3)0.71019 (8)0.0558 (6)
H10.733 (5)0.209 (5)0.7340 (15)0.023 (14)*0.53 (5)
O20.5271 (3)0.3665 (2)0.70822 (7)0.0508 (6)
H20.566 (7)0.393 (7)0.7333 (17)0.031 (18)*0.47 (5)
O30.7742 (3)0.2435 (3)0.60828 (6)0.0652 (7)
O40.2838 (3)0.1176 (3)0.68526 (7)0.0618 (6)
C10.5250 (3)0.1775 (3)0.64409 (7)0.0362 (6)
C20.6221 (4)0.1801 (3)0.60276 (8)0.0456 (7)
C30.5579 (5)0.1225 (4)0.55922 (9)0.0644 (9)
H30.62300.12450.52990.077*
C40.3993 (6)0.0628 (5)0.55889 (11)0.0749 (11)
H40.35470.02200.52870.090*
C50.3025 (5)0.0583 (4)0.59895 (12)0.0653 (9)
H50.19170.01470.59720.078*
C60.3652 (4)0.1176 (3)0.64256 (9)0.0447 (7)
C70.5920 (3)0.2410 (3)0.69057 (7)0.0329 (5)
C80.8729 (5)0.2678 (4)0.56701 (12)0.0722 (11)
H8A0.889 (3)0.164 (2)0.5507 (7)0.108*
H8B0.978 (3)0.312 (3)0.5767 (3)0.108*
H8C0.819 (2)0.344 (3)0.5453 (7)0.108*
C90.1147 (5)0.0710 (6)0.68556 (15)0.0917 (14)
H9A0.0518 (15)0.147 (3)0.6655 (11)0.138*
H9B0.0730 (16)0.074 (4)0.7186 (7)0.138*
H9C0.1036 (7)−0.040 (3)0.6728 (11)0.138*
U11U22U33U12U13U23
O10.0679 (14)0.0562 (13)0.0432 (9)0.0162 (11)−0.0267 (10)−0.0181 (9)
O20.0616 (13)0.0497 (12)0.0412 (9)0.0118 (10)−0.0217 (10)−0.0159 (9)
O30.0665 (15)0.0862 (17)0.0428 (10)−0.0139 (13)0.0104 (10)−0.0077 (11)
O40.0504 (13)0.0836 (16)0.0513 (10)−0.0242 (12)−0.0085 (10)0.0041 (11)
C10.0506 (15)0.0330 (12)0.0251 (9)−0.0008 (11)−0.0133 (10)−0.0031 (9)
C20.0618 (18)0.0448 (15)0.0302 (10)0.0038 (14)−0.0069 (12)−0.0045 (11)
C30.094 (3)0.069 (2)0.0306 (12)0.014 (2)−0.0103 (15)−0.0175 (14)
C40.095 (3)0.083 (2)0.0461 (16)0.007 (2)−0.0347 (18)−0.0298 (17)
C50.068 (2)0.064 (2)0.0636 (17)−0.0076 (16)−0.0356 (17)−0.0177 (17)
C60.0530 (17)0.0412 (14)0.0400 (12)−0.0028 (13)−0.0173 (12)−0.0035 (11)
C70.0373 (13)0.0370 (13)0.0242 (8)−0.0047 (10)−0.0050 (9)−0.0023 (9)
C80.095 (3)0.057 (2)0.0641 (18)−0.0006 (19)0.0319 (19)−0.0022 (17)
C90.063 (3)0.123 (4)0.089 (3)−0.034 (2)−0.007 (2)0.003 (3)
O1—C71.254 (3)C3—C41.380 (6)
O1—H10.77 (4)C3—H30.9700
O2—C71.250 (3)C4—C51.361 (5)
O2—H20.79 (5)C4—H40.9700
O3—C21.350 (4)C5—C61.397 (4)
O3—C81.411 (4)C5—H50.9700
O4—C61.355 (4)C8—H8A0.9684
O4—C91.428 (5)C8—H8B0.9684
C1—C21.391 (4)C8—H8C0.9684
C1—C61.391 (4)C9—H9A0.9766
C1—C71.490 (3)C9—H9B0.9766
C2—C31.395 (4)C9—H9C0.9766
C7—O1—H1110 (3)O4—C6—C1115.5 (2)
C7—O2—H2113 (4)O4—C6—C5125.1 (3)
C2—O3—C8119.0 (2)C1—C6—C5119.3 (3)
C6—O4—C9118.5 (3)O2—C7—O1123.3 (2)
C2—C1—C6120.8 (2)O2—C7—C1117.8 (2)
C2—C1—C7119.8 (2)O1—C7—C1118.9 (2)
C6—C1—C7119.4 (2)O3—C8—H8A109.5
O3—C2—C1115.7 (2)O3—C8—H8B109.5
O3—C2—C3124.8 (3)H8A—C8—H8B109.5
C1—C2—C3119.5 (3)O3—C8—H8C109.5
C4—C3—C2118.4 (3)H8A—C8—H8C109.5
C4—C3—H3120.8H8B—C8—H8C109.5
C2—C3—H3120.8O4—C9—H9A109.5
C5—C4—C3123.1 (3)O4—C9—H9B109.5
C5—C4—H4118.5H9A—C9—H9B109.5
C3—C4—H4118.5O4—C9—H9C109.5
C4—C5—C6118.9 (3)H9A—C9—H9C109.5
C4—C5—H5120.6H9B—C9—H9C109.5
C6—C5—H5120.6
C8—O3—C2—C1−172.8 (3)C9—O4—C6—C5−7.4 (5)
C8—O3—C2—C35.7 (5)C2—C1—C6—O4178.5 (3)
C6—C1—C2—O3178.9 (2)C7—C1—C6—O4−2.0 (4)
C7—C1—C2—O3−0.6 (4)C2—C1—C6—C50.4 (4)
C6—C1—C2—C30.3 (4)C7—C1—C6—C5179.9 (3)
C7—C1—C2—C3−179.2 (3)C4—C5—C6—O4−178.6 (3)
O3—C2—C3—C4−179.2 (3)C4—C5—C6—C1−0.8 (5)
C1—C2—C3—C4−0.8 (5)C2—C1—C7—O2114.4 (3)
C2—C3—C4—C50.4 (6)C6—C1—C7—O2−65.0 (3)
C3—C4—C5—C60.3 (6)C2—C1—C7—O1−66.0 (3)
C9—O4—C6—C1174.7 (3)C6—C1—C7—O1114.5 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···O1i0.77 (4)1.87 (4)2.632 (4)168 (5)
O2—H2···O2i0.79 (5)1.83 (5)2.618 (4)173 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O1i0.77 (4)1.87 (4)2.632 (4)168 (5)
O2—H2⋯O2i0.79 (5)1.83 (5)2.618 (4)173 (5)

Symmetry code: (i) .

  5 in total

1.  Visualization and characterization of non-covalent networks in molecular crystals: automated assignment of graph-set descriptors for asymmetric molecules.

Authors: 
Journal:  Acta Crystallogr B       Date:  1999-12-01

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  Helical self-assembly of substituted benzoic acids: influence of weaker X...X and C-H...X interactions.

Authors:  J Narasimha Moorthy; R Natarajan; Prasenjit Mal; P Venugopalan
Journal:  J Am Chem Soc       Date:  2002-06-12       Impact factor: 15.419

5.  Redetermination of 2,6-dimethoxy-benzoic acid.

Authors:  Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-17
  5 in total
  7 in total

1.  4-Meth-oxy-benzamidinium 2,6-dimeth-oxy-benzoate.

Authors:  Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-07

2.  4-Meth-oxy-benzamidinium acetate.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-03

3.  4-Meth-oxy-benzamidinium nitrate.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-10

4.  4-Meth-oxy-benzamidinium hydrogen oxalate monohydrate.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-14

5.  4-Meth-oxy-benzamidinium hydrogen sulfate.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-31

6.  4-Meth-oxy-benzamidinium chloride monohydrate.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06

7.  Benzamidinium 2-meth-oxy-benzoate.

Authors:  Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-19
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.