Literature DB >> 23284542

4-Meth-oxy-benzamidinium hydrogen sulfate.

Simona Irrera1, Gustavo Portalone.   

Abstract

The title salt, C(8)H(11)N(2)O(+)·HSO(4) (-), has been synthesized by the reaction between 4-meth-oxy-benzamidine and sulfuric acid. The asymmetric unit comprises a nonplanar 4-meth-oxy-benzamidinium cation and one hydrogen sulfate anion. In the cation, the amidinium group has two identical C-N bonds [1.306 (2) and 1.308 (2) Å], and its plane forms a dihedral angle of 6.49 (8)° with the mean plane of the benzene ring. The ionic components are associated in the crystal via N-H(+)⋯O(-), resulting in chains running approximately along the b-axis direction whicg are interconnected by O-H⋯O(-) hydrogen bonds.

Entities:  

Year:  2012        PMID: 23284542      PMCID: PMC3515322          DOI: 10.1107/S1600536812044327

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and pharmacological relevance of benzamidine, see: Powers & Harper (1999 ▶); Grzesiak et al. (2000 ▶). For structural analysis of proton-transfer adducts containing mol­ecules of biological inter­est, see: Portalone (2011a ▶); Portalone & Irrera (2011 ▶). For the supra­molecular association in proton-transfer adducts containing benzamidinium cations, see: Portalone (2010 ▶, 2011b ▶, 2012 ▶); Irrera & Portalone (2012 ▶); Irrera et al. (2012 ▶). For hydrogen-bond motifs, see Bernstein et al. (1995 ▶).

Experimental

Crystal data

C8H11N2O+·HSO4 M = 248.26 Monoclinic, a = 14.2608 (14) Å b = 10.1844 (9) Å c = 7.5723 (9) Å β = 94.206 (10)° V = 1096.83 (19) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 298 K 0.31 × 0.25 × 0.15 mm

Data collection

Oxford Diffraction Xcalibur S CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006 ▶) T min = 0.912, T max = 0.956 16529 measured reflections 2626 independent reflections 2133 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.114 S = 1.04 2626 reflections 167 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.34 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812044327/rz5020sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812044327/rz5020Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H11N2O+·HSO4F(000) = 520
Mr = 248.26Dx = 1.503 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71069 Å
Hall symbol: -P 2ybcCell parameters from 4647 reflections
a = 14.2608 (14) Åθ = 2.9–29.7°
b = 10.1844 (9) ŵ = 0.30 mm1
c = 7.5723 (9) ÅT = 298 K
β = 94.206 (10)°Tablets, colourless
V = 1096.83 (19) Å30.31 × 0.25 × 0.15 mm
Z = 4
Oxford Diffraction Xcalibur S CCD diffractometer2626 independent reflections
Radiation source: Enhance (Mo) X-ray Source2133 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.036
Detector resolution: 16.0696 pixels mm-1θmax = 28.0°, θmin = 2.9°
ω and φ scansh = −18→18
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006)k = −13→13
Tmin = 0.912, Tmax = 0.956l = −9→9
16529 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0582P)2 + 0.2957P] where P = (Fo2 + 2Fc2)/3
2626 reflections(Δ/σ)max < 0.001
167 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.34 e Å3
Experimental. Absorption correction: [CrysAlis RED (Oxford Diffraction, 2006); empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm]
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1−0.16129 (3)0.16203 (4)0.84884 (6)0.03448 (15)
O2−0.20315 (10)0.11649 (13)1.00664 (17)0.0514 (4)
O3−0.24735 (9)0.20809 (15)0.7284 (2)0.0498 (4)
H3A−0.2287 (18)0.259 (3)0.662 (4)0.064 (8)*
O4−0.09972 (9)0.27365 (12)0.87891 (18)0.0467 (3)
O5−0.11706 (9)0.05608 (12)0.75864 (19)0.0485 (3)
O10.49301 (10)0.19362 (16)0.4667 (3)0.0684 (5)
N10.07593 (12)0.28008 (15)0.6992 (3)0.0452 (4)
H1A0.0189 (18)0.280 (2)0.730 (3)0.053 (6)*
H1B0.1027 (17)0.354 (2)0.693 (3)0.061 (7)*
N20.07598 (14)0.06125 (17)0.6593 (3)0.0595 (5)
H2A0.0212 (18)0.058 (2)0.692 (3)0.057 (7)*
H2B0.107 (2)−0.009 (3)0.647 (4)0.087 (9)*
C10.21780 (12)0.18063 (15)0.6067 (2)0.0346 (4)
C20.26115 (13)0.30028 (17)0.5855 (3)0.0465 (5)
H20.22750.37700.60200.056*
C30.35275 (14)0.30917 (18)0.5407 (3)0.0497 (5)
H30.38060.39100.52880.060*
C40.40279 (13)0.19663 (19)0.5136 (3)0.0465 (5)
C50.36028 (15)0.0754 (2)0.5315 (3)0.0595 (6)
H50.3937−0.00100.51230.071*
C60.26906 (14)0.06751 (18)0.5775 (3)0.0493 (5)
H60.2413−0.01430.58920.059*
C70.12029 (12)0.17365 (15)0.6575 (2)0.0365 (4)
C80.54205 (16)0.3152 (3)0.4575 (4)0.0749 (8)
H8A0.5094 (10)0.3716 (13)0.369 (2)0.112*
H8B0.6058 (12)0.2988 (4)0.425 (3)0.112*
H8C0.5445 (13)0.3583 (13)0.573 (2)0.112*
U11U22U33U12U13U23
S10.0360 (3)0.0244 (2)0.0440 (3)−0.00176 (15)0.00969 (18)−0.00018 (16)
O20.0718 (9)0.0368 (7)0.0477 (8)−0.0093 (6)0.0198 (7)0.0026 (6)
O30.0352 (7)0.0531 (8)0.0616 (9)−0.0021 (6)0.0082 (6)0.0112 (7)
O40.0456 (7)0.0321 (7)0.0627 (9)−0.0101 (5)0.0068 (6)−0.0029 (6)
O50.0488 (7)0.0302 (6)0.0688 (9)0.0022 (5)0.0193 (6)−0.0041 (6)
O10.0351 (8)0.0586 (9)0.1145 (14)0.0038 (7)0.0259 (8)−0.0054 (9)
N10.0333 (8)0.0306 (8)0.0735 (12)−0.0025 (6)0.0154 (8)−0.0090 (7)
N20.0389 (10)0.0285 (8)0.1137 (17)−0.0032 (7)0.0232 (10)−0.0039 (9)
C10.0304 (8)0.0282 (8)0.0454 (9)0.0011 (6)0.0031 (7)−0.0015 (7)
C20.0367 (9)0.0277 (8)0.0763 (14)0.0020 (7)0.0133 (9)−0.0030 (8)
C30.0395 (10)0.0335 (9)0.0775 (14)−0.0050 (8)0.0137 (9)−0.0031 (9)
C40.0309 (9)0.0457 (10)0.0639 (12)0.0020 (8)0.0097 (8)−0.0032 (9)
C50.0448 (11)0.0352 (10)0.1007 (17)0.0089 (8)0.0210 (11)−0.0056 (10)
C60.0423 (10)0.0277 (8)0.0793 (14)0.0008 (7)0.0132 (9)−0.0048 (9)
C70.0328 (9)0.0283 (8)0.0483 (10)−0.0003 (6)0.0023 (7)−0.0020 (7)
C80.0381 (12)0.0773 (17)0.112 (2)−0.0104 (11)0.0238 (13)−0.0012 (15)
S1—O41.4442 (13)C1—C61.391 (2)
S1—O51.4464 (13)C1—C71.471 (2)
S1—O21.4504 (13)C2—C31.377 (3)
S1—O31.5470 (15)C2—H20.9300
O3—H3A0.78 (3)C3—C41.374 (3)
O1—C41.360 (2)C3—H30.9300
O1—C81.427 (3)C4—C51.386 (3)
N1—C71.306 (2)C5—C61.374 (3)
N1—H1A0.86 (2)C5—H50.9300
N1—H1B0.84 (2)C6—H60.9300
N2—C71.308 (2)C8—H8A0.9739
N2—H2A0.84 (2)C8—H8B0.9739
N2—H2B0.86 (3)C8—H8C0.9739
C1—C21.381 (2)
O4—S1—O5112.37 (8)C4—C3—H3120.2
O4—S1—O2113.83 (8)C2—C3—H3120.2
O5—S1—O2111.75 (8)O1—C4—C3124.73 (18)
O4—S1—O3107.52 (8)O1—C4—C5115.75 (17)
O5—S1—O3107.60 (8)C3—C4—C5119.52 (17)
O2—S1—O3103.05 (9)C6—C5—C4120.42 (17)
S1—O3—H3A106.6 (19)C6—C5—H5119.8
C4—O1—C8118.01 (17)C4—C5—H5119.8
C7—N1—H1A123.0 (15)C5—C6—C1120.68 (17)
C7—N1—H1B119.6 (16)C5—C6—H6119.7
H1A—N1—H1B117 (2)C1—C6—H6119.7
C7—N2—H2A120.2 (16)N1—C7—N2118.74 (18)
C7—N2—H2B118.6 (19)N1—C7—C1120.48 (15)
H2A—N2—H2B120 (2)N2—C7—C1120.77 (16)
C2—C1—C6117.86 (16)O1—C8—H8A109.5
C2—C1—C7120.84 (15)O1—C8—H8B109.5
C6—C1—C7121.29 (15)H8A—C8—H8B109.5
C3—C2—C1121.85 (16)O1—C8—H8C109.5
C3—C2—H2119.1H8A—C8—H8C109.5
C1—C2—H2119.1H8B—C8—H8C109.5
C4—C3—C2119.65 (17)
C6—C1—C2—C3−1.4 (3)C3—C4—C5—C6−0.5 (4)
C7—C1—C2—C3179.01 (19)C4—C5—C6—C10.0 (4)
C1—C2—C3—C40.9 (3)C2—C1—C6—C50.9 (3)
C8—O1—C4—C34.9 (3)C7—C1—C6—C5−179.5 (2)
C8—O1—C4—C5−176.0 (2)C2—C1—C7—N1−6.3 (3)
C2—C3—C4—O1179.1 (2)C6—C1—C7—N1174.06 (19)
C2—C3—C4—C50.1 (3)C2—C1—C7—N2172.7 (2)
O1—C4—C5—C6−179.6 (2)C6—C1—C7—N2−6.9 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O2i0.78 (3)1.79 (3)2.562 (2)172 (3)
N1—H1A···O40.86 (2)2.10 (2)2.938 (2)163 (2)
N1—H1B···O5ii0.84 (2)2.10 (2)2.884 (2)154 (2)
N2—H2A···O50.84 (2)2.07 (3)2.907 (2)177 (2)
N2—H2B···O4iii0.86 (3)2.22 (3)2.965 (2)145 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3A⋯O2i 0.78 (3)1.79 (3)2.562 (2)172 (3)
N1—H1A⋯O40.86 (2)2.10 (2)2.938 (2)163 (2)
N1—H1B⋯O5ii 0.84 (2)2.10 (2)2.884 (2)154 (2)
N2—H2A⋯O50.84 (2)2.07 (3)2.907 (2)177 (2)
N2—H2B⋯O4iii 0.86 (3)2.22 (3)2.965 (2)145 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Supramolecular association in proton-transfer adducts containing benzamidinium cations. I. Four molecular salts with uracil derivatives.

Authors:  Gustavo Portalone
Journal:  Acta Crystallogr C       Date:  2010-05-13       Impact factor: 1.172

3.  Substitutions at the P(1) position in BPTI strongly affect the association energy with serine proteinases.

Authors:  A Grzesiak; R Helland; A O Smalås; D Krowarsch; M Dadlez; J Otlewski
Journal:  J Mol Biol       Date:  2000-08-04       Impact factor: 5.469

4.  Supramolecular association in proton-transfer adducts containing benzamidinium cations. II. Concomitant polymorphs of the molecular salt of 2,6-dimethoxybenzoic acid with benzamidine.

Authors:  Simona Irrera; Giancarlo Ortaggi; Gustavo Portalone
Journal:  Acta Crystallogr C       Date:  2012-10-18       Impact factor: 1.172

5.  Solid-phase molecular recognition of cytosine based on proton-transfer reaction. Part II. supramolecular architecture in the cocrystals of cytosine and its 5-Fluoroderivative with 5-Nitrouracil.

Authors:  Gustavo Portalone
Journal:  Chem Cent J       Date:  2011-09-02       Impact factor: 4.215

6.  4-Meth-oxy-benzamidinium 2,6-dimeth-oxy-benzoate.

Authors:  Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-07

7.  A new polymorph of 2,6-dimeth-oxy-benzoic acid.

Authors:  Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-23

8.  4-Meth-oxy-benzamidinium chloride monohydrate.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06
  8 in total
  3 in total

1.  4-Meth-oxy-benzamidinium acetate.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-03

2.  4-Meth-oxy-benzamidinium hydrogen oxalate monohydrate.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-14

3.  4-Meth-oxy-benzamidinium bromide.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-08
  3 in total

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