Literature DB >> 23476172

4-Meth-oxy-benzamidinium nitrate.

Simona Irrera1, Gustavo Portalone.   

Abstract

The title salt, C8H11N2O(+)·NO3(-), was synthesized by a reaction between 4-meth-oxy-benzamidine (4-amidino-anisole) and nitric acid. The asymmetric unit comprises a non-planar 4-meth-oxy-benzamidinium cation and a nitrate anion. In the cation, the amidinium group has two similar C-N bond lengths [1.302 (3) and 1.313 (3) Å] and its plane forms a dihedral angle of 32.66 (5)° with the mean plane of the benzene ring. The nitrate-amidinium ion pair is not planar, as the dihedral angle between the planes defined by the CN2(+) and NO3(-) units is 19.28 (6)°. The ionic components are associated in the crystal via N-H⋯O hydrogen bonds, resulting in a three-dimensional network.

Entities:  

Year:  2012        PMID: 23476172      PMCID: PMC3588936          DOI: 10.1107/S1600536812045874

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and pharmacological relevance of benzamidine, see: Powers & Harper (1999 ▶); Grzesiak et al. (2000 ▶). For structural analysis of proton-transfer adducts containing mol­ecules of biological inter­est, see: Portalone (2011a ▶); Portalone & Irrera (2011 ▶). For the supra­molecular association in proton-transfer adducts containing benzamidinium cations, see; Portalone (2010 ▶, 2011b ▶, 2012 ▶); Irrera & Portalone (2012 ▶); Irrera et al. (2012 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C8H11N2O+·NO3 M = 213.20 Orthorhombic, a = 7.1049 (7) Å b = 10.3558 (8) Å c = 13.4325 (9) Å V = 988.32 (14) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 298 K 0.20 × 0.10 × 0.08 mm

Data collection

Oxford Diffraction Xcalibur S CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006 ▶) T min = 0.977, T max = 0.991 6206 measured reflections 1253 independent reflections 989 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.083 S = 0.98 1253 reflections 154 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.12 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2006 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812045874/fi2127sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812045874/fi2127Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H11N2O+·NO3F(000) = 448
Mr = 213.20Dx = 1.433 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71069 Å
Hall symbol: P 2ac 2abCell parameters from 2927 reflections
a = 7.1049 (7) Åθ = 3.0–29.0°
b = 10.3558 (8) ŵ = 0.12 mm1
c = 13.4325 (9) ÅT = 298 K
V = 988.32 (14) Å3Tablets, colourless
Z = 40.20 × 0.10 × 0.08 mm
Oxford Diffraction Xcalibur S CCD diffractometer1253 independent reflections
Radiation source: Enhance (Mo) X-ray Source989 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
Detector resolution: 16.0696 pixels mm-1θmax = 27.0°, θmin = 3.0°
ω and φ scansh = −8→8
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006)k = −13→12
Tmin = 0.977, Tmax = 0.991l = −17→17
6206 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.083H atoms treated by a mixture of independent and constrained refinement
S = 0.98w = 1/[σ2(Fo2) + (0.0527P)2 + 0.0001P] where P = (Fo2 + 2Fc2)/3
1253 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 0.12 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O40.3500 (3)0.10530 (16)0.33730 (12)0.0565 (5)
N10.3218 (3)0.3966 (2)−0.07851 (16)0.0441 (5)
H1A0.325 (3)0.426 (2)−0.1390 (18)0.041 (6)*
H1B0.268 (3)0.448 (2)−0.0308 (18)0.044 (7)*
N20.4153 (3)0.1984 (2)−0.12938 (16)0.0454 (5)
H2A0.408 (3)0.222 (3)−0.1914 (18)0.046 (7)*
H2B0.463 (3)0.127 (3)−0.1138 (17)0.045 (8)*
C10.3682 (3)0.2331 (2)0.04594 (15)0.0359 (5)
C20.4110 (3)0.3182 (2)0.12224 (14)0.0377 (5)
H20.44260.40320.10720.045*
C30.4073 (3)0.2785 (2)0.22025 (16)0.0419 (5)
H30.43720.33630.27080.050*
C40.3588 (3)0.1520 (2)0.24330 (16)0.0397 (5)
C50.3158 (3)0.0660 (2)0.16755 (17)0.0432 (5)
H50.2832−0.01880.18270.052*
C60.3215 (3)0.1061 (2)0.07021 (17)0.0401 (5)
H60.29370.04780.01970.048*
C70.3686 (3)0.2769 (2)−0.05791 (15)0.0347 (5)
C80.3767 (4)0.1947 (3)0.41712 (18)0.0639 (8)
H8A0.498 (3)0.2338 (16)0.4114 (9)0.096*
H8B0.368 (3)0.1501 (8)0.4793 (11)0.096*
H8C0.282 (2)0.2602 (17)0.4141 (9)0.096*
N30.3829 (3)0.3901 (2)−0.35182 (15)0.0471 (5)
O10.3880 (3)0.46641 (18)−0.28077 (14)0.0669 (5)
O20.3696 (3)0.27255 (18)−0.33771 (13)0.0735 (6)
O30.3962 (3)0.43439 (17)−0.43752 (12)0.0611 (5)
U11U22U33U12U13U23
O40.0789 (12)0.0439 (10)0.0466 (9)−0.0041 (10)0.0002 (8)0.0075 (9)
N10.0525 (12)0.0399 (12)0.0401 (11)0.0049 (10)0.0049 (9)0.0023 (10)
N20.0481 (12)0.0456 (14)0.0425 (12)0.0050 (11)0.0003 (9)−0.0013 (10)
C10.0272 (10)0.0357 (12)0.0448 (11)0.0026 (9)0.0010 (9)−0.0008 (10)
C20.0386 (12)0.0279 (12)0.0466 (12)−0.0024 (9)−0.0005 (9)−0.0001 (10)
C30.0477 (13)0.0346 (11)0.0433 (11)−0.0016 (11)−0.0055 (10)−0.0071 (11)
C40.0403 (12)0.0363 (12)0.0426 (11)0.0034 (10)0.0002 (9)0.0048 (11)
C50.0460 (13)0.0297 (12)0.0537 (13)−0.0028 (11)0.0043 (11)0.0007 (11)
C60.0370 (11)0.0345 (12)0.0488 (12)−0.0006 (10)−0.0001 (10)−0.0055 (11)
C70.0264 (10)0.0359 (12)0.0416 (11)0.0001 (9)0.0020 (9)−0.0032 (11)
C80.0867 (19)0.0635 (18)0.0415 (12)−0.0123 (17)−0.0007 (13)0.0001 (13)
N30.0480 (11)0.0489 (12)0.0446 (10)0.0027 (10)−0.0002 (10)0.0090 (11)
O10.0978 (14)0.0531 (11)0.0498 (9)0.0019 (11)0.0058 (10)0.0028 (9)
O20.1182 (17)0.0438 (11)0.0586 (10)−0.0156 (12)−0.0060 (12)0.0124 (9)
O30.0836 (12)0.0565 (11)0.0434 (9)0.0070 (10)0.0062 (9)0.0164 (9)
O4—C41.354 (3)C3—C41.390 (3)
O4—C81.429 (3)C3—H30.9300
N1—C71.313 (3)C4—C51.387 (3)
N1—H1A0.87 (2)C5—C61.373 (3)
N1—H1B0.91 (2)C5—H50.9300
N2—C71.302 (3)C6—H60.9300
N2—H2A0.87 (2)C8—H8A0.9572
N2—H2B0.84 (3)C8—H8B0.9572
C1—C21.386 (3)C8—H8C0.9572
C1—C61.395 (3)N3—O21.235 (3)
C1—C71.467 (3)N3—O11.240 (3)
C2—C31.379 (3)N3—O31.243 (2)
C2—H20.9300
C4—O4—C8117.53 (18)C6—C5—C4119.9 (2)
C7—N1—H1A121.4 (16)C6—C5—H5120.1
C7—N1—H1B120.3 (14)C4—C5—H5120.1
H1A—N1—H1B118 (2)C5—C6—C1121.0 (2)
C7—N2—H2A120.8 (17)C5—C6—H6119.5
C7—N2—H2B118.0 (16)C1—C6—H6119.5
H2A—N2—H2B121 (2)N2—C7—N1120.0 (2)
C2—C1—C6118.62 (19)N2—C7—C1120.6 (2)
C2—C1—C7120.41 (18)N1—C7—C1119.49 (19)
C6—C1—C7120.95 (19)O4—C8—H8A109.5
C3—C2—C1120.8 (2)O4—C8—H8B109.5
C3—C2—H2119.6H8A—C8—H8B109.5
C1—C2—H2119.6O4—C8—H8C109.5
C2—C3—C4119.9 (2)H8A—C8—H8C109.5
C2—C3—H3120.1H8B—C8—H8C109.5
C4—C3—H3120.1O2—N3—O1120.82 (19)
O4—C4—C5116.40 (19)O2—N3—O3120.8 (2)
O4—C4—C3123.8 (2)O1—N3—O3118.4 (2)
C5—C4—C3119.8 (2)
C6—C1—C2—C3−0.1 (3)C3—C4—C5—C60.1 (3)
C7—C1—C2—C3178.67 (18)C4—C5—C6—C1−0.6 (3)
C1—C2—C3—C4−0.5 (3)C2—C1—C6—C50.6 (3)
C8—O4—C4—C5−174.4 (2)C7—C1—C6—C5−178.10 (19)
C8—O4—C4—C35.5 (3)C2—C1—C7—N2148.0 (2)
C2—C3—C4—O4−179.38 (19)C6—C1—C7—N2−33.3 (3)
C2—C3—C4—C50.5 (3)C2—C1—C7—N1−31.7 (3)
O4—C4—C5—C6179.9 (2)C6—C1—C7—N1147.0 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O10.87 (2)2.00 (2)2.850 (3)166 (2)
N1—H1B···O3i0.91 (2)2.10 (2)3.008 (3)170 (2)
N2—H2A···O20.87 (2)2.05 (2)2.920 (3)175 (2)
N2—H2B···O1ii0.84 (3)2.43 (3)3.030 (3)129 (2)
N2—H2B···O3ii0.84 (3)2.33 (3)3.174 (3)177 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O10.87 (2)2.00 (2)2.850 (3)166 (2)
N1—H1B⋯O3i 0.91 (2)2.10 (2)3.008 (3)170 (2)
N2—H2A⋯O20.87 (2)2.05 (2)2.920 (3)175 (2)
N2—H2B⋯O1ii 0.84 (3)2.43 (3)3.030 (3)129 (2)
N2—H2B⋯O3ii 0.84 (3)2.33 (3)3.174 (3)177 (2)

Symmetry codes: (i) ; (ii) .

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1.  4-Meth-oxy-benzamidinium bromide.

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