Literature DB >> 23468790

4-Meth-oxy-benzamidinium acetate.

Simona Irrera1, Gustavo Portalone.   

Abstract

The title compound, C8H11N2O(+)·CH3CO2(-), was synthesized by a reaction between 4-meth-oxy-benzamidine (4-amidino-anisole) and acetic acid. In the cation, the amidinium group forms a dihedral angle of 11.65 (17)° with the mean plane of the benzene ring. The ionic components are associated in the crystal via N-H(+)⋯O(-) hydrogen bonds, resulting in a one-dimensional structure consisting of dimers and catemers and orientated approximately along the c axis.

Entities:  

Year:  2012        PMID: 23468790      PMCID: PMC3588825          DOI: 10.1107/S1600536812044911

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and pharmacological relevance of benzamidine, see: Powers & Harper (1999 ▶). For structural analysis of proton-transfer adducts containing mol­ecules of biological inter­est, see: Portalone, (2011a ▶); Portalone & Irrera (2011 ▶). For the supra­molecular association in proton-transfer adducts containing benzamidinium cations, see; Portalone (2010 ▶, 2011b ▶, 2012 ▶); Irrera & Portalone (2012a ▶,b ▶); Irrera et al. (2012 ▶). For hydrogen-bond motifs, see Bernstein et al. (1995 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C8H11N2O+·C2H3O2 M = 210.23 Monoclinic, a = 8.7591 (14) Å b = 6.5478 (8) Å c = 19.456 (3) Å β = 102.580 (14)° V = 1089.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 298 K 0.21 × 0.18 × 0.15 mm

Data collection

Oxford Diffraction Xcalibur S CCD diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.980, T max = 0.986 14433 measured reflections 2365 independent reflections 1834 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.141 S = 1.08 2365 reflections 156 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812044911/tk5166sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812044911/tk5166Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H11N2O+·C2H3O2F(000) = 448
Mr = 210.23Dx = 1.282 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3220 reflections
a = 8.7591 (14) Åθ = 2.8–28.9°
b = 6.5478 (8) ŵ = 0.10 mm1
c = 19.456 (3) ÅT = 298 K
β = 102.580 (14)°Tablets, colourless
V = 1089.0 (3) Å30.21 × 0.18 × 0.15 mm
Z = 4
Oxford Diffraction Xcalibur S CCD diffractometer2365 independent reflections
Radiation source: Enhance (Mo) X-ray Source1834 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.040
Detector resolution: 16.0696 pixels mm-1θmax = 27.0°, θmin = 3.3°
ω and φ scansh = −11→11
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −8→8
Tmin = 0.980, Tmax = 0.986l = −24→24
14433 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.141H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0561P)2 + 0.3698P] where P = (Fo2 + 2Fc2)/3
2365 reflections(Δ/σ)max < 0.001
156 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O30.2977 (2)1.0070 (2)0.35136 (8)0.0624 (5)
N1−0.0153 (2)0.1780 (3)0.42774 (8)0.0453 (4)
H1A−0.074 (3)0.064 (4)0.4296 (12)0.063 (7)*
H1B0.054 (3)0.217 (4)0.4677 (13)0.063 (7)*
N2−0.1170 (2)0.2005 (3)0.31128 (9)0.0468 (4)
H2A−0.175 (3)0.081 (4)0.3149 (12)0.070 (7)*
H2B−0.133 (3)0.261 (3)0.2696 (13)0.055 (6)*
C10.0643 (2)0.4636 (3)0.36478 (9)0.0343 (4)
C20.1370 (2)0.5636 (3)0.42564 (10)0.0449 (5)
H20.13180.50770.46900.054*
C30.2173 (2)0.7446 (3)0.42381 (10)0.0472 (5)
H30.26590.80880.46550.057*
C40.2248 (2)0.8294 (3)0.35969 (10)0.0429 (5)
C50.1539 (3)0.7298 (4)0.29855 (10)0.0584 (6)
H50.15940.78560.25520.070*
C60.0756 (3)0.5502 (3)0.30090 (10)0.0510 (5)
H60.02930.48490.25910.061*
C7−0.0247 (2)0.2737 (3)0.36775 (9)0.0356 (4)
C80.3954 (3)1.0997 (4)0.41088 (13)0.0624 (6)
H8A0.3323 (10)1.130 (2)0.4474 (7)0.094*
H8B0.4395 (17)1.231 (2)0.3962 (3)0.094*
H8C0.4838 (17)1.0040 (17)0.4315 (6)0.094*
O1−0.20216 (18)−0.1693 (2)0.44118 (7)0.0548 (4)
O2−0.29092 (18)−0.1444 (2)0.32662 (7)0.0550 (4)
C9−0.2818 (2)−0.2339 (3)0.38404 (9)0.0390 (4)
C10−0.3743 (3)−0.4258 (3)0.38417 (12)0.0606 (6)
H10A−0.3120 (10)−0.5337 (17)0.3841 (9)0.091*
H10B−0.4519 (17)−0.4292 (13)0.3458 (7)0.091*
H10C−0.4143 (17)−0.4291 (12)0.4226 (7)0.091*
U11U22U33U12U13U23
O30.0827 (11)0.0586 (9)0.0449 (9)−0.0302 (8)0.0113 (8)0.0040 (7)
N10.0564 (11)0.0443 (10)0.0298 (8)−0.0120 (8)−0.0020 (7)0.0052 (7)
N20.0613 (11)0.0439 (10)0.0293 (9)−0.0095 (8)−0.0034 (8)0.0040 (7)
C10.0389 (10)0.0354 (9)0.0271 (9)0.0018 (7)0.0039 (7)0.0009 (7)
C20.0616 (13)0.0460 (11)0.0263 (9)−0.0063 (9)0.0076 (8)0.0021 (8)
C30.0616 (13)0.0474 (11)0.0302 (10)−0.0119 (9)0.0049 (9)−0.0056 (8)
C40.0485 (11)0.0423 (10)0.0379 (10)−0.0043 (8)0.0092 (8)0.0012 (8)
C50.0798 (16)0.0647 (14)0.0292 (10)−0.0221 (12)0.0083 (10)0.0075 (9)
C60.0686 (14)0.0545 (12)0.0270 (10)−0.0158 (10)0.0037 (9)−0.0019 (8)
C70.0411 (10)0.0358 (9)0.0279 (9)0.0021 (7)0.0030 (7)0.0007 (7)
C80.0673 (15)0.0587 (14)0.0587 (14)−0.0234 (11)0.0086 (12)−0.0064 (11)
O10.0657 (10)0.0627 (9)0.0293 (7)−0.0192 (7)−0.0045 (6)0.0027 (6)
O20.0742 (10)0.0551 (9)0.0281 (7)−0.0154 (7)−0.0053 (7)0.0019 (6)
C90.0376 (10)0.0436 (10)0.0330 (10)−0.0009 (8)0.0014 (8)−0.0003 (8)
C100.0608 (14)0.0558 (13)0.0603 (15)−0.0123 (11)0.0023 (12)0.0026 (11)
O3—C41.353 (2)C3—H30.9300
O3—C81.418 (3)C4—C51.380 (3)
N1—C71.312 (2)C5—C61.367 (3)
N1—H1A0.91 (3)C5—H50.9300
N1—H1B0.91 (2)C6—H60.9300
N2—C71.306 (2)C8—H8A1.0093
N2—H2A0.94 (3)C8—H8B1.0093
N2—H2B0.88 (2)C8—H8C1.0093
C1—C21.381 (2)O1—C91.250 (2)
C1—C61.389 (3)O2—C91.249 (2)
C1—C71.475 (2)C9—C101.495 (3)
C2—C31.383 (3)C10—H10A0.8930
C2—H20.9300C10—H10B0.8930
C3—C41.380 (3)C10—H10C0.8930
C4—O3—C8119.11 (16)C5—C6—C1121.01 (18)
C7—N1—H1A120.0 (14)C5—C6—H6119.5
C7—N1—H1B121.9 (15)C1—C6—H6119.5
H1A—N1—H1B118 (2)N2—C7—N1118.69 (18)
C7—N2—H2A119.1 (14)N2—C7—C1120.84 (16)
C7—N2—H2B123.6 (14)N1—C7—C1120.45 (16)
H2A—N2—H2B117 (2)O3—C8—H8A109.5
C2—C1—C6117.64 (17)O3—C8—H8B109.5
C2—C1—C7120.99 (16)H8A—C8—H8B109.5
C6—C1—C7121.36 (16)O3—C8—H8C109.5
C1—C2—C3121.77 (17)H8A—C8—H8C109.5
C1—C2—H2119.1H8B—C8—H8C109.5
C3—C2—H2119.1O2—C9—O1123.45 (18)
C4—C3—C2119.52 (17)O2—C9—C10117.82 (16)
C4—C3—H3120.2O1—C9—C10118.71 (17)
C2—C3—H3120.2C9—C10—H10A109.5
O3—C4—C5116.00 (17)C9—C10—H10B109.5
O3—C4—C3124.78 (17)H10A—C10—H10B109.5
C5—C4—C3119.22 (18)C9—C10—H10C109.5
C6—C5—C4120.83 (18)H10A—C10—H10C109.5
C6—C5—H5119.6H10B—C10—H10C109.5
C4—C5—H5119.6
C6—C1—C2—C30.6 (3)C3—C4—C5—C60.6 (4)
C7—C1—C2—C3−178.24 (18)C4—C5—C6—C10.5 (4)
C1—C2—C3—C40.4 (3)C2—C1—C6—C5−1.1 (3)
C8—O3—C4—C5−169.3 (2)C7—C1—C6—C5177.8 (2)
C8—O3—C4—C310.9 (3)C2—C1—C7—N2167.00 (19)
C2—C3—C4—O3178.89 (19)C6—C1—C7—N2−11.9 (3)
C2—C3—C4—C5−1.0 (3)C2—C1—C7—N1−11.3 (3)
O3—C4—C5—C6−179.3 (2)C6—C1—C7—N1169.9 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O10.91 (3)1.94 (3)2.847 (2)175 (2)
N1—H1B···O1i0.91 (2)1.98 (2)2.832 (2)155 (2)
N2—H2A···O20.94 (3)1.83 (3)2.776 (2)176 (2)
N2—H2B···O2ii0.88 (2)1.95 (2)2.817 (2)168 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O10.91 (3)1.94 (3)2.847 (2)175 (2)
N1—H1B⋯O1i 0.91 (2)1.98 (2)2.832 (2)155 (2)
N2—H2A⋯O20.94 (3)1.83 (3)2.776 (2)176 (2)
N2—H2B⋯O2ii 0.88 (2)1.95 (2)2.817 (2)168 (2)

Symmetry codes: (i) ; (ii) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Supramolecular association in proton-transfer adducts containing benzamidinium cations. I. Four molecular salts with uracil derivatives.

Authors:  Gustavo Portalone
Journal:  Acta Crystallogr C       Date:  2010-05-13       Impact factor: 1.172

3.  Supramolecular association in proton-transfer adducts containing benzamidinium cations. II. Concomitant polymorphs of the molecular salt of 2,6-dimethoxybenzoic acid with benzamidine.

Authors:  Simona Irrera; Giancarlo Ortaggi; Gustavo Portalone
Journal:  Acta Crystallogr C       Date:  2012-10-18       Impact factor: 1.172

4.  Solid-phase molecular recognition of cytosine based on proton-transfer reaction. Part II. supramolecular architecture in the cocrystals of cytosine and its 5-Fluoroderivative with 5-Nitrouracil.

Authors:  Gustavo Portalone
Journal:  Chem Cent J       Date:  2011-09-02       Impact factor: 4.215

5.  4-Meth-oxy-benzamidinium 2,6-dimeth-oxy-benzoate.

Authors:  Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-07

6.  A new polymorph of 2,6-dimeth-oxy-benzoic acid.

Authors:  Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-23

7.  4-Meth-oxy-benzamidinium hydrogen sulfate.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-31

8.  4-Meth-oxy-benzamidinium chloride monohydrate.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06
  8 in total
  2 in total

1.  4-Meth-oxy-benzamidinium hydrogen oxalate monohydrate.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-14

2.  4-Meth-oxy-benzamidinium bromide.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-08
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.