Literature DB >> 24046672

Benzamidinium 2-meth-oxy-benzoate.

Gustavo Portalone1.   

Abstract

The title mol-ecular salt, C7H9N2 (+.)C8H7O3 (-), was synthesized by reaction between benzamidine (benzene-carboximidamide) and 2-meth-oxy-benzoic acid. In the cation, the amidinium group has two similar C-N bonds [1.3070 (17) and 1.3145 (16) Å] and is almost coplanar with the benzene ring, making a dihedral angle of 5.34 (12)°. In the anion, the meth-oxy substituent forces the carboxyl-ate group to be twisted by 69.45 (6)° with respect to the plane of the aromatic fragment. In the crystal, the components are connected by two N(+)-H⋯O(-) (±)CAHB (charge-assisted hydrogen bonds), forming centrosymmetric ionic dimers with graph-set motif R 2 (2)(8). These ionic dimers are then joined in ribbons running along the b-axis direction by another R 4 (2)(8) motif involving the remaining N(+)-H⋯O(-) hydrogen bonds. Remarkably, at variance with the well known carb-oxy-lic dimer R 2 (2)(8) motif, the carboxyl-ate-amidinium pair is not planar, the dihedral angle between the planes defined by the CN2 (+) and CO2 (-) atoms being 18.57 (12)°.

Entities:  

Year:  2013        PMID: 24046672      PMCID: PMC3770387          DOI: 10.1107/S1600536813016395

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological and pharmacological relevance of benzamidine, see: Powers & Harper (1999 ▶). For structural analysis of proton-transfer adducts containing mol­ecules of biological inter­est, see: Portalone (2010 ▶, 2013 ▶). For the supra­molecular association in proton-transfer adducts containing benzamidinium cations, see: Portalone (2010 ▶, 2012 ▶, 2013 ▶); Irrera & Portalone (2012 ▶, 2013 ▶); Irrera et al. (2012 ▶). For 2-meth­oxy­benzoic acid derivatives, see: Portalone (2011 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C7H9N2C8H7O3 M = 272.30 Triclinic, a = 7.5154 (3) Å b = 9.1393 (4) Å c = 11.6498 (5) Å α = 69.612 (3)° β = 80.500 (5)° γ = 72.482 (4)° V = 713.63 (6) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.12 × 0.09 × 0.05 mm

Data collection

Agilent Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.989, T max = 0.996 20559 measured reflections 4332 independent reflections 3188 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.161 S = 1.05 4332 reflections 199 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.38 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813016395/nk2209sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813016395/nk2209Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H9N2+·C8H7O3Z = 2
Mr = 272.30F(000) = 288
Triclinic, P1Dx = 1.267 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71069 Å
a = 7.5154 (3) ÅCell parameters from 9004 reflections
b = 9.1393 (4) Åθ = 3.2–32.5°
c = 11.6498 (5) ŵ = 0.09 mm1
α = 69.612 (3)°T = 298 K
β = 80.500 (5)°Tablets, colourless
γ = 72.482 (4)°0.12 × 0.09 × 0.05 mm
V = 713.63 (6) Å3
Agilent Xcalibur Sapphire3 diffractometer4332 independent reflections
Radiation source: Enhance (Mo) X-ray Source3188 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.025
Detector resolution: 16.0696 pixels mm-1θmax = 30.5°, θmin = 3.2°
ω and φ scansh = −10→10
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −13→13
Tmin = 0.989, Tmax = 0.996l = −16→16
20559 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.161H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0812P)2 + 0.1295P] where P = (Fo2 + 2Fc2)/3
4332 reflections(Δ/σ)max < 0.001
199 parametersΔρmax = 0.38 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1−0.44074 (18)0.33628 (15)0.94036 (13)0.0426 (3)
H1A−0.369 (3)0.355 (2)0.9866 (17)0.052 (5)*
H1B−0.550 (3)0.403 (2)0.9196 (17)0.053 (5)*
N2−0.21153 (17)0.11282 (17)0.93377 (13)0.0464 (3)
H2A−0.139 (3)0.138 (2)0.9810 (17)0.055 (5)*
H2B−0.167 (3)0.022 (3)0.9197 (18)0.059 (5)*
C1−0.50196 (17)0.16439 (15)0.84181 (11)0.0319 (3)
C2−0.6776 (2)0.2674 (2)0.81080 (18)0.0531 (4)
H2−0.71780.36930.82810.064*
C3−0.7954 (2)0.2254 (2)0.75542 (18)0.0602 (5)
H3−0.91720.29860.73330.072*
C4−0.7414 (2)0.0816 (2)0.73164 (15)0.0508 (4)
H4−0.82540.05220.69390.061*
C5−0.5678 (2)−0.0216 (2)0.76121 (16)0.0504 (4)
H5−0.5291−0.12330.74350.060*
C6−0.4480 (2)0.01930 (18)0.81621 (14)0.0418 (3)
H6−0.3257−0.05390.83690.050*
C7−0.38026 (17)0.20627 (15)0.90698 (12)0.0323 (3)
O1−0.24816 (15)0.39582 (13)1.09618 (11)0.0513 (3)
O2−0.00870 (15)0.18920 (14)1.08560 (11)0.0536 (3)
O3−0.24579 (19)0.2238 (2)1.37136 (12)0.0694 (4)
C8−0.00944 (18)0.31556 (15)1.23202 (12)0.0335 (3)
C9−0.0897 (2)0.2793 (2)1.35187 (14)0.0434 (3)
C10−0.0097 (3)0.2988 (2)1.44339 (15)0.0572 (4)
H10−0.06540.27371.52680.069*
C110.1493 (3)0.3540 (2)1.41503 (17)0.0578 (5)
H110.20440.36781.47900.069*
C120.2300 (3)0.3895 (2)1.29805 (18)0.0567 (4)
H120.34170.42811.27880.068*
C130.1494 (2)0.3694 (2)1.20632 (14)0.0466 (4)
H130.20660.39401.12330.056*
C14−0.09582 (18)0.29772 (15)1.13074 (12)0.0335 (3)
C15−0.3237 (4)0.1697 (4)1.4934 (2)0.0938 (8)
H15A−0.2241 (19)0.083 (2)1.5466 (11)0.141*
H15B−0.430 (3)0.123 (2)1.4938 (3)0.141*
H15C−0.372 (3)0.2639 (17)1.5268 (9)0.141*
U11U22U33U12U13U23
N10.0387 (6)0.0361 (6)0.0566 (8)0.0057 (5)−0.0185 (5)−0.0255 (6)
N20.0370 (6)0.0443 (7)0.0641 (8)0.0087 (5)−0.0192 (6)−0.0341 (7)
C10.0328 (6)0.0316 (6)0.0304 (6)−0.0023 (5)−0.0065 (5)−0.0122 (5)
C20.0485 (8)0.0434 (8)0.0714 (11)0.0097 (7)−0.0279 (8)−0.0309 (8)
C30.0469 (9)0.0595 (10)0.0779 (12)0.0077 (8)−0.0332 (8)−0.0317 (9)
C40.0538 (9)0.0555 (9)0.0506 (9)−0.0146 (7)−0.0188 (7)−0.0189 (7)
C50.0590 (9)0.0429 (8)0.0573 (9)−0.0076 (7)−0.0158 (7)−0.0253 (7)
C60.0410 (7)0.0373 (7)0.0483 (8)0.0006 (6)−0.0120 (6)−0.0202 (6)
C70.0325 (6)0.0305 (6)0.0331 (6)−0.0015 (5)−0.0057 (5)−0.0133 (5)
O10.0498 (6)0.0453 (6)0.0616 (7)0.0158 (5)−0.0293 (5)−0.0328 (5)
O20.0462 (6)0.0537 (7)0.0690 (7)0.0137 (5)−0.0211 (5)−0.0442 (6)
O30.0628 (8)0.1107 (12)0.0494 (7)−0.0439 (8)0.0064 (6)−0.0300 (7)
C80.0341 (6)0.0297 (6)0.0363 (6)0.0028 (5)−0.0105 (5)−0.0156 (5)
C90.0415 (7)0.0506 (8)0.0409 (7)−0.0066 (6)−0.0066 (6)−0.0208 (6)
C100.0624 (10)0.0752 (12)0.0384 (8)−0.0115 (9)−0.0104 (7)−0.0258 (8)
C110.0645 (11)0.0638 (11)0.0548 (10)−0.0087 (9)−0.0253 (8)−0.0279 (8)
C120.0536 (9)0.0614 (10)0.0652 (11)−0.0192 (8)−0.0166 (8)−0.0232 (9)
C130.0472 (8)0.0541 (9)0.0420 (8)−0.0150 (7)−0.0045 (6)−0.0175 (7)
C140.0344 (6)0.0301 (6)0.0366 (6)−0.0001 (5)−0.0088 (5)−0.0156 (5)
C150.0826 (16)0.144 (2)0.0608 (13)−0.0546 (17)0.0201 (12)−0.0299 (14)
N1—C71.3070 (17)O1—C141.2488 (15)
N1—H1A0.913 (19)O2—C141.2441 (16)
N1—H1B0.87 (2)O3—C91.369 (2)
N2—C71.3145 (16)O3—C151.421 (3)
N2—H2A0.959 (19)C8—C131.375 (2)
N2—H2B0.86 (2)C8—C91.394 (2)
C1—C61.3869 (19)C8—C141.5135 (17)
C1—C21.3898 (19)C9—C101.393 (2)
C1—C71.4838 (18)C10—C111.381 (3)
C2—C31.383 (2)C10—H100.9700
C2—H20.9700C11—C121.367 (3)
C3—C41.366 (2)C11—H110.9700
C3—H30.9700C12—C131.399 (2)
C4—C51.375 (2)C12—H120.9700
C4—H40.9700C13—H130.9700
C5—C61.386 (2)C15—H15A1.0120
C5—H50.9700C15—H15B1.0120
C6—H60.9700C15—H15C1.0120
C7—N1—H1A119.2 (12)C13—C8—C9119.07 (13)
C7—N1—H1B120.3 (12)C13—C8—C14120.07 (12)
H1A—N1—H1B120.5 (17)C9—C8—C14120.86 (12)
C7—N2—H2A119.6 (11)O3—C9—C10124.03 (15)
C7—N2—H2B123.2 (13)O3—C9—C8115.99 (13)
H2A—N2—H2B116.7 (17)C10—C9—C8119.97 (15)
C6—C1—C2118.65 (13)C11—C10—C9119.83 (16)
C6—C1—C7121.19 (11)C11—C10—H10120.1
C2—C1—C7120.08 (12)C9—C10—H10120.1
C3—C2—C1120.39 (14)C12—C11—C10120.83 (15)
C3—C2—H2119.8C12—C11—H11119.6
C1—C2—H2119.8C10—C11—H11119.6
C4—C3—C2120.44 (15)C11—C12—C13119.22 (16)
C4—C3—H3119.8C11—C12—H12120.4
C2—C3—H3119.8C13—C12—H12120.4
C3—C4—C5119.99 (14)C8—C13—C12121.07 (15)
C3—C4—H4120.0C8—C13—H13119.5
C5—C4—H4120.0C12—C13—H13119.5
C4—C5—C6120.16 (15)O2—C14—O1124.40 (12)
C4—C5—H5119.9O2—C14—C8118.04 (11)
C6—C5—H5119.9O1—C14—C8117.53 (11)
C5—C6—C1120.36 (13)O3—C15—H15A109.5
C5—C6—H6119.8O3—C15—H15B109.5
C1—C6—H6119.8H15A—C15—H15B109.5
N1—C7—N2118.81 (13)O3—C15—H15C109.5
N1—C7—C1120.25 (11)H15A—C15—H15C109.5
N2—C7—C1120.93 (12)H15B—C15—H15C109.5
C9—O3—C15118.79 (15)
C6—C1—C2—C3−0.1 (3)C14—C8—C9—O31.6 (2)
C7—C1—C2—C3−176.85 (16)C13—C8—C9—C100.4 (2)
C1—C2—C3—C40.7 (3)C14—C8—C9—C10−179.03 (14)
C2—C3—C4—C5−0.9 (3)O3—C9—C10—C11179.31 (17)
C3—C4—C5—C60.6 (3)C8—C9—C10—C11−0.1 (3)
C4—C5—C6—C10.0 (3)C9—C10—C11—C12−0.2 (3)
C2—C1—C6—C5−0.2 (2)C10—C11—C12—C130.1 (3)
C7—C1—C6—C5176.50 (14)C9—C8—C13—C12−0.6 (2)
C6—C1—C7—N1−173.63 (14)C14—C8—C13—C12178.91 (14)
C2—C1—C7—N13.1 (2)C11—C12—C13—C80.3 (3)
C6—C1—C7—N25.4 (2)C13—C8—C14—O268.85 (18)
C2—C1—C7—N2−177.93 (15)C9—C8—C14—O2−111.69 (16)
C15—O3—C9—C10−5.5 (3)C13—C8—C14—O1−109.51 (16)
C15—O3—C9—C8173.93 (19)C9—C8—C14—O169.95 (18)
C13—C8—C9—O3−178.98 (14)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O10.913 (19)1.87 (2)2.7777 (16)172.4 (17)
N1—H1B···O1i0.87 (2)1.97 (2)2.7926 (15)155.7 (17)
N2—H2A···O20.959 (19)1.93 (2)2.8863 (17)175.4 (16)
N2—H2B···O2ii0.86 (2)2.00 (2)2.8230 (16)160.3 (18)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O10.913 (19)1.87 (2)2.7777 (16)172.4 (17)
N1—H1B⋯O1i 0.87 (2)1.97 (2)2.7926 (15)155.7 (17)
N2—H2A⋯O20.959 (19)1.93 (2)2.8863 (17)175.4 (16)
N2—H2B⋯O2ii 0.86 (2)2.00 (2)2.8230 (16)160.3 (18)

Symmetry codes: (i) ; (ii) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Supramolecular association in proton-transfer adducts containing benzamidinium cations. I. Four molecular salts with uracil derivatives.

Authors:  Gustavo Portalone
Journal:  Acta Crystallogr C       Date:  2010-05-13       Impact factor: 1.172

3.  Supramolecular association in proton-transfer adducts containing benzamidinium cations. II. Concomitant polymorphs of the molecular salt of 2,6-dimethoxybenzoic acid with benzamidine.

Authors:  Simona Irrera; Giancarlo Ortaggi; Gustavo Portalone
Journal:  Acta Crystallogr C       Date:  2012-10-18       Impact factor: 1.172

4.  4-Meth-oxy-benzamidinium 2,6-dimeth-oxy-benzoate.

Authors:  Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-01-07

5.  A new polymorph of 2,6-dimeth-oxy-benzoic acid.

Authors:  Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-23

6.  4-Meth-oxy-benzamidinium bromide.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-08

7.  4-Meth-oxy-benzamidinium chloride monohydrate.

Authors:  Simona Irrera; Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-10-06

8.  Cytosinium orotate dihydrate.

Authors:  Gustavo Portalone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-12-05
  8 in total
  1 in total

1.  Synthesis of new thienylpicolinamidine derivatives and possible mechanisms of antiproliferative activity.

Authors:  Mohamed A Ismail; Mohamed H Abdel-Rhman; Ghada A Abdelwahab; Wafaa S Hamama; Heba M El-Shafeai; Wael M El-Sayed
Journal:  RSC Adv       Date:  2020-11-11       Impact factor: 4.036

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.