| Literature DB >> 23476187 |
Simona Irrera1, Gustavo Portalone.
Abstract
The title hydrated salt, C8H11N2O(+)·C2HO4(-)·H2O, was synthesized by a reaction of 4-meth-oxy-benzamidine (4-amidino-anisole) and oxalic acid in water solution. In the cation, the amidinium group forms a dihedral angle of 15.60 (6)° with the mean plane of the benzene ring. In the crystal, each amidinium unit is bound to three acetate anions and one water mol-ecule by six distinct N-H⋯O hydrogen bonds. The ion pairs of the asymmetric unit are joined by two N-H⋯O hydrogen bonds into ionic dimers in which the carbonyl O atom of the semi-oxalate anion acts as a bifurcated acceptor, thus generating an R(1)2(6) motif. These subunits are then joined through the remaining N-H⋯O hydrogen bonds to adjacent semi-oxalate anions into linear tetra-meric chains running approximately along the b axis. The structure is stabilized by N-H⋯O and O-H⋯O inter-molecular hydrogen bonds. The water mol-ecule plays an important role in the cohesion and the stability of the crystal structure being involved in three hydrogen bonds connecting two semi-oxalate anions as donor and a benzamidinium cation as acceptor.Entities:
Year: 2012 PMID: 23476187 PMCID: PMC3588951 DOI: 10.1107/S1600536812046351
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H11N2O+·C2HO4−·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4235 reflections |
| θ = 3.0–29.1° | |
| µ = 0.12 mm−1 | |
| β = 93.156 (10)° | Tablets, colourless |
| 0.18 × 0.12 × 0.09 mm | |
| Oxford Diffraction Xcalibur S CCD diffractometer | 2135 independent reflections |
| Radiation source: Enhance (Mo) X-ray Source | 1693 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.0696 pixels mm-1 | θmax = 25.4°, θmin = 3.2° |
| ω and φ scans | |
| Absorption correction: multi-scan ( | |
| 15203 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2135 reflections | (Δ/σ)max < 0.001 |
| 201 parameters | Δρmax = 0.16 e Å−3 |
| 2 restraints | Δρmin = −0.15 e Å−3 |
| Experimental. Absorption correction: CrysAlisPro, Agilent Technologies, Version 1.171.35.19 (release 27-10-2011 CrysAlis171 .NET) (compiled Oct 27 2011,15:02:11) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| O1 | 0.8980 (2) | 0.07501 (16) | 0.24710 (8) | 0.0511 (4) | |
| N1 | 0.7104 (3) | −0.2554 (2) | −0.06019 (12) | 0.0484 (5) | |
| H1A | 0.671 (4) | −0.287 (3) | −0.1070 (16) | 0.084 (9)* | |
| H1B | 0.728 (3) | −0.326 (3) | −0.0238 (13) | 0.060 (7)* | |
| N2 | 0.6975 (3) | −0.0163 (2) | −0.09613 (11) | 0.0439 (5) | |
| H2A | 0.668 (3) | −0.043 (2) | −0.1409 (14) | 0.055 (7)* | |
| H2B | 0.702 (3) | 0.080 (3) | −0.0883 (12) | 0.053 (7)* | |
| C1 | 0.7801 (2) | −0.0672 (2) | 0.03205 (10) | 0.0327 (4) | |
| C2 | 0.8530 (3) | −0.1659 (2) | 0.08440 (11) | 0.0420 (5) | |
| H2 | 0.8730 | −0.2635 | 0.0707 | 0.050* | |
| C3 | 0.8970 (3) | −0.1231 (2) | 0.15668 (11) | 0.0414 (5) | |
| H3 | 0.9472 | −0.1908 | 0.1910 | 0.050* | |
| C4 | 0.8654 (3) | 0.0217 (2) | 0.17730 (11) | 0.0371 (5) | |
| C5 | 0.7954 (3) | 0.1222 (2) | 0.12537 (11) | 0.0440 (5) | |
| H5 | 0.7761 | 0.2199 | 0.1390 | 0.053* | |
| C6 | 0.7543 (3) | 0.0788 (2) | 0.05387 (11) | 0.0395 (5) | |
| H6 | 0.7085 | 0.1478 | 0.0194 | 0.047* | |
| C7 | 0.7288 (2) | −0.1139 (2) | −0.04408 (10) | 0.0346 (5) | |
| C8 | 0.9800 (3) | −0.0223 (3) | 0.30183 (12) | 0.0542 (6) | |
| H8A | 0.9075 (15) | −0.1129 (14) | 0.3028 (6) | 0.081* | |
| H8B | 0.981 (2) | 0.0250 (9) | 0.3499 (7) | 0.081* | |
| H8C | 1.1076 (19) | −0.0452 (14) | 0.2900 (5) | 0.081* | |
| O3 | 0.6035 (2) | −0.17989 (15) | −0.22870 (8) | 0.0506 (4) | |
| O4 | 0.4130 (2) | −0.35402 (14) | −0.27537 (8) | 0.0448 (4) | |
| H4 | 0.454 (4) | −0.412 (3) | −0.2291 (15) | 0.086 (8)* | |
| O5 | 0.4872 (2) | 0.00180 (14) | −0.34351 (8) | 0.0478 (4) | |
| O6 | 0.3608 (2) | −0.19541 (15) | −0.39997 (8) | 0.0517 (4) | |
| C9 | 0.4936 (3) | −0.22516 (19) | −0.27658 (11) | 0.0354 (5) | |
| C10 | 0.4403 (3) | −0.1325 (2) | −0.34652 (11) | 0.0383 (5) | |
| O2W | 0.7296 (9) | −0.5215 (3) | 0.02842 (17) | 0.0531 (13) | 0.85 (2) |
| H21W | 0.646 (3) | −0.530 (3) | 0.0600 (14) | 0.080* | |
| H22W | 0.699 (4) | −0.578 (3) | −0.0102 (12) | 0.080* | |
| O21W | 0.845 (10) | −0.520 (2) | 0.008 (2) | 0.101 (17) | 0.15 (2) |
| O1 | 0.0703 (10) | 0.0445 (8) | 0.0369 (8) | 0.0073 (7) | −0.0118 (7) | −0.0061 (7) |
| N1 | 0.0728 (13) | 0.0325 (10) | 0.0385 (11) | −0.0018 (9) | −0.0083 (10) | −0.0023 (9) |
| N2 | 0.0607 (12) | 0.0371 (11) | 0.0328 (11) | −0.0035 (8) | −0.0074 (9) | 0.0024 (8) |
| C1 | 0.0334 (10) | 0.0303 (10) | 0.0341 (11) | −0.0011 (8) | 0.0007 (8) | −0.0002 (8) |
| C2 | 0.0576 (13) | 0.0273 (10) | 0.0406 (12) | 0.0026 (9) | −0.0034 (10) | −0.0015 (9) |
| C3 | 0.0513 (13) | 0.0332 (10) | 0.0386 (12) | 0.0015 (9) | −0.0080 (10) | 0.0052 (9) |
| C4 | 0.0373 (11) | 0.0383 (11) | 0.0353 (11) | −0.0010 (8) | −0.0021 (8) | −0.0038 (9) |
| C5 | 0.0572 (13) | 0.0292 (10) | 0.0449 (13) | 0.0061 (9) | −0.0045 (10) | −0.0041 (9) |
| C6 | 0.0494 (12) | 0.0315 (10) | 0.0370 (11) | 0.0048 (9) | −0.0043 (9) | 0.0042 (9) |
| C7 | 0.0354 (11) | 0.0333 (10) | 0.0348 (11) | −0.0016 (8) | −0.0007 (8) | 0.0009 (9) |
| C8 | 0.0646 (15) | 0.0563 (14) | 0.0402 (13) | 0.0030 (11) | −0.0105 (11) | 0.0007 (11) |
| O3 | 0.0705 (10) | 0.0363 (8) | 0.0427 (9) | −0.0050 (7) | −0.0184 (8) | −0.0008 (6) |
| O4 | 0.0650 (10) | 0.0293 (7) | 0.0386 (9) | −0.0066 (6) | −0.0096 (7) | 0.0046 (6) |
| O5 | 0.0765 (11) | 0.0278 (7) | 0.0379 (8) | −0.0054 (7) | −0.0081 (7) | 0.0019 (6) |
| O6 | 0.0857 (11) | 0.0329 (8) | 0.0343 (9) | −0.0044 (7) | −0.0164 (8) | −0.0001 (6) |
| C9 | 0.0458 (12) | 0.0257 (9) | 0.0345 (11) | 0.0045 (8) | −0.0006 (9) | −0.0040 (8) |
| C10 | 0.0511 (12) | 0.0289 (10) | 0.0346 (11) | 0.0007 (9) | −0.0014 (9) | −0.0016 (8) |
| O2W | 0.074 (3) | 0.0401 (12) | 0.0453 (15) | −0.0055 (13) | 0.0009 (14) | −0.0065 (9) |
| O21W | 0.15 (4) | 0.067 (10) | 0.078 (16) | 0.022 (14) | −0.04 (2) | −0.021 (9) |
| O1—C4 | 1.361 (2) | C5—C6 | 1.370 (3) |
| O1—C8 | 1.427 (2) | C5—H5 | 0.9300 |
| N1—C7 | 1.317 (3) | C6—H6 | 0.9300 |
| N1—H1A | 0.92 (3) | C8—H8A | 0.9696 |
| N1—H1B | 0.92 (2) | C8—H8B | 0.9697 |
| N2—C7 | 1.302 (2) | C8—H8C | 0.9696 |
| N2—H2A | 0.86 (2) | O3—C9 | 1.209 (2) |
| N2—H2B | 0.88 (2) | O4—C9 | 1.300 (2) |
| C1—C2 | 1.383 (3) | O4—H4 | 1.02 (3) |
| C1—C6 | 1.393 (3) | O5—C10 | 1.260 (2) |
| C1—C7 | 1.470 (3) | O6—C10 | 1.234 (2) |
| C2—C3 | 1.385 (3) | C9—C10 | 1.549 (3) |
| C2—H2 | 0.9300 | O2W—O21W | 0.92 (8) |
| C3—C4 | 1.383 (3) | O2W—H21W | 0.854 (17) |
| C3—H3 | 0.9300 | O2W—H22W | 0.883 (17) |
| C4—C5 | 1.382 (3) | O21W—H22W | 1.20 (6) |
| C4—O1—C8 | 118.00 (16) | C5—C6—H6 | 119.5 |
| C7—N1—H1A | 121.5 (18) | C1—C6—H6 | 119.5 |
| C7—N1—H1B | 120.6 (14) | N2—C7—N1 | 119.1 (2) |
| H1A—N1—H1B | 118 (2) | N2—C7—C1 | 120.56 (18) |
| C7—N2—H2A | 121.0 (15) | N1—C7—C1 | 120.28 (18) |
| C7—N2—H2B | 123.3 (14) | O1—C8—H8A | 109.5 |
| H2A—N2—H2B | 116 (2) | O1—C8—H8B | 109.5 |
| C2—C1—C6 | 117.90 (17) | H8A—C8—H8B | 109.5 |
| C2—C1—C7 | 121.50 (17) | O1—C8—H8C | 109.5 |
| C6—C1—C7 | 120.59 (17) | H8A—C8—H8C | 109.5 |
| C1—C2—C3 | 121.65 (18) | H8B—C8—H8C | 109.5 |
| C1—C2—H2 | 119.2 | C9—O4—H4 | 111.6 (15) |
| C3—C2—H2 | 119.2 | O3—C9—O4 | 124.20 (18) |
| C4—C3—C2 | 119.22 (18) | O3—C9—C10 | 121.61 (17) |
| C4—C3—H3 | 120.4 | O4—C9—C10 | 114.18 (17) |
| C2—C3—H3 | 120.4 | O6—C10—O5 | 126.03 (18) |
| O1—C4—C5 | 115.88 (17) | O6—C10—C9 | 118.28 (16) |
| O1—C4—C3 | 124.32 (18) | O5—C10—C9 | 115.68 (17) |
| C5—C4—C3 | 119.80 (18) | O21W—O2W—H21W | 161 (2) |
| C6—C5—C4 | 120.39 (18) | O21W—O2W—H22W | 83 (2) |
| C6—C5—H5 | 119.8 | H21W—O2W—H22W | 109 (3) |
| C4—C5—H5 | 119.8 | O2W—O21W—H22W | 47 (3) |
| C5—C6—C1 | 121.01 (18) | ||
| C6—C1—C2—C3 | 0.9 (3) | C2—C1—C6—C5 | −1.6 (3) |
| C7—C1—C2—C3 | −178.30 (18) | C7—C1—C6—C5 | 177.63 (18) |
| C1—C2—C3—C4 | 0.7 (3) | C2—C1—C7—N2 | −165.77 (19) |
| C8—O1—C4—C5 | −176.59 (18) | C6—C1—C7—N2 | 15.0 (3) |
| C8—O1—C4—C3 | 3.7 (3) | C2—C1—C7—N1 | 15.5 (3) |
| C2—C3—C4—O1 | 177.98 (18) | C6—C1—C7—N1 | −163.68 (19) |
| C2—C3—C4—C5 | −1.7 (3) | O3—C9—C10—O6 | 164.7 (2) |
| O1—C4—C5—C6 | −178.67 (17) | O4—C9—C10—O6 | −14.1 (3) |
| C3—C4—C5—C6 | 1.1 (3) | O3—C9—C10—O5 | −13.9 (3) |
| C4—C5—C6—C1 | 0.6 (3) | O4—C9—C10—O5 | 167.33 (17) |
| H··· | ||||
| N1—H1 | 0.92 (3) | 2.43 (3) | 3.180 (3) | 138 (2) |
| N1—H1 | 0.92 (2) | 2.00 (2) | 2.891 (3) | 161 (2) |
| N1—H1 | 0.92 (3) | 2.37 (3) | 3.096 (2) | 135 (2) |
| N2—H2 | 0.86 (2) | 2.05 (2) | 2.869 (2) | 159 (2) |
| N2—H2 | 0.86 (2) | 2.34 (2) | 2.827 (2) | 116.4 (18) |
| N2—H2 | 0.88 (2) | 2.09 (3) | 2.932 (2) | 159.5 (19) |
| O4—H4···O5i | 1.02 (3) | 1.56 (3) | 2.5840 (19) | 178 (2) |
| O2 | 0.85 (2) | 2.15 (2) | 2.976 (6) | 163 (3) |
| O2 | 0.88 (2) | 1.97 (2) | 2.853 (3) | 177 (3) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.92 (3) | 2.43 (3) | 3.180 (3) | 138 (2) |
| N1—H1 | 0.92 (2) | 2.00 (2) | 2.891 (3) | 161 (2) |
| N1—H1 | 0.92 (3) | 2.37 (3) | 3.096 (2) | 135 (2) |
| N2—H2 | 0.86 (2) | 2.05 (2) | 2.869 (2) | 159 (2) |
| N2—H2 | 0.86 (2) | 2.34 (2) | 2.827 (2) | 116.4 (18) |
| N2—H2 | 0.88 (2) | 2.09 (3) | 2.932 (2) | 159.5 (19) |
| O4—H4⋯O5i | 1.02 (3) | 1.56 (3) | 2.5840 (19) | 178 (2) |
| O2 | 0.85 (2) | 2.15 (2) | 2.976 (6) | 163 (3) |
| O2 | 0.88 (2) | 1.97 (2) | 2.853 (3) | 177 (3) |
Symmetry codes: (i) ; (ii) ; (iii) .