Literature DB >> 21581932

Redetermination of 2,6-dimethoxy-benzoic acid.

Gustavo Portalone1.   

Abstract

The crystal structure of the title compound, C(9)H(10)O(4), was first reported by Swaminathan, Vimala & Lotter [Acta Cryst. (1976), B32, 1897-1900]. It has been re-examined, improving the precision of the derived geometric parameters. The asymmetric unit comprises a non-planar independent mol-ecule, as the meth-oxy substituents force the carb-oxy group to be twisted away from the plane of the aromatic ring by 56.12 (9)°. Due to the anti-planar conformation adopted by the OH group, the mol-ecular components do not form the conventional dimeric units, but are associated in the crystal in chains stabilized by linear O-H⋯O hydrogen bonds, involving the OH groups and the carbonyl O atoms, which form C(3) motifs.

Entities:  

Year:  2009        PMID: 21581932      PMCID: PMC2968263          DOI: 10.1107/S1600536809001408

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For previous structure determinations, see: Swaminathan et al. (1976 ▶); Bryan & White (1982 ▶). For related literature, see: Gopalakrishna & Cartz, 1972 ▶; Leiserowitz, 1976 ▶; Byriel et al., 1991 ▶; Chen et al., 2007 ▶. For computation of ring patterns formed by hydrogen bonds in crystal structures, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶); Motherwell et al. (1999 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C9H10O4 M = 182.17 Orthorhombic, a = 7.12255 (13) Å b = 8.92296 (15) Å c = 13.79430 (18) Å V = 876.69 (2) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 298 (2) K 0.12 × 0.10 × 0.10 mm

Data collection

Oxford Diffraction Xcalibur S CCD diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006 ▶) T min = 0.967, T max = 0.999 234729 measured reflections 1246 independent reflections 1241 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.110 S = 1.25 1246 reflections 129 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2006 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2006 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809001408/kp2203sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809001408/kp2203Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H10O4F(000) = 384
Mr = 182.17Dx = 1.380 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 75565 reflections
a = 7.12255 (13) Åθ = 2.7–32.6°
b = 8.92296 (15) ŵ = 0.11 mm1
c = 13.79430 (18) ÅT = 298 K
V = 876.69 (2) Å3Tablets, colourless
Z = 40.12 × 0.10 × 0.10 mm
Oxford Diffraction Xcalibur S CCD diffractometer1246 independent reflections
Radiation source: Enhance (Mo) X-ray Source1241 reflections with I > 2σ(I)
graphiteRint = 0.039
Detector resolution: 16.0696 pixels mm-1θmax = 28.0°, θmin = 2.7°
ω and φ scansh = −9→9
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2006)k = −11→11
Tmin = 0.967, Tmax = 0.999l = −18→18
234729 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H atoms treated by a mixture of independent and constrained refinement
S = 1.25w = 1/[σ2(Fo2) + (0.059P)2 + 0.1016P] where P = (Fo2 + 2Fc2)/3
1246 reflections(Δ/σ)max < 0.001
129 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.20 e Å3
Experimental. CrysAlis RED (Oxford Diffraction, 2008) Version 1.171.32.15 (release 10-01-2008 CrysAlis171 .NET) (compiled Jan 10 2008,16:37:18) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.0502 (3)0.05267 (15)0.21547 (10)0.0450 (4)
O2−0.0480 (3)−0.18967 (17)0.19834 (12)0.0488 (4)
H2−0.005 (6)−0.272 (4)0.224 (2)0.080 (11)*
O30.3469 (2)−0.20799 (17)0.23289 (11)0.0456 (4)
O4−0.1001 (2)0.03782 (19)0.42166 (10)0.0523 (4)
C10.1298 (3)−0.08417 (18)0.33092 (12)0.0313 (4)
C20.3031 (3)−0.1561 (2)0.32308 (14)0.0357 (4)
C30.4215 (3)−0.1652 (3)0.40281 (17)0.0499 (5)
H30.5420−0.21520.39770.067 (8)*
C40.3658 (4)−0.1025 (3)0.48919 (17)0.0561 (6)
H40.4487−0.10920.54480.077 (9)*
C50.1956 (4)−0.0304 (3)0.49927 (14)0.0501 (6)
H50.16050.01440.56070.050 (7)*
C60.0752 (3)−0.0228 (2)0.42020 (13)0.0379 (4)
C70.0046 (3)−0.06772 (19)0.24441 (13)0.0324 (4)
C80.4849 (4)−0.3237 (3)0.2261 (2)0.0635 (7)
H8A0.609−0.28230.24150.095*
H8B0.486−0.3640.16000.095*
H8C0.4545−0.40400.27220.095*
C9−0.1665 (5)0.1023 (4)0.5097 (2)0.0737 (9)
H9A−0.0880.1860.52710.111*
H9B−0.1630.02840.56030.111*
H9C−0.2930.1360.50100.111*
U11U22U33U12U13U23
O10.0636 (10)0.0332 (7)0.0383 (7)0.0092 (7)−0.0096 (7)0.0031 (6)
O20.0596 (9)0.0361 (8)0.0508 (8)0.0029 (7)−0.0232 (8)−0.0080 (7)
O30.0458 (8)0.0453 (8)0.0458 (8)0.0111 (7)0.0029 (7)−0.0009 (7)
O40.0604 (10)0.0590 (9)0.0374 (7)0.0120 (8)0.0070 (7)−0.0056 (7)
C10.0411 (9)0.0241 (7)0.0287 (7)−0.0036 (7)−0.0042 (7)0.0020 (6)
C20.0387 (9)0.0293 (8)0.0392 (9)−0.0036 (7)−0.0016 (8)0.0048 (7)
C30.0438 (11)0.0493 (11)0.0566 (12)−0.0013 (10)−0.0146 (10)0.0096 (10)
C40.0653 (15)0.0587 (13)0.0442 (11)−0.0136 (13)−0.0232 (11)0.0081 (11)
C50.0726 (16)0.0481 (11)0.0297 (9)−0.0132 (11)−0.0051 (10)0.0000 (9)
C60.0495 (11)0.0309 (8)0.0333 (8)−0.0061 (8)0.0014 (8)0.0026 (7)
C70.0379 (8)0.0299 (8)0.0295 (7)0.0028 (7)−0.0014 (7)0.0002 (7)
C80.0588 (14)0.0612 (15)0.0704 (16)0.0217 (13)0.0115 (14)0.0042 (14)
C90.083 (2)0.0840 (19)0.0544 (14)0.0126 (18)0.0152 (15)−0.0216 (14)
O1—C71.211 (2)C3—H30.9700
O2—C71.314 (2)C4—C51.379 (4)
O2—H20.87 (4)C4—H40.9700
O3—C21.364 (2)C5—C61.389 (3)
O3—C81.429 (3)C5—H50.9700
O4—C61.361 (3)C8—H8A0.9819
O4—C91.424 (3)C8—H8B0.9819
C1—C21.395 (3)C8—H8C0.9819
C1—C61.403 (2)C9—H9A0.9607
C1—C71.497 (2)C9—H9B0.9607
C2—C31.388 (3)C9—H9C0.9607
C3—C41.375 (4)
C7—O2—H2114 (2)O4—C6—C5125.03 (19)
C2—O3—C8117.56 (18)O4—C6—C1114.99 (17)
C6—O4—C9118.6 (2)C5—C6—C1120.0 (2)
C2—C1—C6119.51 (17)O1—C7—O2118.91 (17)
C2—C1—C7120.69 (16)O1—C7—C1122.81 (16)
C6—C1—C7119.77 (17)O2—C7—C1118.28 (15)
O3—C2—C3124.32 (19)O3—C8—H8A109.5
O3—C2—C1115.42 (16)O3—C8—H8B109.5
C3—C2—C1120.20 (18)H8A—C8—H8B109.5
C4—C3—C2119.2 (2)O3—C8—H8C109.5
C4—C3—H3120.4H8A—C8—H8C109.5
C2—C3—H3120.4H8B—C8—H8C109.5
C3—C4—C5122.1 (2)O4—C9—H9A109.5
C3—C4—H4119.0O4—C9—H9B109.5
C5—C4—H4119.0H9A—C9—H9B109.5
C4—C5—C6119.1 (2)O4—C9—H9C109.5
C4—C5—H5120.5H9A—C9—H9C109.5
C6—C5—H5120.5H9B—C9—H9C109.5
C8—O3—C2—C323.9 (3)C9—O4—C6—C1179.9 (2)
C8—O3—C2—C1−159.0 (2)C4—C5—C6—O4176.4 (2)
C6—C1—C2—O3−177.98 (16)C4—C5—C6—C1−1.9 (3)
C7—C1—C2—O30.1 (2)C2—C1—C6—O4−176.68 (16)
C6—C1—C2—C3−0.7 (3)C7—C1—C6—O45.2 (2)
C7—C1—C2—C3177.33 (18)C2—C1—C6—C51.7 (3)
O3—C2—C3—C4176.9 (2)C7—C1—C6—C5−176.37 (17)
C1—C2—C3—C4−0.1 (3)C2—C1—C7—O1−122.8 (2)
C2—C3—C4—C5−0.1 (4)C6—C1—C7—O155.3 (3)
C3—C4—C5—C61.0 (4)C2—C1—C7—O257.4 (3)
C9—O4—C6—C51.6 (3)C6—C1—C7—O2−124.5 (2)
D—H···AD—HH···AD···AD—H···A
O2—H2···O1i0.87 (4)1.82 (4)2.681 (2)172 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O1i0.87 (4)1.82 (4)2.681 (2)172 (4)

Symmetry code: (i) .

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Authors: 
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