Literature DB >> 24914151

Transmission electron microscopy as a tool for nanocrystal characterization pre- and post-injector.

H P Stevenson1, D P DePonte2, A M Makhov1, James F Conway1, O B Zeldin3, S Boutet2, G Calero4, A E Cohen5.   

Abstract

Recent advancements at the Linac Coherent Light Source X-ray free-electron laser (XFEL) enabling successful serial femtosecond diffraction experiments using nanometre-sized crystals (NCs) have opened up the possibility of X-ray structure determination of proteins that produce only submicrometre crystals such as many membrane proteins. Careful crystal pre-characterization including compatibility testing of the sample delivery method is essential to ensure efficient use of the limited beamtime available at XFEL sources. This work demonstrates the utility of transmission electron microscopy for detecting and evaluating NCs within the carrier solutions of liquid injectors. The diffraction quality of these crystals may be assessed by examining the crystal lattice and by calculating the fast Fourier transform of the image. Injector reservoir solutions, as well as solutions collected post-injection, were evaluated for three types of protein NCs (i) the membrane protein PTHR1, (ii) the multi-protein complex Pol II-GFP and (iii) the soluble protein lysozyme. Our results indicate that the concentration and diffraction quality of NCs, particularly those with high solvent content and sensitivity to mechanical manipulation may be affected by the delivery process.
© 2014 The Author(s) Published by the Royal Society. All rights reserved.

Entities:  

Keywords:  crystal characterization; crystal injector; crystallography; femtosecond diffraction; sample delivery; transmission electron microscopy (TEM)

Mesh:

Substances:

Year:  2014        PMID: 24914151      PMCID: PMC4052860          DOI: 10.1098/rstb.2013.0322

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  18 in total

1.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

2.  SEM imaging of liquid jets.

Authors:  Daniel P DePonte; R B Doak; Mark Hunter; Zhenquan Liu; U Weierstall; John C H Spence
Journal:  Micron       Date:  2008-12-30       Impact factor: 2.251

3.  Nanoflow electrospinning serial femtosecond crystallography.

Authors:  Raymond G Sierra; Hartawan Laksmono; Jan Kern; Rosalie Tran; Johan Hattne; Roberto Alonso-Mori; Benedikt Lassalle-Kaiser; Carina Glöckner; Julia Hellmich; Donald W Schafer; Nathaniel Echols; Richard J Gildea; Ralf W Grosse-Kunstleve; Jonas Sellberg; Trevor A McQueen; Alan R Fry; Marc M Messerschmidt; Alan Miahnahri; M Marvin Seibert; Christina Y Hampton; Dmitri Starodub; N Duane Loh; Dimosthenis Sokaras; Tsu-Chien Weng; Petrus H Zwart; Pieter Glatzel; Despina Milathianaki; William E White; Paul D Adams; Garth J Williams; Sébastien Boutet; Athina Zouni; Johannes Messinger; Nicholas K Sauter; Uwe Bergmann; Junko Yano; Vittal K Yachandra; Michael J Bogan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-10-18

4.  Use of transmission electron microscopy to identify nanocrystals of challenging protein targets.

Authors:  Hilary P Stevenson; Alexander M Makhov; Monica Calero; Andrea L Edwards; Oliver B Zeldin; Irimpan I Mathews; Guowu Lin; Christopher O Barnes; Hugo Santamaria; Ted M Ross; S Michael Soltis; Chaitan Khosla; V Nagarajan; James F Conway; Aina E Cohen; Guillermo Calero
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-28       Impact factor: 11.205

5.  Simultaneous femtosecond X-ray spectroscopy and diffraction of photosystem II at room temperature.

Authors:  Jan Kern; Roberto Alonso-Mori; Rosalie Tran; Johan Hattne; Richard J Gildea; Nathaniel Echols; Carina Glöckner; Julia Hellmich; Hartawan Laksmono; Raymond G Sierra; Benedikt Lassalle-Kaiser; Sergey Koroidov; Alyssa Lampe; Guangye Han; Sheraz Gul; Dörte Difiore; Despina Milathianaki; Alan R Fry; Alan Miahnahri; Donald W Schafer; Marc Messerschmidt; M Marvin Seibert; Jason E Koglin; Dimosthenis Sokaras; Tsu-Chien Weng; Jonas Sellberg; Matthew J Latimer; Ralf W Grosse-Kunstleve; Petrus H Zwart; William E White; Pieter Glatzel; Paul D Adams; Michael J Bogan; Garth J Williams; Sébastien Boutet; Johannes Messinger; Athina Zouni; Nicholas K Sauter; Vittal K Yachandra; Uwe Bergmann; Junko Yano
Journal:  Science       Date:  2013-02-14       Impact factor: 47.728

Review 6.  Toward structure determination using membrane-protein nanocrystals and microcrystals.

Authors:  Mark S Hunter; Petra Fromme
Journal:  Methods       Date:  2011-12-22       Impact factor: 3.608

7.  Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser.

Authors:  Lukas Lomb; Thomas R M Barends; Stephan Kassemeyer; Andrew Aquila; Sascha W Epp; Benjamin Erk; Lutz Foucar; Robert Hartmann; Benedikt Rudek; Daniel Rolles; Artem Rudenko; Robert L Shoeman; Jakob Andreasson; Sasa Bajt; Miriam Barthelmess; Anton Barty; Michael J Bogan; Christoph Bostedt; John D Bozek; Carl Caleman; Ryan Coffee; Nicola Coppola; Daniel P Deponte; R Bruce Doak; Tomas Ekeberg; Holger Fleckenstein; Petra Fromme; Maike Gebhardt; Heinz Graafsma; Lars Gumprecht; Christina Y Hampton; Andreas Hartmann; Günter Hauser; Helmut Hirsemann; Peter Holl; James M Holton; Mark S Hunter; Wolfgang Kabsch; Nils Kimmel; Richard A Kirian; Mengning Liang; Filipe R N C Maia; Anton Meinhart; Stefano Marchesini; Andrew V Martin; Karol Nass; Christian Reich; Joachim Schulz; M Marvin Seibert; Raymond Sierra; Heike Soltau; John C H Spence; Jan Steinbrener; Francesco Stellato; Stephan Stern; Nicusor Timneanu; Xiaoyu Wang; Georg Weidenspointner; Uwe Weierstall; Thomas A White; Cornelia Wunderer; Henry N Chapman; Joachim Ullrich; Lothar Strüder; Ilme Schlichting
Journal:  Phys Rev B Condens Matter Mater Phys       Date:  2011-12-01

8.  Cloning, expression and two-step purification of recombinant His-tag enhanced green fluorescent protein over-expressed in Escherichia coli.

Authors:  W Dieryck; A M Noubhani; D Coulon; X Santarelli
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2003-03-25       Impact factor: 3.205

9.  A general path for large-scale solubilization of cellular proteins: from membrane receptors to multiprotein complexes.

Authors:  Filippo Pullara; Jennifer Guerrero-Santoro; Monica Calero; Qiangmin Zhang; Ye Peng; Henrik Spåhr; Guy L Kornberg; Antonella Cusimano; Hilary P Stevenson; Hugo Santamaria-Suarez; Shelley L Reynolds; Ian S Brown; Satdarshan P S Monga; Bennett Van Houten; Vesna Rapić-Otrin; Guillermo Calero; Arthur S Levine
Journal:  Protein Expr Purif       Date:  2012-11-05       Impact factor: 1.650

10.  New Python-based methods for data processing.

Authors:  Nicholas K Sauter; Johan Hattne; Ralf W Grosse-Kunstleve; Nathaniel Echols
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-18
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  11 in total

1.  Goniometer-based femtosecond crystallography with X-ray free electron lasers.

Authors:  Aina E Cohen; S Michael Soltis; Ana González; Laura Aguila; Roberto Alonso-Mori; Christopher O Barnes; Elizabeth L Baxter; Winnie Brehmer; Aaron S Brewster; Axel T Brunger; Guillermo Calero; Joseph F Chang; Matthieu Chollet; Paul Ehrensberger; Thomas L Eriksson; Yiping Feng; Johan Hattne; Britt Hedman; Michael Hollenbeck; James M Holton; Stephen Keable; Brian K Kobilka; Elena G Kovaleva; Andrew C Kruse; Henrik T Lemke; Guowu Lin; Artem Y Lyubimov; Aashish Manglik; Irimpan I Mathews; Scott E McPhillips; Silke Nelson; John W Peters; Nicholas K Sauter; Clyde A Smith; Jinhu Song; Hilary P Stevenson; Yingssu Tsai; Monarin Uervirojnangkoorn; Vladimir Vinetsky; Soichi Wakatsuki; William I Weis; Oleg A Zadvornyy; Oliver B Zeldin; Diling Zhu; Keith O Hodgson
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-31       Impact factor: 11.205

2.  The birth of a new field.

Authors:  John C H Spence; Henry N Chapman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

3.  Transmission electron microscopy for the evaluation and optimization of crystal growth.

Authors:  Hilary P Stevenson; Guowu Lin; Christopher O Barnes; Ieva Sutkeviciute; Troy Krzysiak; Simon C Weiss; Shelley Reynolds; Ying Wu; Veeranagu Nagarajan; Alexander M Makhov; Robert Lawrence; Emily Lamm; Lisa Clark; Timothy J Gardella; Brenda G Hogue; Craig M Ogata; Jinwoo Ahn; Angela M Gronenborn; James F Conway; Jean Pierre Vilardaga; Aina E Cohen; Guillermo Calero
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-04-26       Impact factor: 7.652

4.  Transcription with a laser: Radiation-damage-free diffraction of RNA Polymerase II crystals.

Authors:  Guowu Lin; Simon C Weiss; Sandra Vergara; Carlos Camacho; Guillermo Calero
Journal:  Methods       Date:  2019-04-25       Impact factor: 3.608

5.  The Conformational Flexibility of the Acyltransferase from the Disorazole Polyketide Synthase Is Revealed by an X-ray Free-Electron Laser Using a Room-Temperature Sample Delivery Method for Serial Crystallography.

Authors:  Irimpan I Mathews; Kim Allison; Thomas Robbins; Artem Y Lyubimov; Monarin Uervirojnangkoorn; Axel T Brunger; Chaitan Khosla; Hasan DeMirci; Scott E McPhillips; Michael Hollenbeck; Michael Soltis; Aina E Cohen
Journal:  Biochemistry       Date:  2017-08-31       Impact factor: 3.162

6.  Serial femtosecond crystallography opens new avenues for Structural Biology.

Authors:  Jesse Coe; Petra Fromme
Journal:  Protein Pept Lett       Date:  2016       Impact factor: 1.890

Review 7.  Assessment of microcrystal quality by transmission electron microscopy for efficient serial femtosecond crystallography.

Authors:  Christopher O Barnes; Elena G Kovaleva; Xiaofeng Fu; Hilary P Stevenson; Aaron S Brewster; Daniel P DePonte; Elizabeth L Baxter; Aina E Cohen; Guillermo Calero
Journal:  Arch Biochem Biophys       Date:  2016-03-02       Impact factor: 4.013

Review 8.  Serial femtosecond crystallography: A revolution in structural biology.

Authors:  Jose M Martin-Garcia; Chelsie E Conrad; Jesse Coe; Shatabdi Roy-Chowdhury; Petra Fromme
Journal:  Arch Biochem Biophys       Date:  2016-04-30       Impact factor: 4.013

9.  Raster-scanning serial protein crystallography using micro- and nano-focused synchrotron beams.

Authors:  Nicolas Coquelle; Aaron S Brewster; Ulrike Kapp; Anastasya Shilova; Britta Weinhausen; Manfred Burghammer; Jacques Philippe Colletier
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-04-25

10.  Capture and X-ray diffraction studies of protein microcrystals in a microfluidic trap array.

Authors:  Artem Y Lyubimov; Thomas D Murray; Antoine Koehl; Ismail Emre Araci; Monarin Uervirojnangkoorn; Oliver B Zeldin; Aina E Cohen; S Michael Soltis; Elizabeth L Baxter; Aaron S Brewster; Nicholas K Sauter; Axel T Brunger; James M Berger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-03-27
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