Literature DB >> 21190672

X-ray diffraction from membrane protein nanocrystals.

M S Hunter1, D P DePonte, D A Shapiro, R A Kirian, X Wang, D Starodub, S Marchesini, U Weierstall, R B Doak, J C H Spence, P Fromme.   

Abstract

Membrane proteins constitute > 30% of the proteins in an average cell, and yet the number of currently known structures of unique membrane proteins is < 300. To develop new concepts for membrane protein structure determination, we have explored the serial nanocrystallography method, in which fully hydrated protein nanocrystals are delivered to an x-ray beam within a liquid jet at room temperature. As a model system, we have collected x-ray powder diffraction data from the integral membrane protein Photosystem I, which consists of 36 subunits and 381 cofactors. Data were collected from crystals ranging in size from 100 nm to 2 μm. The results demonstrate that there are membrane protein crystals that contain < 100 unit cells (200 total molecules) and that 3D crystals of membrane proteins, which contain < 200 molecules, may be suitable for structural investigation. Serial nanocrystallography overcomes the problem of x-ray damage, which is currently one of the major limitations for x-ray structure determination of small crystals. By combining serial nanocrystallography with x-ray free-electron laser sources in the future, it may be possible to produce molecular-resolution electron-density maps using membrane protein crystals that contain only a few hundred or thousand unit cells.
Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21190672      PMCID: PMC3010013          DOI: 10.1016/j.bpj.2010.10.049

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  28 in total

1.  Photosystem I, an improved model of the stromal subunits PsaC, PsaD, and PsaE.

Authors:  O Klukas; W D Schubert; P Jordan; N Krauss; P Fromme; H T Witt; W Saenger
Journal:  J Biol Chem       Date:  1999-03-12       Impact factor: 5.157

2.  Three-dimensional structure of cyanobacterial photosystem I at 2.5 A resolution.

Authors:  P Jordan; P Fromme; H T Witt; O Klukas; W Saenger; N Krauss
Journal:  Nature       Date:  2001-06-21       Impact factor: 49.962

3.  Potential for biomolecular imaging with femtosecond X-ray pulses.

Authors:  R Neutze; R Wouts; D van der Spoel; E Weckert; J Hajdu
Journal:  Nature       Date:  2000-08-17       Impact factor: 49.962

4.  An atypical haem in the cytochrome b(6)f complex.

Authors:  David Stroebel; Yves Choquet; Jean-Luc Popot; Daniel Picot
Journal:  Nature       Date:  2003-11-27       Impact factor: 49.962

5.  Structure of the cytochrome b6f complex of oxygenic photosynthesis: tuning the cavity.

Authors:  Genji Kurisu; Huamin Zhang; Janet L Smith; William A Cramer
Journal:  Science       Date:  2003-10-02       Impact factor: 47.728

6.  A monoclonal antibody for G protein-coupled receptor crystallography.

Authors:  Peter W Day; Søren G F Rasmussen; Charles Parnot; Juan José Fung; Asna Masood; Tong Sun Kobilka; Xiao-Jie Yao; Hee-Jung Choi; William I Weis; Daniel K Rohrer; Brian K Kobilka
Journal:  Nat Methods       Date:  2007-10-21       Impact factor: 28.547

7.  Powder crystallography on macromolecules.

Authors:  I Margiolaki; J P Wright
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 8.  Small is beautiful: protein micro-crystallography.

Authors:  S Cusack; H Belrhali; A Bram; M Burghammer; A Perrakis; C Riekel
Journal:  Nat Struct Biol       Date:  1998-08

9.  Photosystem I at 4 A resolution represents the first structural model of a joint photosynthetic reaction centre and core antenna system.

Authors:  N Krauss; W D Schubert; O Klukas; P Fromme; H T Witt; W Saenger
Journal:  Nat Struct Biol       Date:  1996-11

10.  Femtosecond protein nanocrystallography-data analysis methods.

Authors:  Richard A Kirian; Xiaoyu Wang; Uwe Weierstall; Kevin E Schmidt; John C H Spence; Mark Hunter; Petra Fromme; Thomas White; Henry N Chapman; James Holton
Journal:  Opt Express       Date:  2010-03-15       Impact factor: 3.894

View more
  19 in total

1.  Room temperature femtosecond X-ray diffraction of photosystem II microcrystals.

Authors:  Jan Kern; Roberto Alonso-Mori; Julia Hellmich; Rosalie Tran; Johan Hattne; Hartawan Laksmono; Carina Glöckner; Nathaniel Echols; Raymond G Sierra; Jonas Sellberg; Benedikt Lassalle-Kaiser; Richard J Gildea; Pieter Glatzel; Ralf W Grosse-Kunstleve; Matthew J Latimer; Trevor A McQueen; Dörte DiFiore; Alan R Fry; Marc Messerschmidt; Alan Miahnahri; Donald W Schafer; M Marvin Seibert; Dimosthenis Sokaras; Tsu-Chien Weng; Petrus H Zwart; William E White; Paul D Adams; Michael J Bogan; Sébastien Boutet; Garth J Williams; Johannes Messinger; Nicholas K Sauter; Athina Zouni; Uwe Bergmann; Junko Yano; Vittal K Yachandra
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-04       Impact factor: 11.205

Review 2.  Femtosecond nanocrystallography using X-ray lasers for membrane protein structure determination.

Authors:  Petra Fromme; John C H Spence
Journal:  Curr Opin Struct Biol       Date:  2011-08       Impact factor: 6.809

3.  Precise Manipulation and Patterning of Protein Crystals for Macromolecular Crystallography Using Surface Acoustic Waves.

Authors:  Feng Guo; Weijie Zhou; Peng Li; Zhangming Mao; Neela H Yennawar; Jarrod B French; Tony Jun Huang
Journal:  Small       Date:  2015-02-01       Impact factor: 13.281

4.  Use of transmission electron microscopy to identify nanocrystals of challenging protein targets.

Authors:  Hilary P Stevenson; Alexander M Makhov; Monica Calero; Andrea L Edwards; Oliver B Zeldin; Irimpan I Mathews; Guowu Lin; Christopher O Barnes; Hugo Santamaria; Ted M Ross; S Michael Soltis; Chaitan Khosla; V Nagarajan; James F Conway; Aina E Cohen; Guillermo Calero
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-28       Impact factor: 11.205

5.  Dielectrophoretic sorting of membrane protein nanocrystals.

Authors:  Bahige G Abdallah; Tzu-Chiao Chao; Christopher Kupitz; Petra Fromme; Alexandra Ros
Journal:  ACS Nano       Date:  2013-09-09       Impact factor: 15.881

6.  Serial femtosecond crystallography opens new avenues for Structural Biology.

Authors:  Jesse Coe; Petra Fromme
Journal:  Protein Pept Lett       Date:  2016       Impact factor: 1.890

7.  Simultaneous femtosecond X-ray spectroscopy and diffraction of photosystem II at room temperature.

Authors:  Jan Kern; Roberto Alonso-Mori; Rosalie Tran; Johan Hattne; Richard J Gildea; Nathaniel Echols; Carina Glöckner; Julia Hellmich; Hartawan Laksmono; Raymond G Sierra; Benedikt Lassalle-Kaiser; Sergey Koroidov; Alyssa Lampe; Guangye Han; Sheraz Gul; Dörte Difiore; Despina Milathianaki; Alan R Fry; Alan Miahnahri; Donald W Schafer; Marc Messerschmidt; M Marvin Seibert; Jason E Koglin; Dimosthenis Sokaras; Tsu-Chien Weng; Jonas Sellberg; Matthew J Latimer; Ralf W Grosse-Kunstleve; Petrus H Zwart; William E White; Pieter Glatzel; Paul D Adams; Michael J Bogan; Garth J Williams; Sébastien Boutet; Johannes Messinger; Athina Zouni; Nicholas K Sauter; Vittal K Yachandra; Uwe Bergmann; Junko Yano
Journal:  Science       Date:  2013-02-14       Impact factor: 47.728

Review 8.  Toward structure determination using membrane-protein nanocrystals and microcrystals.

Authors:  Mark S Hunter; Petra Fromme
Journal:  Methods       Date:  2011-12-22       Impact factor: 3.608

9.  Watching Proteins Function with Time-resolved X-ray Crystallography.

Authors:  Vukica Šrajer; Marius Schmidt
Journal:  J Phys D Appl Phys       Date:  2017-08-22       Impact factor: 3.207

10.  Crystallization of the large membrane protein complex photosystem I in a microfluidic channel.

Authors:  Bahige G Abdallah; Christopher Kupitz; Petra Fromme; Alexandra Ros
Journal:  ACS Nano       Date:  2013-11-14       Impact factor: 15.881

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.