Literature DB >> 22157955

Single-molecule studies reveal the function of a third polymerase in the replisome.

Roxana E Georgescu1, Isabel Kurth, Mike E O'Donnell.   

Abstract

The Escherichia coli replisome contains three polymerases, one more than necessary to duplicate the two parental strands. Using single-molecule studies, we reveal two advantages conferred by the third polymerase. First, dipolymerase replisomes are inefficient at synthesizing lagging strands, leaving single-strand gaps, whereas tripolymerase replisomes fill strands almost to completion. Second, tripolymerase replisomes are much more processive than dipolymerase replisomes. These features account for the unexpected three-polymerase-structure of bacterial replisomes.

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Year:  2011        PMID: 22157955      PMCID: PMC3721970          DOI: 10.1038/nsmb.2179

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  17 in total

1.  Two distinct triggers for cycling of the lagging strand polymerase at the replication fork.

Authors:  X Li; K J Marians
Journal:  J Biol Chem       Date:  2000-11-03       Impact factor: 5.157

Review 2.  Cellular DNA replicases: components and dynamics at the replication fork.

Authors:  Aaron Johnson; Mike O'Donnell
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

3.  The control mechanism for lagging strand polymerase recycling during bacteriophage T4 DNA replication.

Authors:  Jingsong Yang; Scott W Nelson; Stephen J Benkovic
Journal:  Mol Cell       Date:  2006-01-20       Impact factor: 17.970

4.  Long-distance lateral diffusion of human Rad51 on double-stranded DNA.

Authors:  Annette Granéli; Caitlyn C Yeykal; Ragan B Robertson; Eric C Greene
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-23       Impact factor: 11.205

5.  E. coli DNA replication in the absence of free β clamps.

Authors:  Nathan A Tanner; Gökhan Tolun; Joseph J Loparo; Slobodan Jergic; Jack D Griffith; Nicholas E Dixon; Antoine M van Oijen
Journal:  EMBO J       Date:  2011-03-25       Impact factor: 11.598

6.  Coupling of a replicative polymerase and helicase: a tau-DnaB interaction mediates rapid replication fork movement.

Authors:  S Kim; H G Dallmann; C S McHenry; K J Marians
Journal:  Cell       Date:  1996-02-23       Impact factor: 41.582

7.  The Escherichia coli DNA polymerase III holoenzyme contains both products of the dnaX gene, tau and gamma, but only tau is essential.

Authors:  A Blinkova; C Hervas; P T Stukenberg; R Onrust; M E O'Donnell; J R Walker
Journal:  J Bacteriol       Date:  1993-09       Impact factor: 3.490

8.  Efficient in vitro replication of double-stranded DNA templates by a purified T4 bacteriophage replication system.

Authors:  N K Sinha; C F Morris; B M Alberts
Journal:  J Biol Chem       Date:  1980-05-10       Impact factor: 5.157

9.  DNA polymerase II is encoded by the DNA damage-inducible dinA gene of Escherichia coli.

Authors:  C A Bonner; S Hays; K McEntee; M F Goodman
Journal:  Proc Natl Acad Sci U S A       Date:  1990-10       Impact factor: 11.205

10.  Coordinated leading- and lagging-strand synthesis at the Escherichia coli DNA replication fork. II. Frequency of primer synthesis and efficiency of primer utilization control Okazaki fragment size.

Authors:  E L Zechner; C A Wu; K J Marians
Journal:  J Biol Chem       Date:  1992-02-25       Impact factor: 5.157

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  49 in total

Review 1.  DNA replication fidelity in Escherichia coli: a multi-DNA polymerase affair.

Authors:  Iwona J Fijalkowska; Roel M Schaaper; Piotr Jonczyk
Journal:  FEMS Microbiol Rev       Date:  2012-04-05       Impact factor: 16.408

2.  Insights into Okazaki fragment synthesis by the T4 replisome: the fate of lagging-strand holoenzyme components and their influence on Okazaki fragment size.

Authors:  Danqi Chen; Hongjun Yue; Michelle M Spiering; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2013-05-31       Impact factor: 5.157

Review 3.  Replication-fork dynamics.

Authors:  Karl E Duderstadt; Rodrigo Reyes-Lamothe; Antoine M van Oijen; David J Sherratt
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-01-01       Impact factor: 10.005

4.  Fate of the replisome following arrest by UV-induced DNA damage in Escherichia coli.

Authors:  H Arthur Jeiranian; Brandy J Schalow; Charmain T Courcelle; Justin Courcelle
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-25       Impact factor: 11.205

5.  Bacterial and Eukaryotic Replisome Machines.

Authors:  Nina Yao; Mike O'Donnell
Journal:  JSM Biochem Mol Biol       Date:  2016-05-30

6.  RNA primer-primase complexes serve as the signal for polymerase recycling and Okazaki fragment initiation in T4 phage DNA replication.

Authors:  Michelle M Spiering; Philip Hanoian; Swathi Gannavaram; Stephen J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-15       Impact factor: 11.205

7.  Recycling of single-stranded DNA-binding protein by the bacterial replisome.

Authors:  Lisanne M Spenkelink; Jacob S Lewis; Slobodan Jergic; Zhi-Qiang Xu; Andrew Robinson; Nicholas E Dixon; Antoine M van Oijen
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

Review 8.  Molecular traffic jams on DNA.

Authors:  Ilya J Finkelstein; Eric C Greene
Journal:  Annu Rev Biophys       Date:  2013-02-28       Impact factor: 12.981

9.  Mechanism of asymmetric polymerase assembly at the eukaryotic replication fork.

Authors:  Roxana E Georgescu; Lance Langston; Nina Y Yao; Olga Yurieva; Dan Zhang; Jeff Finkelstein; Tani Agarwal; Mike E O'Donnell
Journal:  Nat Struct Mol Biol       Date:  2014-07-06       Impact factor: 15.369

Review 10.  New insights into replisome fluidity during chromosome replication.

Authors:  Isabel Kurth; Mike O'Donnell
Journal:  Trends Biochem Sci       Date:  2012-11-12       Impact factor: 13.807

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