Literature DB >> 23881939

Replication-fork dynamics.

Karl E Duderstadt1, Rodrigo Reyes-Lamothe, Antoine M van Oijen, David J Sherratt.   

Abstract

The proliferation of all organisms depends on the coordination of enzymatic events within large multiprotein replisomes that duplicate chromosomes. Whereas the structure and function of many core replisome components have been clarified, the timing and order of molecular events during replication remains obscure. To better understand the replication mechanism, new methods must be developed that allow for the observation and characterization of short-lived states and dynamic events at single replication forks. Over the last decade, great progress has been made toward this goal with the development of novel DNA nanomanipulation and fluorescence imaging techniques allowing for the direct observation of replication-fork dynamics both reconstituted in vitro and in live cells. This article reviews these new single-molecule approaches and the revised understanding of replisome operation that has emerged.

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Year:  2014        PMID: 23881939      PMCID: PMC3941221          DOI: 10.1101/cshperspect.a010157

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  114 in total

1.  DNA polymerase clamp shows little turnover at established replication sites but sequential de novo assembly at adjacent origin clusters.

Authors:  Anje Sporbert; Anja Gahl; Richard Ankerhold; Heinrich Leonhardt; M Cristina Cardoso
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Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

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Journal:  Biochemistry       Date:  2006-07-04       Impact factor: 3.162

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Authors:  Daniel S Johnson; Lu Bai; Benjamin Y Smith; Smita S Patel; Michelle D Wang
Journal:  Cell       Date:  2007-06-29       Impact factor: 41.582

5.  Template recognition and ribonucleotide specificity of the DNA primase of bacteriophage T7.

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Journal:  J Biol Chem       Date:  1997-02-28       Impact factor: 5.157

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Journal:  Cell       Date:  1999-01-08       Impact factor: 41.582

Review 7.  Regulation of the replication cycle: conserved and diverse regulatory systems for DnaA and oriC.

Authors:  Tsutomu Katayama; Shogo Ozaki; Kenji Keyamura; Kazuyuki Fujimitsu
Journal:  Nat Rev Microbiol       Date:  2010-03       Impact factor: 60.633

8.  Coordination of leading and lagging strand DNA synthesis at the replication fork of bacteriophage T7.

Authors:  Z Debyser; S Tabor; C C Richardson
Journal:  Cell       Date:  1994-04-08       Impact factor: 41.582

Review 9.  Mechanism and evolution of DNA primases.

Authors:  Robert D Kuchta; Gudrun Stengel
Journal:  Biochim Biophys Acta       Date:  2009-06-21

10.  ATP-induced helicase slippage reveals highly coordinated subunits.

Authors:  Bo Sun; Daniel S Johnson; Gayatri Patel; Benjamin Y Smith; Manjula Pandey; Smita S Patel; Michelle D Wang
Journal:  Nature       Date:  2011-09-18       Impact factor: 49.962

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  8 in total

1.  Molecular Mechanisms of DNA Replication and Repair Machinery: Insights from Microscopic Simulations.

Authors:  Christopher Maffeo; Han-Yi Chou; Aleksei Aksimentiev
Journal:  Adv Theory Simul       Date:  2019-02-12

2.  Molecular mechanism of DNA association with single-stranded DNA binding protein.

Authors:  Christopher Maffeo; Aleksei Aksimentiev
Journal:  Nucleic Acids Res       Date:  2017-12-01       Impact factor: 16.971

3.  Protein phosphatase 2A controls ongoing DNA replication by binding to and regulating cell division cycle 45 (CDC45).

Authors:  Abbey L Perl; Caitlin M O'Connor; Pengyan Fa; Franklin Mayca Pozo; Junran Zhang; Youwei Zhang; Goutham Narla
Journal:  J Biol Chem       Date:  2019-09-27       Impact factor: 5.486

4.  Slow unloading leads to DNA-bound β2-sliding clamp accumulation in live Escherichia coli cells.

Authors:  M Charl Moolman; Sriram Tiruvadi Krishnan; Jacob W J Kerssemakers; Aafke van den Berg; Pawel Tulinski; Martin Depken; Rodrigo Reyes-Lamothe; David J Sherratt; Nynke H Dekker
Journal:  Nat Commun       Date:  2014-12-18       Impact factor: 14.919

5.  DNA interstrand cross-link repair requires replication-fork convergence.

Authors:  Jieqiong Zhang; James M Dewar; Magda Budzowska; Anna Motnenko; Martin A Cohn; Johannes C Walter
Journal:  Nat Struct Mol Biol       Date:  2015-02-02       Impact factor: 15.369

6.  Annealing helicase HARP closes RPA-stabilized DNA bubbles non-processively.

Authors:  Daniel R Burnham; Bas Nijholt; Iwijn De Vlaminck; Jinhua Quan; Timur Yusufzai; Cees Dekker
Journal:  Nucleic Acids Res       Date:  2017-05-05       Impact factor: 16.971

7.  Single-strand DNA processing: phylogenomics and sequence diversity of a superfamily of potential prokaryotic HuH endonucleases.

Authors:  Yves Quentin; Patricia Siguier; Mick Chandler; Gwennaele Fichant
Journal:  BMC Genomics       Date:  2018-06-19       Impact factor: 3.969

8.  Single-molecule visualization of fast polymerase turnover in the bacterial replisome.

Authors:  Jacob S Lewis; Lisanne M Spenkelink; Slobodan Jergic; Elizabeth A Wood; Enrico Monachino; Nicholas P Horan; Karl E Duderstadt; Michael M Cox; Andrew Robinson; Nicholas E Dixon; Antoine M van Oijen
Journal:  Elife       Date:  2017-04-22       Impact factor: 8.140

  8 in total

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