Literature DB >> 28042596

Bacterial and Eukaryotic Replisome Machines.

Nina Yao1, Mike O'Donnell1.   

Abstract

Cellular genomic DNA is replicated by a multiprotein replisome machine. The replisome contains numerous essential factors that unwind, prime and synthesize each of the two strands of duplex DNA. The antiparallel structure of DNA, and unidirectional activity of DNA polymerases, requires the two strands of DNA to be extended in opposite directions, and this structural feature requires distinctive processes for synthesis of the two strands. Genome duplication is of central importance to all cell types, and one may expect the replisome apparatus to be conserved from bacteria to human, as is the case with RNA polymerase driven transcription and ribosome mediated translation. However, it is known that the replication factors of bacteria are not homologous to those of archaea and eukaryotes, indicating that the replication process evolved twice, independently, rather than from a common ancestor cell. Thus, the different domains of life may exhibit significant differences in their mechanistic strategy of replication. In this review, we compare and contrast the different structures and mechanistic features of the cellular replication machinery in the three domains of life.

Entities:  

Keywords:  CMG; DNA helicase; DNA polymerase; Primase; Replisome

Year:  2016        PMID: 28042596      PMCID: PMC5199024     

Source DB:  PubMed          Journal:  JSM Biochem Mol Biol        ISSN: 2333-7109


  73 in total

Review 1.  Perpetuating the double helix: molecular machines at eukaryotic DNA replication origins.

Authors:  Juan Méndez; Bruce Stillman
Journal:  Bioessays       Date:  2003-12       Impact factor: 4.345

2.  Molecular anatomy and regulation of a stable replisome at a paused eukaryotic DNA replication fork.

Authors:  Arturo Calzada; Ben Hodgson; Masato Kanemaki; Avelino Bueno; Karim Labib
Journal:  Genes Dev       Date:  2005-08-15       Impact factor: 11.361

Review 3.  Mechanisms of helicases.

Authors:  Smita S Patel; Ilker Donmez
Journal:  J Biol Chem       Date:  2006-05-02       Impact factor: 5.157

Review 4.  On helicases and other motor proteins.

Authors:  Eric J Enemark; Leemor Joshua-Tor
Journal:  Curr Opin Struct Biol       Date:  2008-03-10       Impact factor: 6.809

Review 5.  Archaeology of eukaryotic DNA replication.

Authors:  Kira S Makarova; Eugene V Koonin
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-11-01       Impact factor: 10.005

6.  The structure of T. aquaticus DNA polymerase III is distinct from eukaryotic replicative DNA polymerases.

Authors:  Scott Bailey; Richard A Wing; Thomas A Steitz
Journal:  Cell       Date:  2006-09-08       Impact factor: 41.582

Review 7.  Enigmatic roles of Mcm10 in DNA replication.

Authors:  Yee Mon Thu; Anja-Katrin Bielinsky
Journal:  Trends Biochem Sci       Date:  2013-01-17       Impact factor: 13.807

Review 8.  Mechanism and evolution of DNA primases.

Authors:  Robert D Kuchta; Gudrun Stengel
Journal:  Biochim Biophys Acta       Date:  2009-06-21

9.  The hexameric helicase DnaB adopts a nonplanar conformation during translocation.

Authors:  Ornchuma Itsathitphaisarn; Richard A Wing; William K Eliason; Jimin Wang; Thomas A Steitz
Journal:  Cell       Date:  2012-09-27       Impact factor: 41.582

10.  Reconstitution of a eukaryotic replisome reveals suppression mechanisms that define leading/lagging strand operation.

Authors:  Roxana E Georgescu; Grant D Schauer; Nina Y Yao; Lance D Langston; Olga Yurieva; Dan Zhang; Jeff Finkelstein; Mike E O'Donnell
Journal:  Elife       Date:  2015-04-14       Impact factor: 8.140

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  17 in total

Review 1.  A structural view of bacterial DNA replication.

Authors:  Aaron J Oakley
Journal:  Protein Sci       Date:  2019-04-17       Impact factor: 6.725

2.  Tunability of DNA Polymerase Stability during Eukaryotic DNA Replication.

Authors:  Jacob S Lewis; Lisanne M Spenkelink; Grant D Schauer; Olga Yurieva; Stefan H Mueller; Varsha Natarajan; Gurleen Kaur; Claire Maher; Callum Kay; Michael E O'Donnell; Antoine M van Oijen
Journal:  Mol Cell       Date:  2019-11-05       Impact factor: 17.970

Review 3.  Evolutionary Repair Experiments as a Window to the Molecular Diversity of Life.

Authors:  Thomas LaBar; Yu-Ying Phoebe Hsieh; Marco Fumasoni; Andrew W Murray
Journal:  Curr Biol       Date:  2020-05-18       Impact factor: 10.834

4.  Physical Basis for the Loading of a Bacterial Replicative Helicase onto DNA.

Authors:  Ernesto Arias-Palomo; Neha Puri; Valerie L O'Shea Murray; Qianyun Yan; James M Berger
Journal:  Mol Cell       Date:  2019-02-20       Impact factor: 17.970

Review 5.  Convergent evolution in two bacterial replicative helicase loaders.

Authors:  Jillian Chase; James Berger; David Jeruzalmi
Journal:  Trends Biochem Sci       Date:  2022-03-26       Impact factor: 14.264

6.  Models of Replicator Proliferation Involving Differential Replicator Subunit Stability.

Authors:  Zewei Li; Runhe Lyu; John Tower
Journal:  Orig Life Evol Biosph       Date:  2018-09-10       Impact factor: 1.950

Review 7.  Mechanisms of bacterial DNA replication restart.

Authors:  Tricia A Windgassen; Sarah R Wessel; Basudeb Bhattacharyya; James L Keck
Journal:  Nucleic Acids Res       Date:  2018-01-25       Impact factor: 16.971

Review 8.  Resurrecting the Dead (Molecules).

Authors:  Jan Zaucha; Jonathan G Heddle
Journal:  Comput Struct Biotechnol J       Date:  2017-05-30       Impact factor: 7.271

Review 9.  From chemical metabolism to life: the origin of the genetic coding process.

Authors:  Antoine Danchin
Journal:  Beilstein J Org Chem       Date:  2017-06-12       Impact factor: 2.883

10.  Structural Insight into the Specific DNA Template Binding to DnaG primase in Bacteria.

Authors:  Yingqin Zhou; Hao Luo; Zhongchuan Liu; Mu Yang; Xiaoyun Pang; Fei Sun; Ganggang Wang
Journal:  Sci Rep       Date:  2017-04-06       Impact factor: 4.379

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