Literature DB >> 16432240

Long-distance lateral diffusion of human Rad51 on double-stranded DNA.

Annette Granéli1, Caitlyn C Yeykal, Ragan B Robertson, Eric C Greene.   

Abstract

Rad51 is the primary eukaryotic recombinase responsible for initiating DNA strand exchange during homologous recombination. Although the subject of intense study for over a decade, many molecular details of the reactions promoted by Rad51 and related recombinases remain unknown. Using total internal reflection fluorescence microscopy, we directly visualized the behavior of individual Rad51 complexes on double-stranded DNA (dsDNA) molecules suspended in an extended configuration above a lipid bilayer. Here we show that complexes of Rad51 can bind to and slide freely along the helical axis of dsDNA. Sliding is bidirectional, does not require ATP hydrolysis, and displays properties consistent with a 1D random walk driven solely by thermal diffusion. The proteins move freely on the DNA for long periods of time; however, sliding terminates and the proteins become immobile upon encountering the free end of a linear dsDNA molecule. This study provides previously uncharacterized insights into the behaviors of human Rad51, which may apply to other members of the RecA-like family of recombinases.

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Year:  2006        PMID: 16432240      PMCID: PMC1345706          DOI: 10.1073/pnas.0508366103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

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2.  Quantitative comparison of algorithms for tracking single fluorescent particles.

Authors:  M K Cheezum; W F Walker; W H Guilford
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

3.  Organized arrays of individual DNA molecules tethered to supported lipid bilayers.

Authors:  Annette Granéli; Caitlyn C Yeykal; Tekkatte Krishnamurthy Prasad; Eric C Greene
Journal:  Langmuir       Date:  2006-01-03       Impact factor: 3.882

Review 4.  Supported membranes: scientific and practical applications.

Authors:  E Sackmann
Journal:  Science       Date:  1996-01-05       Impact factor: 47.728

Review 5.  Role of RAD52 epistasis group genes in homologous recombination and double-strand break repair.

Authors:  Lorraine S Symington
Journal:  Microbiol Mol Biol Rev       Date:  2002-12       Impact factor: 11.056

6.  Direct observation of single MuB polymers: evidence for a DNA-dependent conformational change for generating an active target complex.

Authors:  Eric C Greene; Kiyoshi Mizuuchi
Journal:  Mol Cell       Date:  2002-05       Impact factor: 17.970

7.  Basis for avid homologous DNA strand exchange by human Rad51 and RPA.

Authors:  S Sigurdsson; K Trujillo; B Song; S Stratton; P Sung
Journal:  J Biol Chem       Date:  2000-12-20       Impact factor: 5.157

Review 8.  Cancer susceptibility and the functions of BRCA1 and BRCA2.

Authors:  Ashok R Venkitaraman
Journal:  Cell       Date:  2002-01-25       Impact factor: 41.582

Review 9.  DNA strand exchange proteins: a biochemical and physical comparison.

Authors:  P R Bianco; R B Tracy; S C Kowalczykowski
Journal:  Front Biosci       Date:  1998-06-17

10.  Human meiotic recombinase Dmc1 promotes ATP-dependent homologous DNA strand exchange.

Authors:  Michael G Sehorn; Stefan Sigurdsson; Wendy Bussen; Vinzenz M Unger; Patrick Sung
Journal:  Nature       Date:  2004-05-27       Impact factor: 49.962

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  80 in total

1.  Dynamic strategies for target-site search by DNA-binding proteins.

Authors:  Mario A Díaz de la Rosa; Elena F Koslover; Peter J Mulligan; Andrew J Spakowitz
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

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Journal:  Nat Commun       Date:  2010-05-17       Impact factor: 14.919

3.  Nuclear proteins: finding and binding target sites in chromatin.

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Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

4.  How proteins bind to DNA: target discrimination and dynamic sequence search by the telomeric protein TRF1.

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Journal:  Nucleic Acids Res       Date:  2017-07-27       Impact factor: 16.971

5.  Dissecting elastic heterogeneity along DNA molecules coated partly with Rad51 using concurrent fluorescence microscopy and optical tweezers.

Authors:  Joost van Mameren; Mauro Modesti; Roland Kanaar; Claire Wyman; Gijs J L Wuite; Erwin J G Peterman
Journal:  Biophys J       Date:  2006-08-18       Impact factor: 4.033

6.  Dynamic basis for one-dimensional DNA scanning by the mismatch repair complex Msh2-Msh6.

Authors:  Jason Gorman; Arindam Chowdhury; Jennifer A Surtees; Jun Shimada; David R Reichman; Eric Alani; Eric C Greene
Journal:  Mol Cell       Date:  2007-11-09       Impact factor: 17.970

7.  Using the bias from flow to elucidate single DNA repair protein sliding and interactions with DNA.

Authors:  Yihan Lin; Tong Zhao; Xing Jian; Zishaan Farooqui; Xiaohui Qu; Chuan He; Aaron R Dinner; Norbert F Scherer
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

8.  Tracking of single quantum dot labeled EcoRV sliding along DNA manipulated by double optical tweezers.

Authors:  Andreas Biebricher; Wolfgang Wende; Christophe Escudé; Alfred Pingoud; Pierre Desbiolles
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

Review 9.  Single molecule techniques in DNA repair: a primer.

Authors:  Craig D Hughes; Michelle Simons; Cassidy E Mackenzie; Bennett Van Houten; Neil M Kad
Journal:  DNA Repair (Amst)       Date:  2014-05-10

10.  ATP-independent diffusion of double-stranded RNA binding proteins.

Authors:  Hye Ran Koh; Mary Anne Kidwell; Kaushik Ragunathan; Jennifer A Doudna; Sua Myong
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-18       Impact factor: 11.205

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