Literature DB >> 22064819

3-Benzyl-2-phenyl-1,3-thia-zolidin-4-one.

Hoong-Kun Fun, Madhukar Hemamalini, Poovan Shanmugavelan, Alagusundaram Ponnuswamy, Rathinavel Jagatheesan.   

Abstract

In the title compound, C(16)H(15)NOS, the thia-zolidine ring, which is essentially planar [maximum deviation = 0.071 (2) Å], makes dihedral angles of 88.01 (8) and 87.21 (8)° with the terminal phenyl rings. The dihedral angle between the phenyl rings is 49.45 (5)°. In the crystal, mol-ecules are linked by a weak inter-molecular C-H⋯O hydrogen bond, forming a supra-molecular chain along the b axis. Furthermore, the crystal packing is stabilized by a weak C-H⋯π inter-action.

Entities:  

Year:  2011        PMID: 22064819      PMCID: PMC3201390          DOI: 10.1107/S1600536811037706

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details and applications of thia­zolidine-4-ones, see: Dutta et al. (1990 ▶); Jadhav & Ingle (1978 ▶); Gursoy & Terzioglu (2005 ▶); Rawal et al. (2007 ▶); Shrivastava et al. (2005 ▶); Look et al. (1996 ▶); Anders et al. (2001 ▶); Barreca et al. (2001 ▶); Diurno et al. (1992 ▶).

Experimental

Crystal data

C16H15NOS M = 269.35 Monoclinic, a = 13.5734 (15) Å b = 10.1402 (11) Å c = 10.1496 (11) Å β = 104.305 (2)° V = 1353.6 (3) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 296 K 0.41 × 0.19 × 0.06 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.913, T max = 0.985 21164 measured reflections 3990 independent reflections 2813 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.112 S = 1.05 3990 reflections 172 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.25 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536811037706/is2778sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811037706/is2778Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811037706/is2778Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H15NOSF(000) = 568
Mr = 269.35Dx = 1.322 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4044 reflections
a = 13.5734 (15) Åθ = 2.9–24.9°
b = 10.1402 (11) ŵ = 0.23 mm1
c = 10.1496 (11) ÅT = 296 K
β = 104.305 (2)°Plate, colourless
V = 1353.6 (3) Å30.41 × 0.19 × 0.06 mm
Z = 4
Bruker APEXII DUO CCD area-detector diffractometer3990 independent reflections
Radiation source: fine-focus sealed tube2813 reflections with I > 2σ(I)
graphiteRint = 0.041
φ and ω scansθmax = 30.2°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −19→19
Tmin = 0.913, Tmax = 0.985k = −14→14
21164 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0448P)2 + 0.2789P] where P = (Fo2 + 2Fc2)/3
3990 reflections(Δ/σ)max = 0.001
172 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.04954 (3)0.22379 (4)0.22886 (4)0.04505 (12)
O10.16669 (11)0.46692 (11)0.51751 (13)0.0650 (4)
N10.21308 (9)0.28385 (11)0.41853 (12)0.0389 (3)
C10.34627 (12)0.44309 (17)0.30014 (17)0.0510 (4)
H1A0.27830.46760.28380.061*
C20.40708 (14)0.49962 (19)0.22451 (19)0.0582 (4)
H2A0.37980.56170.15800.070*
C30.50706 (14)0.4646 (2)0.2471 (2)0.0637 (5)
H3A0.54810.50240.19630.076*
C40.54623 (15)0.3732 (2)0.3454 (3)0.0810 (7)
H4A0.61430.34920.36130.097*
C50.48589 (14)0.3161 (2)0.4212 (2)0.0650 (5)
H5A0.51360.25380.48730.078*
C60.38484 (11)0.35067 (14)0.39972 (15)0.0410 (3)
C70.32037 (12)0.29270 (17)0.48752 (16)0.0479 (4)
H7A0.34540.20520.51660.057*
H7B0.32780.34670.56830.057*
C80.14552 (12)0.37589 (14)0.43636 (15)0.0434 (3)
C90.04128 (13)0.35455 (17)0.34511 (19)0.0533 (4)
H9A0.01730.43470.29530.064*
H9B−0.00610.33090.39870.064*
C100.17936 (10)0.17886 (13)0.32051 (14)0.0358 (3)
H10A0.22250.17880.25600.043*
C110.18426 (10)0.04347 (13)0.38516 (13)0.0350 (3)
C120.14070 (11)0.02045 (14)0.49347 (15)0.0420 (3)
H12A0.11040.08960.52910.050*
C130.14219 (12)−0.10439 (16)0.54857 (17)0.0499 (4)
H13A0.1127−0.11880.62090.060*
C140.18706 (13)−0.20754 (16)0.49698 (19)0.0547 (4)
H14A0.1879−0.29150.53420.066*
C150.23077 (14)−0.18557 (16)0.38958 (19)0.0561 (4)
H15A0.2611−0.25500.35440.067*
C160.22959 (12)−0.06032 (15)0.33392 (16)0.0455 (4)
H16A0.2594−0.04610.26190.055*
U11U22U33U12U13U23
S10.0441 (2)0.0416 (2)0.0451 (2)−0.00081 (16)0.00278 (16)0.00479 (16)
O10.0919 (10)0.0400 (6)0.0633 (7)−0.0033 (6)0.0195 (7)−0.0119 (6)
N10.0399 (6)0.0325 (6)0.0436 (6)−0.0060 (5)0.0088 (5)−0.0002 (5)
C10.0404 (8)0.0553 (10)0.0561 (9)0.0005 (7)0.0099 (7)0.0130 (7)
C20.0548 (10)0.0599 (11)0.0594 (10)−0.0048 (8)0.0132 (8)0.0154 (8)
C30.0508 (10)0.0721 (13)0.0721 (12)−0.0090 (9)0.0225 (9)0.0089 (10)
C40.0441 (10)0.0872 (16)0.1158 (18)0.0105 (10)0.0273 (11)0.0296 (14)
C50.0480 (10)0.0596 (11)0.0852 (13)0.0083 (8)0.0119 (9)0.0229 (10)
C60.0383 (7)0.0363 (7)0.0452 (8)−0.0057 (6)0.0041 (6)−0.0011 (6)
C70.0456 (8)0.0481 (9)0.0450 (8)−0.0090 (7)0.0020 (7)0.0074 (7)
C80.0561 (9)0.0309 (7)0.0462 (8)−0.0036 (6)0.0185 (7)0.0023 (6)
C90.0496 (9)0.0456 (9)0.0662 (10)0.0059 (7)0.0173 (8)−0.0016 (8)
C100.0372 (7)0.0346 (7)0.0369 (7)−0.0029 (5)0.0117 (5)−0.0001 (5)
C110.0339 (7)0.0319 (6)0.0382 (7)−0.0008 (5)0.0069 (5)−0.0012 (5)
C120.0450 (8)0.0365 (7)0.0472 (8)−0.0005 (6)0.0165 (6)0.0010 (6)
C130.0495 (9)0.0448 (9)0.0555 (9)−0.0074 (7)0.0130 (7)0.0118 (7)
C140.0547 (10)0.0337 (8)0.0667 (11)−0.0038 (7)−0.0020 (8)0.0079 (7)
C150.0611 (11)0.0368 (8)0.0649 (11)0.0126 (7)0.0050 (9)−0.0067 (7)
C160.0471 (8)0.0443 (8)0.0451 (8)0.0074 (7)0.0111 (7)−0.0034 (6)
S1—C91.7967 (17)C7—H7A0.9700
S1—C101.8352 (14)C7—H7B0.9700
O1—C81.2231 (18)C8—C91.503 (2)
N1—C81.3515 (19)C9—H9A0.9700
N1—C101.4518 (18)C9—H9B0.9700
N1—C71.4544 (19)C10—C111.5160 (19)
C1—C21.383 (2)C10—H10A0.9800
C1—C61.383 (2)C11—C161.3838 (19)
C1—H1A0.9300C11—C121.391 (2)
C2—C31.366 (3)C12—C131.382 (2)
C2—H2A0.9300C12—H12A0.9300
C3—C41.369 (3)C13—C141.377 (2)
C3—H3A0.9300C13—H13A0.9300
C4—C51.382 (3)C14—C151.382 (3)
C4—H4A0.9300C14—H14A0.9300
C5—C61.380 (2)C15—C161.389 (2)
C5—H5A0.9300C15—H15A0.9300
C6—C71.513 (2)C16—H16A0.9300
C9—S1—C1093.34 (7)C8—C9—S1107.99 (11)
C8—N1—C10119.26 (12)C8—C9—H9A110.1
C8—N1—C7121.65 (13)S1—C9—H9A110.1
C10—N1—C7118.93 (12)C8—C9—H9B110.1
C2—C1—C6121.10 (15)S1—C9—H9B110.1
C2—C1—H1A119.4H9A—C9—H9B108.4
C6—C1—H1A119.4N1—C10—C11113.25 (11)
C3—C2—C1120.23 (17)N1—C10—S1105.43 (9)
C3—C2—H2A119.9C11—C10—S1112.22 (9)
C1—C2—H2A119.9N1—C10—H10A108.6
C2—C3—C4119.27 (17)C11—C10—H10A108.6
C2—C3—H3A120.4S1—C10—H10A108.6
C4—C3—H3A120.4C16—C11—C12119.00 (13)
C3—C4—C5120.83 (18)C16—C11—C10120.14 (13)
C3—C4—H4A119.6C12—C11—C10120.83 (12)
C5—C4—H4A119.6C13—C12—C11120.47 (14)
C6—C5—C4120.54 (17)C13—C12—H12A119.8
C6—C5—H5A119.7C11—C12—H12A119.8
C4—C5—H5A119.7C14—C13—C12120.36 (16)
C5—C6—C1118.02 (15)C14—C13—H13A119.8
C5—C6—C7120.33 (14)C12—C13—H13A119.8
C1—C6—C7121.60 (14)C13—C14—C15119.60 (15)
N1—C7—C6113.35 (12)C13—C14—H14A120.2
N1—C7—H7A108.9C15—C14—H14A120.2
C6—C7—H7A108.9C14—C15—C16120.29 (15)
N1—C7—H7B108.9C14—C15—H15A119.9
C6—C7—H7B108.9C16—C15—H15A119.9
H7A—C7—H7B107.7C11—C16—C15120.28 (15)
O1—C8—N1123.85 (15)C11—C16—H16A119.9
O1—C8—C9123.53 (15)C15—C16—H16A119.9
N1—C8—C9112.62 (13)
C6—C1—C2—C30.1 (3)C8—N1—C10—C11−114.56 (14)
C1—C2—C3—C4−0.1 (3)C7—N1—C10—C1169.99 (16)
C2—C3—C4—C50.2 (4)C8—N1—C10—S18.50 (15)
C3—C4—C5—C6−0.3 (4)C7—N1—C10—S1−166.95 (10)
C4—C5—C6—C10.3 (3)C9—S1—C10—N1−10.43 (10)
C4—C5—C6—C7−177.10 (19)C9—S1—C10—C11113.28 (11)
C2—C1—C6—C5−0.2 (3)N1—C10—C11—C16−131.16 (14)
C2—C1—C6—C7177.17 (16)S1—C10—C11—C16109.62 (13)
C8—N1—C7—C6−98.30 (17)N1—C10—C11—C1250.93 (18)
C10—N1—C7—C677.04 (17)S1—C10—C11—C12−68.30 (15)
C5—C6—C7—N1−151.78 (16)C16—C11—C12—C13−0.4 (2)
C1—C6—C7—N130.9 (2)C10—C11—C12—C13177.59 (13)
C10—N1—C8—O1179.17 (14)C11—C12—C13—C140.1 (2)
C7—N1—C8—O1−5.5 (2)C12—C13—C14—C150.0 (3)
C10—N1—C8—C9−1.01 (18)C13—C14—C15—C160.0 (3)
C7—N1—C8—C9174.31 (13)C12—C11—C16—C150.4 (2)
O1—C8—C9—S1172.54 (13)C10—C11—C16—C15−177.53 (14)
N1—C8—C9—S1−7.28 (16)C14—C15—C16—C11−0.3 (2)
C10—S1—C9—C810.22 (12)
Cg1 is the centroid of the C11–C16 ring.
D—H···AD—HH···AD···AD—H···A
C14—H14A···O1i0.932.473.323 (2)153
C2—H2A···Cg1ii0.932.993.705 (3)134
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C11–C16 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C14—H14A⋯O1i0.932.473.323 (2)153
C2—H2ACg1ii0.932.993.705 (3)134

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Design, synthesis, and evaluation of 2-aryl-3-heteroaryl-1,3-thiazolidin-4-ones as anti-HIV agents.

Authors:  Ravindra K Rawal; Rajkamal Tripathi; S B Katti; Christophe Pannecouque; Erik De Clercq
Journal:  Bioorg Med Chem       Date:  2006-12-06       Impact factor: 3.641

3.  Discovery of 2,3-diaryl-1,3-thiazolidin-4-ones as potent anti-HIV-1 agents.

Authors:  M L Barreca; A Chimirri; L De Luca; A M Monforte; P Monforte; A Rao; M Zappalà; J Balzarini; E De Clercq; C Pannecouque; M Witvrouw
Journal:  Bioorg Med Chem Lett       Date:  2001-07-09       Impact factor: 2.823

4.  Synthesis and antihistaminic activity of some thiazolidin-4-ones.

Authors:  M V Diurno; O Mazzoni; E Piscopo; A Calignano; F Giordano; A Bolognese
Journal:  J Med Chem       Date:  1992-07-24       Impact factor: 7.446

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  7 in total

1.  (Z)-3-(4-Methyl-phen-yl)-2-[(2-phenyl-cyclo-hex-2-en-1-yl)imino]-1,3-thia-zol-idin-4-one.

Authors:  Chin Wei Ooi; Hoong-Kun Fun; Ching Kheng Quah; Murugan Sathishkumar; Alagusundaram Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19

2.  (Z)-3-(4-Chloro-phen-yl)-2-(2-phenyl-cyclo-hex-2-en-1-yl-imino)-thia-zolidin-4-one.

Authors:  Chin Wei Ooi; Hoong-Kun Fun; Ching Kheng Quah; Murugan Sathishkumar; Alagusundaram Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-02

3.  (Z)-3-(4-Bromo-phen-yl)-2-[(2-phenyl-cyclo-hex-2-en-1-yl)imino]-1,3-thia-zol-idin-4-one.

Authors:  Chin Wei Ooi; Hoong-Kun Fun; Ching Kheng Quah; Murugan Sathishkumar; Alagusundaram Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-02

4.  Crystal structure of (±)-3-[(benzo[d][1,3]dioxol-5-yl)meth-yl]-2-(3,4,5-tri-meth-oxy-phen-yl)-1,3-thia-zolidin-4-one.

Authors:  Rodolfo Moreno-Fuquen; Juan C Castillo; Rodrigo Abonia; Javier Ellena; Carlos A De Simone
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-11-05

5.  Crystal structures of two substituted thia-zolidine derivatives.

Authors:  Vijayan Viswanathan; Naga Siva Rao; Raghavachary Raghunathan; Devadasan Velmurugan
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-07-19

6.  (Z)-3-Benzyl-2-[(2-phenyl-cyclo-hex-2-en-yl)imino]-1,3-thia-zolidin-4-one.

Authors:  Chin Wei Ooi; Hoong-Kun Fun; Ching Kheng Quah; Murugan Sathishkumar; Alagusundaram Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-28

7.  2,3-Diphenyl-1,3-thia-zolidin-4-one.

Authors:  Hemant P Yennawar; John Tierney; Lee J Silverberg
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-07-02
  7 in total

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