Literature DB >> 22807825

(Z)-3-(4-Bromo-phen-yl)-2-[(2-phenyl-cyclo-hex-2-en-1-yl)imino]-1,3-thia-zol-idin-4-one.

Chin Wei Ooi, Hoong-Kun Fun, Ching Kheng Quah, Murugan Sathishkumar, Alagusundaram Ponnuswamy.   

Abstract

The title compound, C(21)H(19)BrN(2)OS, exists in a cis conformation with respect to the N=C bond [1.2602 (14) Å]. The cyclo-hexene ring adopts a distorted half-chair conformation and the C-N bond lies in an equatorial orientation. The thia-zolidine ring forms dihedral angles of 53.76 (7) and 57.22 (7)° with the benzene and bromo-substituted benzene rings, respectively. The dihedral angle between the benzene and bromo-substituted benzene rings is 76.06 (7)°. In the crystal, inversion dimers linked by pairs of C-H⋯O hydrogen bonds generate R(2) (2)(14) loops. The crystal is further consolidated by weak C-H⋯π inter-actions.

Entities:  

Year:  2012        PMID: 22807825      PMCID: PMC3393268          DOI: 10.1107/S1600536812024646

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures and background to thia­zolidin-4-one derivatives, see: Fun et al. (2011 ▶); Ooi et al. (2012a ▶,b ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C21H19BrN2OS M = 427.35 Monoclinic, a = 9.4573 (1) Å b = 16.6662 (3) Å c = 13.8812 (2) Å β = 122.665 (1)° V = 1841.88 (5) Å3 Z = 4 Mo Kα radiation μ = 2.36 mm−1 T = 100 K 0.45 × 0.29 × 0.25 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.418, T max = 0.587 24632 measured reflections 6727 independent reflections 5751 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.069 S = 1.04 6727 reflections 235 parameters H-atom parameters constrained Δρmax = 0.55 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812024646/hb6826sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812024646/hb6826Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812024646/hb6826Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H19BrN2OSF(000) = 872
Mr = 427.35Dx = 1.541 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9954 reflections
a = 9.4573 (1) Åθ = 2.8–32.6°
b = 16.6662 (3) ŵ = 2.36 mm1
c = 13.8812 (2) ÅT = 100 K
β = 122.665 (1)°Block, yellow
V = 1841.88 (5) Å30.45 × 0.29 × 0.25 mm
Z = 4
Bruker SMART APEXII CCD diffractometer6727 independent reflections
Radiation source: fine-focus sealed tube5751 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
φ and ω scansθmax = 32.7°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −14→12
Tmin = 0.418, Tmax = 0.587k = −25→25
24632 measured reflectionsl = −21→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.069H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0366P)2 + 0.4872P] where P = (Fo2 + 2Fc2)/3
6727 reflections(Δ/σ)max = 0.002
235 parametersΔρmax = 0.55 e Å3
0 restraintsΔρmin = −0.27 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.262828 (17)−0.045374 (7)0.626813 (11)0.02221 (4)
S10.23445 (4)0.328421 (18)1.04486 (3)0.02081 (7)
O10.31396 (12)0.10045 (6)1.08962 (8)0.02302 (18)
N10.19965 (12)0.30829 (6)0.83807 (8)0.01380 (17)
N20.26458 (12)0.19597 (6)0.95606 (8)0.01426 (17)
C1−0.18227 (16)0.31078 (8)0.68851 (12)0.0211 (2)
H1A−0.15350.32820.76050.025*
C2−0.30028 (16)0.25012 (8)0.63418 (13)0.0260 (3)
H2A−0.35070.22760.66970.031*
C3−0.34355 (17)0.22278 (8)0.52691 (13)0.0305 (3)
H3A−0.42190.18180.49100.037*
C4−0.26912 (18)0.25702 (9)0.47385 (12)0.0295 (3)
H4A−0.29790.23920.40200.035*
C5−0.15163 (16)0.31794 (8)0.52797 (10)0.0217 (2)
H5A−0.10240.34050.49170.026*
C6−0.10613 (14)0.34592 (7)0.63606 (10)0.0164 (2)
C70.02578 (14)0.40843 (7)0.69463 (9)0.01424 (19)
C80.02723 (15)0.47371 (7)0.63914 (10)0.0167 (2)
H8A−0.06130.48050.56360.020*
C90.16181 (16)0.53696 (7)0.69010 (10)0.0173 (2)
H9A0.10920.58950.67210.021*
H9B0.22700.53320.65520.021*
C100.27966 (16)0.52939 (7)0.81938 (10)0.0180 (2)
H10A0.22740.55310.85650.022*
H10B0.38280.55840.84430.022*
C110.32010 (15)0.44150 (7)0.85432 (10)0.0173 (2)
H11A0.39810.43800.93650.021*
H11B0.37360.41800.81790.021*
C120.16053 (14)0.39451 (7)0.81969 (9)0.01417 (19)
H12A0.11830.41190.86710.017*
C130.23002 (14)0.27822 (7)0.93069 (9)0.01370 (19)
C140.28566 (16)0.23800 (8)1.12881 (10)0.0194 (2)
H14A0.39380.24371.20000.023*
H14B0.20140.22761.14680.023*
C150.29094 (15)0.16970 (7)1.05911 (10)0.0163 (2)
C160.26532 (14)0.14088 (7)0.87679 (9)0.01387 (19)
C170.40768 (15)0.09488 (7)0.91258 (10)0.0172 (2)
H17A0.50260.10160.98570.021*
C180.40766 (16)0.03854 (7)0.83822 (11)0.0182 (2)
H18A0.50180.00700.86100.022*
C190.26453 (15)0.03056 (7)0.72975 (10)0.0161 (2)
C200.12226 (15)0.07709 (7)0.69269 (10)0.0165 (2)
H20A0.02790.07080.61920.020*
C210.12320 (14)0.13315 (7)0.76719 (10)0.0154 (2)
H21A0.02960.16520.74390.018*
U11U22U33U12U13U23
Br10.02917 (7)0.01757 (6)0.02310 (7)0.00051 (4)0.01621 (6)−0.00474 (4)
S10.03491 (17)0.01512 (13)0.01733 (13)0.00423 (11)0.01734 (13)0.00082 (10)
O10.0320 (5)0.0179 (4)0.0258 (4)0.0073 (4)0.0200 (4)0.0086 (3)
N10.0161 (4)0.0116 (4)0.0139 (4)0.0011 (3)0.0082 (3)0.0007 (3)
N20.0187 (4)0.0120 (4)0.0137 (4)0.0016 (3)0.0098 (4)0.0018 (3)
C10.0189 (5)0.0175 (5)0.0273 (6)0.0013 (4)0.0127 (5)0.0019 (4)
C20.0164 (5)0.0196 (6)0.0399 (8)0.0008 (4)0.0139 (5)0.0046 (5)
C30.0171 (6)0.0174 (6)0.0401 (8)−0.0024 (5)0.0042 (6)−0.0016 (5)
C40.0245 (6)0.0219 (6)0.0236 (6)0.0002 (5)0.0007 (5)−0.0047 (5)
C50.0227 (6)0.0183 (5)0.0179 (5)−0.0001 (4)0.0068 (5)0.0002 (4)
C60.0141 (5)0.0129 (5)0.0183 (5)0.0021 (4)0.0062 (4)0.0015 (4)
C70.0148 (5)0.0133 (5)0.0146 (5)0.0008 (4)0.0079 (4)−0.0002 (4)
C80.0182 (5)0.0156 (5)0.0141 (5)0.0011 (4)0.0074 (4)0.0013 (4)
C90.0217 (5)0.0131 (5)0.0181 (5)0.0002 (4)0.0113 (4)0.0018 (4)
C100.0205 (5)0.0127 (5)0.0180 (5)−0.0023 (4)0.0086 (4)−0.0012 (4)
C110.0170 (5)0.0137 (5)0.0168 (5)−0.0002 (4)0.0062 (4)0.0003 (4)
C120.0173 (5)0.0112 (5)0.0138 (4)0.0011 (4)0.0083 (4)0.0009 (3)
C130.0150 (5)0.0118 (5)0.0143 (4)0.0005 (4)0.0079 (4)−0.0005 (3)
C140.0268 (6)0.0180 (5)0.0164 (5)0.0025 (4)0.0137 (5)0.0021 (4)
C150.0172 (5)0.0183 (5)0.0157 (5)0.0028 (4)0.0104 (4)0.0034 (4)
C160.0172 (5)0.0113 (5)0.0149 (5)0.0003 (4)0.0099 (4)0.0004 (3)
C170.0176 (5)0.0153 (5)0.0171 (5)0.0022 (4)0.0082 (4)0.0014 (4)
C180.0201 (5)0.0154 (5)0.0204 (5)0.0041 (4)0.0118 (5)0.0017 (4)
C190.0217 (5)0.0115 (5)0.0189 (5)−0.0010 (4)0.0134 (5)−0.0014 (4)
C200.0183 (5)0.0152 (5)0.0167 (5)−0.0013 (4)0.0099 (4)−0.0004 (4)
C210.0158 (5)0.0144 (5)0.0166 (5)0.0006 (4)0.0092 (4)0.0007 (4)
Br1—C191.9023 (11)C8—H8A0.9300
S1—C131.7725 (11)C9—C101.5230 (17)
S1—C141.8039 (12)C9—H9A0.9700
O1—C151.2080 (14)C9—H9B0.9700
N1—C131.2602 (14)C10—C111.5254 (16)
N1—C121.4714 (14)C10—H10A0.9700
N2—C151.3839 (14)C10—H10B0.9700
N2—C131.4090 (14)C11—C121.5293 (16)
N2—C161.4360 (14)C11—H11A0.9700
C1—C21.3884 (18)C11—H11B0.9700
C1—C61.3992 (17)C12—H12A0.9800
C1—H1A0.9300C14—C151.5122 (17)
C2—C31.391 (2)C14—H14A0.9700
C2—H2A0.9300C14—H14B0.9700
C3—C41.387 (2)C16—C171.3875 (16)
C3—H3A0.9300C16—C211.3894 (15)
C4—C51.3887 (19)C17—C181.3953 (16)
C4—H4A0.9300C17—H17A0.9300
C5—C61.3990 (17)C18—C191.3846 (17)
C5—H5A0.9300C18—H18A0.9300
C6—C71.4858 (16)C19—C201.3889 (17)
C7—C81.3374 (16)C20—C211.3902 (16)
C7—C121.5177 (15)C20—H20A0.9300
C8—C91.5032 (17)C21—H21A0.9300
C13—S1—C1492.97 (5)C10—C11—H11A109.5
C13—N1—C12117.57 (9)C12—C11—H11A109.5
C15—N2—C13117.01 (9)C10—C11—H11B109.5
C15—N2—C16121.13 (9)C12—C11—H11B109.5
C13—N2—C16121.80 (9)H11A—C11—H11B108.1
C2—C1—C6120.71 (13)N1—C12—C7108.97 (9)
C2—C1—H1A119.6N1—C12—C11109.42 (9)
C6—C1—H1A119.6C7—C12—C11110.99 (9)
C1—C2—C3120.39 (13)N1—C12—H12A109.1
C1—C2—H2A119.8C7—C12—H12A109.1
C3—C2—H2A119.8C11—C12—H12A109.1
C4—C3—C2119.56 (12)N1—C13—N2122.43 (10)
C4—C3—H3A120.2N1—C13—S1127.37 (9)
C2—C3—H3A120.2N2—C13—S1110.21 (8)
C3—C4—C5120.05 (13)C15—C14—S1107.80 (8)
C3—C4—H4A120.0C15—C14—H14A110.1
C5—C4—H4A120.0S1—C14—H14A110.1
C4—C5—C6121.14 (13)C15—C14—H14B110.1
C4—C5—H5A119.4S1—C14—H14B110.1
C6—C5—H5A119.4H14A—C14—H14B108.5
C5—C6—C1118.15 (11)O1—C15—N2124.24 (11)
C5—C6—C7120.14 (11)O1—C15—C14123.83 (10)
C1—C6—C7121.65 (11)N2—C15—C14111.93 (10)
C8—C7—C6121.45 (10)C17—C16—C21121.27 (10)
C8—C7—C12121.33 (10)C17—C16—N2118.95 (10)
C6—C7—C12117.22 (9)C21—C16—N2119.76 (10)
C7—C8—C9124.66 (10)C16—C17—C18119.62 (11)
C7—C8—H8A117.7C16—C17—H17A120.2
C9—C8—H8A117.7C18—C17—H17A120.2
C8—C9—C10113.05 (9)C19—C18—C17118.61 (11)
C8—C9—H9A109.0C19—C18—H18A120.7
C10—C9—H9A109.0C17—C18—H18A120.7
C8—C9—H9B109.0C18—C19—C20122.15 (11)
C10—C9—H9B109.0C18—C19—Br1119.19 (9)
H9A—C9—H9B107.8C20—C19—Br1118.65 (9)
C9—C10—C11110.65 (9)C19—C20—C21118.93 (11)
C9—C10—H10A109.5C19—C20—H20A120.5
C11—C10—H10A109.5C21—C20—H20A120.5
C9—C10—H10B109.5C16—C21—C20119.40 (11)
C11—C10—H10B109.5C16—C21—H21A120.3
H10A—C10—H10B108.1C20—C21—H21A120.3
C10—C11—C12110.87 (10)
C6—C1—C2—C30.61 (19)C15—N2—C13—N1−178.09 (11)
C1—C2—C3—C4−0.6 (2)C16—N2—C13—N1−0.77 (17)
C2—C3—C4—C50.3 (2)C15—N2—C13—S11.31 (12)
C3—C4—C5—C60.0 (2)C16—N2—C13—S1178.64 (8)
C4—C5—C6—C10.04 (18)C14—S1—C13—N1179.95 (11)
C4—C5—C6—C7177.08 (12)C14—S1—C13—N20.58 (9)
C2—C1—C6—C5−0.33 (18)C13—S1—C14—C15−2.07 (9)
C2—C1—C6—C7−177.32 (11)C13—N2—C15—O1176.41 (11)
C5—C6—C7—C845.66 (16)C16—N2—C15—O1−0.94 (18)
C1—C6—C7—C8−137.41 (12)C13—N2—C15—C14−2.97 (14)
C5—C6—C7—C12−133.41 (11)C16—N2—C15—C14179.69 (10)
C1—C6—C7—C1243.52 (15)S1—C14—C15—O1−176.23 (10)
C6—C7—C8—C9−176.02 (11)S1—C14—C15—N23.15 (12)
C12—C7—C8—C93.01 (18)C15—N2—C16—C17−58.28 (15)
C7—C8—C9—C10−11.99 (17)C13—N2—C16—C17124.50 (12)
C8—C9—C10—C1140.11 (14)C15—N2—C16—C21120.22 (12)
C9—C10—C11—C12−60.99 (13)C13—N2—C16—C21−57.00 (15)
C13—N1—C12—C7−142.56 (10)C21—C16—C17—C18−1.30 (17)
C13—N1—C12—C1195.92 (12)N2—C16—C17—C18177.17 (10)
C8—C7—C12—N1−143.05 (11)C16—C17—C18—C190.38 (17)
C6—C7—C12—N136.02 (13)C17—C18—C19—C200.48 (18)
C8—C7—C12—C11−22.49 (15)C17—C18—C19—Br1179.52 (9)
C6—C7—C12—C11156.58 (10)C18—C19—C20—C21−0.43 (18)
C10—C11—C12—N1171.22 (9)Br1—C19—C20—C21−179.48 (9)
C10—C11—C12—C750.93 (13)C17—C16—C21—C201.35 (17)
C12—N1—C13—N2178.28 (10)N2—C16—C21—C20−177.11 (10)
C12—N1—C13—S1−1.01 (15)C19—C20—C21—C16−0.48 (17)
D—H···AD—HH···AD···AD—H···A
C18—H18A···O1i0.932.333.2333 (15)164
C17—H17A···Cg1ii0.932.883.5802 (15)133
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C1–C6 benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C18—H18A⋯O1i 0.932.333.2333 (15)164
C17—H17ACg1ii 0.932.883.5802 (15)133

Symmetry codes: (i) ; (ii) .

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Authors:  Hoong-Kun Fun; Madhukar Hemamalini; Poovan Shanmugavelan; Alagusundaram Ponnuswamy; Rathinavel Jagatheesan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30

3.  (Z)-3-(4-Methyl-phen-yl)-2-[(2-phenyl-cyclo-hex-2-en-1-yl)imino]-1,3-thia-zol-idin-4-one.

Authors:  Chin Wei Ooi; Hoong-Kun Fun; Ching Kheng Quah; Murugan Sathishkumar; Alagusundaram Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19

4.  (Z)-3-(4-Chloro-phen-yl)-2-(2-phenyl-cyclo-hex-2-en-1-yl-imino)-thia-zolidin-4-one.

Authors:  Chin Wei Ooi; Hoong-Kun Fun; Ching Kheng Quah; Murugan Sathishkumar; Alagusundaram Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-02

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
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Journal:  Beilstein J Org Chem       Date:  2013-04-10       Impact factor: 2.883

2.  (Z)-3-Benzyl-2-[(2-phenyl-cyclo-hex-2-en-yl)imino]-1,3-thia-zolidin-4-one.

Authors:  Chin Wei Ooi; Hoong-Kun Fun; Ching Kheng Quah; Murugan Sathishkumar; Alagusundaram Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-28
  2 in total

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