Literature DB >> 21963197

Xenopus research: metamorphosed by genetics and genomics.

Richard M Harland1, Robert M Grainger.   

Abstract

Research using Xenopus takes advantage of large, abundant eggs and readily manipulated embryos in addition to conserved cellular, developmental and genomic organization with mammals. Research on Xenopus has defined key principles of gene regulation and signal transduction, embryonic induction, morphogenesis and patterning as well as cell cycle regulation. Genomic and genetic advances in this system, including the development of Xenopus tropicalis as a genetically tractable complement to the widely used Xenopus laevis, capitalize on the classical strengths and wealth of achievements. These attributes provide the tools to tackle the complex biological problems of the new century, including cellular reprogramming, organogenesis, regeneration, gene regulatory networks and protein interactions controlling growth and development, all of which provide insights into a multitude of human diseases and their potential treatments. Copyright Â
© 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21963197      PMCID: PMC3601910          DOI: 10.1016/j.tig.2011.08.003

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  93 in total

1.  The introduction of Xenopus laevis into developmental biology: of empire, pregnancy testing and ribosomal genes.

Authors:  J B Gurdon; N Hopwood
Journal:  Int J Dev Biol       Date:  2000       Impact factor: 2.203

2.  Expression cloning of noggin, a new dorsalizing factor localized to the Spemann organizer in Xenopus embryos.

Authors:  W C Smith; R M Harland
Journal:  Cell       Date:  1992-09-04       Impact factor: 41.582

3.  Planar cell polarity genes regulate polarized extracellular matrix deposition during frog gastrulation.

Authors:  Toshiyasu Goto; Lance Davidson; Makoto Asashima; Ray Keller
Journal:  Curr Biol       Date:  2005-04-26       Impact factor: 10.834

4.  Tol2 transposon-mediated transgenesis in Xenopus tropicalis.

Authors:  Michelle R Johnson Hamlet; Donald A Yergeau; Emin Kuliyev; Masatoshi Takeda; Masanori Taira; Koichi Kawakami; Paul E Mead
Journal:  Genesis       Date:  2006-09       Impact factor: 2.487

5.  Dorsoventral patterning in Xenopus: inhibition of ventral signals by direct binding of chordin to BMP-4.

Authors:  S Piccolo; Y Sasai; B Lu; E M De Robertis
Journal:  Cell       Date:  1996-08-23       Impact factor: 41.582

6.  Defining a large set of full-length clones from a Xenopus tropicalis EST project.

Authors:  Michael J Gilchrist; Aaron M Zorn; Jana Voigt; James C Smith; Nancy Papalopulu; Enrique Amaya
Journal:  Dev Biol       Date:  2004-07-15       Impact factor: 3.582

7.  Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells.

Authors:  Jamy C Peng; Anton Valouev; Tomek Swigut; Junmei Zhang; Yingming Zhao; Arend Sidow; Joanna Wysocka
Journal:  Cell       Date:  2009-12-24       Impact factor: 41.582

8.  The development of Xenopus tropicalis transgenic lines and their use in studying lens developmental timing in living embryos.

Authors:  M F Offield; N Hirsch; R M Grainger
Journal:  Development       Date:  2000-05       Impact factor: 6.868

9.  Absence of heartbeat in the Xenopus tropicalis mutation muzak is caused by a nonsense mutation in cardiac myosin myh6.

Authors:  Anita Abu-Daya; Amy K Sater; Dan E Wells; Timothy J Mohun; Lyle B Zimmerman
Journal:  Dev Biol       Date:  2009-09-19       Impact factor: 3.582

10.  A mesoderm-inducing factor is produced by Xenopus cell line.

Authors:  J C Smith
Journal:  Development       Date:  1987-01       Impact factor: 6.868

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  77 in total

1.  Cas9-based genome editing in Xenopus tropicalis.

Authors:  Takuya Nakayama; Ira L Blitz; Margaret B Fish; Akinleye O Odeleye; Sumanth Manohar; Ken W Y Cho; Robert M Grainger
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

2.  Genetics, Morphology, Advertisement Calls, and Historical Records Distinguish Six New Polyploid Species of African Clawed Frog (Xenopus, Pipidae) from West and Central Africa.

Authors:  Ben J Evans; Timothy F Carter; Eli Greenbaum; Václav Gvoždík; Darcy B Kelley; Patrick J McLaughlin; Olivier S G Pauwels; Daniel M Portik; Edward L Stanley; Richard C Tinsley; Martha L Tobias; David C Blackburn
Journal:  PLoS One       Date:  2015-12-16       Impact factor: 3.240

3.  Xenopus pax6 mutants affect eye development and other organ systems, and have phenotypic similarities to human aniridia patients.

Authors:  Takuya Nakayama; Marilyn Fisher; Keisuke Nakajima; Akinleye O Odeleye; Keith B Zimmerman; Margaret B Fish; Yoshio Yaoita; Jena L Chojnowski; James D Lauderdale; Peter A Netland; Robert M Grainger
Journal:  Dev Biol       Date:  2015-02-25       Impact factor: 3.582

4.  In vivo investigation of cilia structure and function using Xenopus.

Authors:  Eric R Brooks; John B Wallingford
Journal:  Methods Cell Biol       Date:  2015-03-09       Impact factor: 1.441

5.  A Molecular atlas of Xenopus respiratory system development.

Authors:  Scott A Rankin; Hong Thi Tran; Marcin Wlizla; Pamela Mancini; Emily T Shifley; Sean D Bloor; Lu Han; Kris Vleminckx; Susan E Wert; Aaron M Zorn
Journal:  Dev Dyn       Date:  2014-09-11       Impact factor: 3.780

6.  Simple and efficient CRISPR/Cas9-mediated targeted mutagenesis in Xenopus tropicalis.

Authors:  Takuya Nakayama; Margaret B Fish; Marilyn Fisher; Jamina Oomen-Hajagos; Gerald H Thomsen; Robert M Grainger
Journal:  Genesis       Date:  2013-12       Impact factor: 2.487

Review 7.  Expanding the genetic toolkit in Xenopus: Approaches and opportunities for human disease modeling.

Authors:  Panna Tandon; Frank Conlon; J David Furlow; Marko E Horb
Journal:  Dev Biol       Date:  2016-04-22       Impact factor: 3.582

8.  Alternative polyadenylation coordinates embryonic development, sexual dimorphism and longitudinal growth in Xenopus tropicalis.

Authors:  Xiang Zhou; Yangzi Zhang; Jennifer J Michal; Lujiang Qu; Shuwen Zhang; Mark R Wildung; Weiwei Du; Derek J Pouchnik; Hui Zhao; Yin Xia; Honghua Shi; Guoli Ji; Jon F Davis; Gary D Smith; Michael D Griswold; Richard M Harland; Zhihua Jiang
Journal:  Cell Mol Life Sci       Date:  2019-02-07       Impact factor: 9.261

9.  Microarray analysis of Xenopus endoderm expressing Ptf1a.

Authors:  Cassandra K Bilogan; Marko E Horb
Journal:  Genesis       Date:  2012-08-16       Impact factor: 2.487

10.  The Xenopus oocyte: a single-cell model for studying Ca2+ signaling.

Authors:  Yaping Lin-Moshier; Jonathan S Marchant
Journal:  Cold Spring Harb Protoc       Date:  2013-03-01
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