Literature DB >> 27109192

Expanding the genetic toolkit in Xenopus: Approaches and opportunities for human disease modeling.

Panna Tandon1, Frank Conlon2, J David Furlow3, Marko E Horb4.   

Abstract

The amphibian model Xenopus, has been used extensively over the past century to study multiple aspects of cell and developmental biology. Xenopus offers advantages of a non-mammalian system, including high fecundity, external development, and simple housing requirements, with additional advantages of large embryos, highly conserved developmental processes, and close evolutionary relationship to higher vertebrates. There are two main species of Xenopus used in biomedical research, Xenopus laevis and Xenopus tropicalis; the common perception is that both species are excellent models for embryological and cell biological studies, but only Xenopus tropicalis is useful as a genetic model. The recent completion of the Xenopus laevis genome sequence combined with implementation of genome editing tools, such as TALENs (transcription activator-like effector nucleases) and CRISPR-Cas (clustered regularly interspaced short palindromic repeats-CRISPR associated nucleases), greatly facilitates the use of both Xenopus laevis and Xenopus tropicalis for understanding gene function in development and disease. In this paper, we review recent advances made in Xenopus laevis and Xenopus tropicalis with TALENs and CRISPR-Cas and discuss the various approaches that have been used to generate knockout and knock-in animals in both species. These advances show that both Xenopus species are useful for genetic approaches and in particular counters the notion that Xenopus laevis is not amenable to genetic manipulations.
Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CRISPR-Cas; Human disease model; J strain; Knock-in; TALENs; Xenopus laevis; Xenopus tropicalis

Mesh:

Substances:

Year:  2016        PMID: 27109192      PMCID: PMC5074924          DOI: 10.1016/j.ydbio.2016.04.009

Source DB:  PubMed          Journal:  Dev Biol        ISSN: 0012-1606            Impact factor:   3.582


  133 in total

1.  Identification of genes that are associated with DNA repeats in prokaryotes.

Authors:  Ruud Jansen; Jan D A van Embden; Wim Gaastra; Leo M Schouls
Journal:  Mol Microbiol       Date:  2002-03       Impact factor: 3.501

2.  Development and characterization of a model system to study amphibian immune responses to iridoviruses.

Authors:  Jennifer Gantress; Gregory D Maniero; Nicholas Cohen; Jacques Robert
Journal:  Virology       Date:  2003-07-05       Impact factor: 3.616

Review 3.  Xenopus: An emerging model for studying congenital heart disease.

Authors:  Erin Kaltenbrun; Panna Tandon; Nirav M Amin; Lauren Waldron; Chris Showell; Frank L Conlon
Journal:  Birth Defects Res A Clin Mol Teratol       Date:  2011-04-28

4.  Regeneration of Xenopus laevis spinal cord requires Sox2/3 expressing cells.

Authors:  Rosana Muñoz; Gabriela Edwards-Faret; Mauricio Moreno; Nikole Zuñiga; Hollis Cline; Juan Larraín
Journal:  Dev Biol       Date:  2015-03-19       Impact factor: 3.582

5.  Enzymatically Generated CRISPR Libraries for Genome Labeling and Screening.

Authors:  Andrew B Lane; Magdalena Strzelecka; Andreas Ettinger; Andrew W Grenfell; Torsten Wittmann; Rebecca Heald
Journal:  Dev Cell       Date:  2015-07-23       Impact factor: 12.270

6.  Generation of a Xenopus laevis F1 albino J strain by genome editing and oocyte host-transfer.

Authors:  Wil Ratzan; Rosalia Falco; Cristy Salanga; Matthew Salanga; Marko E Horb
Journal:  Dev Biol       Date:  2016-03-15       Impact factor: 3.582

7.  Generating transgenic frog embryos by restriction enzyme mediated integration (REMI).

Authors:  Shoko Ishibashi; Kristen L Kroll; Enrique Amaya
Journal:  Methods Mol Biol       Date:  2012

8.  Microhomology-mediated end-joining-dependent integration of donor DNA in cells and animals using TALENs and CRISPR/Cas9.

Authors:  Shota Nakade; Takuya Tsubota; Yuto Sakane; Satoshi Kume; Naoaki Sakamoto; Masanobu Obara; Takaaki Daimon; Hideki Sezutsu; Takashi Yamamoto; Tetsushi Sakuma; Ken-ichi T Suzuki
Journal:  Nat Commun       Date:  2014-11-20       Impact factor: 14.919

Review 9.  An oncologist׳s friend: How Xenopus contributes to cancer research.

Authors:  Laura J A Hardwick; Anna Philpott
Journal:  Dev Biol       Date:  2015-02-19       Impact factor: 3.582

10.  Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system.

Authors:  Baohui Chen; Luke A Gilbert; Beth A Cimini; Joerg Schnitzbauer; Wei Zhang; Gene-Wei Li; Jason Park; Elizabeth H Blackburn; Jonathan S Weissman; Lei S Qi; Bo Huang
Journal:  Cell       Date:  2013-12-19       Impact factor: 41.582

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  35 in total

1.  Tissue-Specific Gene Inactivation in Xenopus laevis: Knockout of lhx1 in the Kidney with CRISPR/Cas9.

Authors:  Bridget D DeLay; Mark E Corkins; Hannah L Hanania; Matthew Salanga; Jian Min Deng; Norihiro Sudou; Masanori Taira; Marko E Horb; Rachel K Miller
Journal:  Genetics       Date:  2017-11-29       Impact factor: 4.562

2.  Defective heart chamber growth and myofibrillogenesis after knockout of adprhl1 gene function by targeted disruption of the ancestral catalytic active site.

Authors:  Stuart J Smith; Norma Towers; Kim Demetriou; Timothy J Mohun
Journal:  PLoS One       Date:  2020-07-29       Impact factor: 3.240

3.  An in vivo brain-bacteria interface: the developing brain as a key regulator of innate immunity.

Authors:  Celia Herrera-Rincon; Jean-Francois Paré; Christopher J Martyniuk; Sophia K Jannetty; Christina Harrison; Alina Fischer; Alexandre Dinis; Vishal Keshari; Richard Novak; Michael Levin
Journal:  NPJ Regen Med       Date:  2020-02-04

Review 4.  Xenopus as a model for studies in mechanical stress and cell division.

Authors:  Georgina A Stooke-Vaughan; Lance A Davidson; Sarah Woolner
Journal:  Genesis       Date:  2017-01       Impact factor: 2.487

Review 5.  A frog's view of EphrinB signaling.

Authors:  Yoo-Seok Hwang; Ira O Daar
Journal:  Genesis       Date:  2017-01       Impact factor: 2.487

6.  Tumor immunology viewed from alternative animal models-the Xenopus story.

Authors:  Maureen Banach; Jacques Robert
Journal:  Curr Pathobiol Rep       Date:  2017-01-26

7.  Protein localization screening in vivo reveals novel regulators of multiciliated cell development and function.

Authors:  Fan Tu; Jakub Sedzinski; Yun Ma; Edward M Marcotte; John B Wallingford
Journal:  J Cell Sci       Date:  2018-01-29       Impact factor: 5.285

8.  The plus maze and scototaxis test are not valid behavioral assays for anxiety assessment in the South African clawed frog.

Authors:  R Boone Coleman; Kelsey Aguirre; Hannah P Spiegel; Celina Pecos; James A Carr; Breanna N Harris
Journal:  J Comp Physiol A Neuroethol Sens Neural Behav Physiol       Date:  2019-05-29       Impact factor: 1.836

9.  Molecular markers for corneal epithelial cells in larval vs. adult Xenopus frogs.

Authors:  Surabhi Sonam; Jennifer A Srnak; Kimberly J Perry; Jonathan J Henry
Journal:  Exp Eye Res       Date:  2019-04-11       Impact factor: 3.467

Review 10.  Advancing genetic and genomic technologies deepen the pool for discovery in Xenopus tropicalis.

Authors:  Anneke Kakebeen; Andrea Wills
Journal:  Dev Dyn       Date:  2019-07-09       Impact factor: 3.780

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