Literature DB >> 25899289

Nonuniform sampling of hypercomplex multidimensional NMR experiments: Dimensionality, quadrature phase and randomization.

Adam D Schuyler1, Mark W Maciejewski2, Alan S Stern3, Jeffrey C Hoch4.   

Abstract

Nonuniform sampling (NUS) in multidimensional NMR permits the exploration of higher dimensional experiments and longer evolution times than the Nyquist Theorem practically allows for uniformly sampled experiments. However, the spectra of NUS data include sampling-induced artifacts and may be subject to distortions imposed by sparse data reconstruction techniques, issues not encountered with the discrete Fourier transform (DFT) applied to uniformly sampled data. The characterization of these NUS-induced artifacts allows for more informed sample schedule design and improved spectral quality. The DFT-Convolution Theorem, via the point-spread function (PSF) for a given sampling scheme, provides a useful framework for exploring the nature of NUS sampling artifacts. In this work, we analyze the PSFs for a set of specially constructed NUS schemes to quantify the interplay between randomization and dimensionality for reducing artifacts relative to uniformly undersampled controls. In particular, we find a synergistic relationship between the indirect time dimensions and the "quadrature phase dimension" (i.e. the hypercomplex components collected for quadrature detection). The quadrature phase dimension provides additional degrees of freedom that enable partial-component NUS (collecting a subset of quadrature components) to further reduce sampling-induced aliases relative to traditional full-component NUS (collecting all quadrature components). The efficacy of artifact reduction is exponentially related to the dimensionality of the sample space. Our results quantify the utility of partial-component NUS as an additional means for introducing decoherence into sampling schemes and reducing sampling artifacts in high dimensional experiments.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Aliasing; Compressed sensing; Discrete Fourier transform (DFT); Partial-component NUS; Point-spread function (PSF)

Mesh:

Year:  2015        PMID: 25899289      PMCID: PMC4420639          DOI: 10.1016/j.jmr.2015.02.015

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  22 in total

1.  Novel 2D triple-resonance NMR experiments for sequential resonance assignments of proteins.

Authors:  Keyang Ding; Angela M Gronenborn
Journal:  J Magn Reson       Date:  2002-06       Impact factor: 2.229

2.  Generalized reconstruction of n-D NMR spectra from multiple projections: application to the 5-D HACACONH spectrum of protein G B1 domain.

Authors:  Brian E Coggins; Ronald A Venters; Pei Zhou
Journal:  J Am Chem Soc       Date:  2004-02-04       Impact factor: 15.419

3.  Combining methods for speeding up multi-dimensional acquisition. Sparse sampling and fast pulsing methods for unfolded proteins.

Authors:  Dominique Marion
Journal:  J Magn Reson       Date:  2010-06-12       Impact factor: 2.229

4.  Fast multidimensional NMR: radial sampling of evolution space.

Authors:  Eriks Kupce; Ray Freeman
Journal:  J Magn Reson       Date:  2005-04       Impact factor: 2.229

5.  Spectral reconstruction methods in fast NMR: reduced dimensionality, random sampling and maximum entropy.

Authors:  Mehdi Mobli; Alan S Stern; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2006-07-11       Impact factor: 2.229

6.  Sampling of the NMR time domain along concentric rings.

Authors:  Brian E Coggins; Pei Zhou
Journal:  J Magn Reson       Date:  2006-10-27       Impact factor: 2.229

7.  Sparse MRI: The application of compressed sensing for rapid MR imaging.

Authors:  Michael Lustig; David Donoho; John M Pauly
Journal:  Magn Reson Med       Date:  2007-12       Impact factor: 4.668

8.  Randomization improves sparse sampling in multidimensional NMR.

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Blagoje Filipovic
Journal:  J Magn Reson       Date:  2008-05-21       Impact factor: 2.229

Review 9.  Data sampling in multidimensional NMR: fundamentals and strategies.

Authors:  Mark W Maciejewski; Mehdi Mobli; Adam D Schuyler; Alan S Stern; Jeffrey C Hoch
Journal:  Top Curr Chem       Date:  2012

10.  Poisson-gap sampling and forward maximum entropy reconstruction for enhancing the resolution and sensitivity of protein NMR data.

Authors:  Sven G Hyberts; Koh Takeuchi; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2010-02-24       Impact factor: 15.419

View more
  6 in total

1.  Time-domain signal modelling in multidimensional NMR experiments for estimation of relaxation parameters.

Authors:  Yevgen Matviychuk; Mark J Bostock; Daniel Nietlispach; Daniel J Holland
Journal:  J Biomol NMR       Date:  2019-05-04       Impact factor: 2.835

2.  The influence of the probability density function on spectral quality in nonuniformly sampled multidimensional NMR.

Authors:  Matthew A Zambrello; D Levi Craft; Jeffrey C Hoch; David Rovnyak; Adam D Schuyler
Journal:  J Magn Reson       Date:  2019-12-20       Impact factor: 2.229

3.  A 300-fold enhancement of imino nucleic acid resonances by hyperpolarized water provides a new window for probing RNA refolding by 1D and 2D NMR.

Authors:  Mihajlo Novakovic; Gregory L Olsen; György Pintér; Daniel Hymon; Boris Fürtig; Harald Schwalbe; Lucio Frydman
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-16       Impact factor: 11.205

Review 4.  Recommended strategies for spectral processing and post-processing of 1D 1H-NMR data of biofluids with a particular focus on urine.

Authors:  Abdul-Hamid Emwas; Edoardo Saccenti; Xin Gao; Ryan T McKay; Vitor A P Martins Dos Santos; Raja Roy; David S Wishart
Journal:  Metabolomics       Date:  2018-02-12       Impact factor: 4.290

5.  A simple approach for reconstruction of non-uniformly sampled pseudo-3D NMR data for accurate measurement of spin relaxation parameters.

Authors:  Kyle W East; Frank Delaglio; George P Lisi
Journal:  J Biomol NMR       Date:  2021-05-07       Impact factor: 2.582

6.  Improving resolution in multidimensional NMR using random quadrature detection with compressed sensing reconstruction.

Authors:  M J Bostock; D J Holland; D Nietlispach
Journal:  J Biomol NMR       Date:  2016-09-20       Impact factor: 2.835

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.