Literature DB >> 21562616

Maximum Entropy Spectral Reconstruction of Non-Uniformly Sampled Data.

Mehdi Mobli1, Jeffrey C Hoch.   

Abstract

The time required to complete a multidimensional NMR experiment is directly proportional to the number of evolution times sampled in the indirect dimensions. A consequence when utilizing conventional methods of data acquisition and spectrum analysis is that resolution in the indirect dimensions is frequently sample-limited. The problem becomes more acute at very high magnetic fields, where increased chemical shift dispersion requires shorter time increments to avoid aliasing. It has long been recognized that a way to avoid this limitation is to utilize methods of spectrum analysis that do not require data to be sampled at uniform intervals, permitting the collection of data at long evolution times requisite for high resolution without requiring collection of data at all intervening multiples of the sampling interval. Several promising methods have evolved that are seemingly quite different, yet can be shown to yield similar results when applied to similar sampling strategies, emphasizing the importance of the choice of samples, regardless of the technique used to compute the spectrum. Maximum entropy (MaxEnt) reconstruction is a very general method for spectrum analysis of non-uniformly sampled data (NUS), and because it can be used with essentially arbitrary sampling strategies and makes no assumptions about the nature of the signal, it provides a convenient basis for exploring the influence of the choice of samples on spectral quality. In this article we use this versatility of MaxEnt reconstruction to compare different approaches to NUS in multidimensional NMR and suggest strategies for improving spectral quality by careful choice of sample times.

Entities:  

Year:  2008        PMID: 21562616      PMCID: PMC3090151          DOI: 10.1002/cmr.a.20126

Source DB:  PubMed          Journal:  Concepts Magn Reson Part A Bridg Educ Res        ISSN: 1546-6086            Impact factor:   0.481


  33 in total

Review 1.  Maximum entropy reconstruction, spectrum analysis and deconvolution in multidimensional nuclear magnetic resonance.

Authors:  J C Hoch; A S Stern
Journal:  Methods Enzymol       Date:  2001       Impact factor: 1.600

2.  Novel 2D triple-resonance NMR experiments for sequential resonance assignments of proteins.

Authors:  Keyang Ding; Angela M Gronenborn
Journal:  J Magn Reson       Date:  2002-06       Impact factor: 2.229

3.  Accelerated acquisition of high resolution triple-resonance spectra using non-uniform sampling and maximum entropy reconstruction.

Authors:  David Rovnyak; Dominique P Frueh; Mallika Sastry; Zhen-Yu J Sun; Alan S Stern; Jeffrey C Hoch; Gerhard Wagner
Journal:  J Magn Reson       Date:  2004-09       Impact factor: 2.229

4.  Fast multidimensional NMR: radial sampling of evolution space.

Authors:  Eriks Kupce; Ray Freeman
Journal:  J Magn Reson       Date:  2005-04       Impact factor: 2.229

5.  Automated projection spectroscopy (APSY).

Authors:  Sebastian Hiller; Francesco Fiorito; Kurt Wüthrich; Gerhard Wider
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-25       Impact factor: 11.205

6.  Spectral reconstruction methods in fast NMR: reduced dimensionality, random sampling and maximum entropy.

Authors:  Mehdi Mobli; Alan S Stern; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2006-07-11       Impact factor: 2.229

7.  Sequence-specific resonance assignment of soluble nonglobular proteins by 7D APSY-NMR spectroscopy.

Authors:  Sebastian Hiller; Christian Wasmer; Gerhard Wider; Kurt Wüthrich
Journal:  J Am Chem Soc       Date:  2007-08-11       Impact factor: 15.419

8.  Randomization improves sparse sampling in multidimensional NMR.

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Blagoje Filipovic
Journal:  J Magn Reson       Date:  2008-05-21       Impact factor: 2.229

9.  Quantification of maximum-entropy spectrum reconstructions.

Authors:  P Schmieder; A S Stern; G Wagner; J C Hoch
Journal:  J Magn Reson       Date:  1997-04       Impact factor: 2.229

10.  Theory and application of the maximum likelihood principle to NMR parameter estimation of multidimensional NMR data.

Authors:  R A Chylla; J L Markley
Journal:  J Biomol NMR       Date:  1995-04       Impact factor: 2.835

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  23 in total

1.  Random phase detection in multidimensional NMR.

Authors:  Mark W Maciejewski; Matthew Fenwick; Adam D Schuyler; Alan S Stern; Vitaliy Gorbatyuk; Jeffrey C Hoch
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-26       Impact factor: 11.205

2.  Non-uniform sampling of NMR relaxation data.

Authors:  Troels E Linnet; Kaare Teilum
Journal:  J Biomol NMR       Date:  2016-02-04       Impact factor: 2.835

3.  4D non-uniformly sampled HCBCACON and ¹J(NCα)-selective HCBCANCO experiments for the sequential assignment and chemical shift analysis of intrinsically disordered proteins.

Authors:  Jiří Nováček; Noam Y Haba; Jordan H Chill; Lukáš Zídek; Vladimír Sklenář
Journal:  J Biomol NMR       Date:  2012-05-13       Impact factor: 2.835

4.  Accurate scoring of non-uniform sampling schemes for quantitative NMR.

Authors:  Phillip C Aoto; R Bryn Fenwick; Gerard J A Kroon; Peter E Wright
Journal:  J Magn Reson       Date:  2014-07-02       Impact factor: 2.229

5.  A non-uniformly sampled 4D HCC(CO)NH-TOCSY experiment processed using maximum entropy for rapid protein sidechain assignment.

Authors:  Mehdi Mobli; Alan S Stern; Wolfgang Bermel; Glenn F King; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2010-03-01       Impact factor: 2.229

6.  5D 13C-detected experiments for backbone assignment of unstructured proteins with a very low signal dispersion.

Authors:  Jiří Nováček; Anna Zawadzka-Kazimierczuk; Veronika Papoušková; Lukáš Zídek; Hana Sanderová; Libor Krásný; Wiktor Koźmiński; Vladimír Sklenář
Journal:  J Biomol NMR       Date:  2011-03-20       Impact factor: 2.835

7.  Reaching the sparse-sampling limit for reconstructing a single peak in a 2D NMR spectrum using iterated maps.

Authors:  Robert L Blum; Jared Rovny; J Patrick Loria; Sean E Barrett
Journal:  J Biomol NMR       Date:  2019-07-10       Impact factor: 2.835

8.  Accelerating 2D NMR relaxation dispersion experiments using iterated maps.

Authors:  Jared Rovny; Robert L Blum; J Patrick Loria; Sean E Barrett
Journal:  J Biomol NMR       Date:  2019-07-06       Impact factor: 2.835

Review 9.  Nonuniform sampling and non-Fourier signal processing methods in multidimensional NMR.

Authors:  Mehdi Mobli; Jeffrey C Hoch
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2014-10-13       Impact factor: 9.795

10.  The N-terminal tail of hERG contains an amphipathic α-helix that regulates channel deactivation.

Authors:  Chai Ann Ng; Mark J Hunter; Matthew D Perry; Mehdi Mobli; Ying Ke; Philip W Kuchel; Glenn F King; Daniela Stock; Jamie I Vandenberg
Journal:  PLoS One       Date:  2011-01-13       Impact factor: 3.240

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