Literature DB >> 19838167

What recent ribosome structures have revealed about the mechanism of translation.

T Martin Schmeing1, V Ramakrishnan.   

Abstract

The high-resolution structures of ribosomal subunits published in 2000 have revolutionized the field of protein translation. They facilitated the determination and interpretation of functional complexes of the ribosome by crystallography and electron microscopy. Knowledge of the precise positions of residues in the ribosome in various states has facilitated increasingly sophisticated biochemical and genetic experiments, as well as the use of new methods such as single-molecule kinetics. In this review, we discuss how the interaction between structural and functional studies over the last decade has led to a deeper understanding of the complex mechanisms underlying translation.

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Year:  2009        PMID: 19838167     DOI: 10.1038/nature08403

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  133 in total

1.  Stimulation of the GTPase activity of translation elongation factor G by ribosomal protein L7/12.

Authors:  A Savelsbergh; D Mohr; B Wilden; W Wintermeyer; M V Rodnina
Journal:  J Biol Chem       Date:  2000-01-14       Impact factor: 5.157

2.  Release of peptide promoted by the GGQ motif of class 1 release factors regulates the GTPase activity of RF3.

Authors:  Andrei V Zavialov; Liliana Mora; Richard H Buckingham; Måns Ehrenberg
Journal:  Mol Cell       Date:  2002-10       Impact factor: 17.970

3.  The G2447A mutation does not affect ionization of a ribosomal group taking part in peptide bond formation.

Authors:  Malte Beringer; Sarah Adio; Wolfgang Wintermeyer; Marina Rodnina
Journal:  RNA       Date:  2003-08       Impact factor: 4.942

4.  GTP hydrolysis by IF2 guides progression of the ribosome into elongation.

Authors:  R Andrew Marshall; Colin Echeverría Aitken; Joseph D Puglisi
Journal:  Mol Cell       Date:  2009-07-10       Impact factor: 17.970

5.  Structural basis for aminoglycoside inhibition of bacterial ribosome recycling.

Authors:  Maria A Borovinskaya; Raj D Pai; Wen Zhang; Barbara S Schuwirth; James M Holton; Go Hirokawa; Hideko Kaji; Akira Kaji; Jamie H Doudna Cate
Journal:  Nat Struct Mol Biol       Date:  2007-07-29       Impact factor: 15.369

6.  Donor site of ribosomal peptidyltransferase: investigation of substrate specificity using 2'(3')-O-(N-acylaminoacyl)dinucleoside phosphates as models of the 3' terminus of N-acylaminoacyl transfer ribonucleic acid.

Authors:  K Quiggle; G Kumar; T W Ott; E K Ryu; S Chládek
Journal:  Biochemistry       Date:  1981-06-09       Impact factor: 3.162

7.  Study of the structural dynamics of the E coli 70S ribosome using real-space refinement.

Authors:  Haixiao Gao; Jayati Sengupta; Mikel Valle; Andrei Korostelev; Narayanan Eswar; Scott M Stagg; Patrick Van Roey; Rajendra K Agrawal; Stephen C Harvey; Andrej Sali; Michael S Chapman; Joachim Frank
Journal:  Cell       Date:  2003-06-13       Impact factor: 41.582

8.  Binding of the 3' terminus of tRNA to 23S rRNA in the ribosomal exit site actively promotes translocation.

Authors:  R Lill; J M Robertson; W Wintermeyer
Journal:  EMBO J       Date:  1989-12-01       Impact factor: 11.598

9.  Three-dimensional structure of the ribosomal translocase: elongation factor G from Thermus thermophilus.

Authors:  A AEvarsson; E Brazhnikov; M Garber; J Zheltonosova; Y Chirgadze; S al-Karadaghi; L A Svensson; A Liljas
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

10.  The crystal structure of elongation factor G complexed with GDP, at 2.7 A resolution.

Authors:  J Czworkowski; J Wang; T A Steitz; P B Moore
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

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  271 in total

1.  Evaluation of the energetics of the concerted acid-base mechanism in enzymatic catalysis: the case of ketosteroid isomerase.

Authors:  Stephen D Fried; Steven G Boxer
Journal:  J Phys Chem B       Date:  2011-12-28       Impact factor: 2.991

2.  A 5'-terminal phosphate is required for stable ternary complex formation and translation of leaderless mRNA in Escherichia coli.

Authors:  Jacqueline Giliberti; Sean O'Donnell; William J Van Etten; Gary R Janssen
Journal:  RNA       Date:  2012-01-30       Impact factor: 4.942

3.  Allosteric vs. spontaneous exit-site (E-site) tRNA dissociation early in protein synthesis.

Authors:  Chunlai Chen; Benjamin Stevens; Jaskiran Kaur; Zeev Smilansky; Barry S Cooperman; Yale E Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

4.  The conserved protein EF4 (LepA) modulates the elongation cycle of protein synthesis.

Authors:  Hanqing Liu; Chunlai Chen; Haibo Zhang; Jaskiran Kaur; Yale E Goldman; Barry S Cooperman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-19       Impact factor: 11.205

5.  Functional elucidation of a key contact between tRNA and the large ribosomal subunit rRNA during decoding.

Authors:  Rodrigo F Ortiz-Meoz; Rachel Green
Journal:  RNA       Date:  2010-08-25       Impact factor: 4.942

6.  Protein synthesis: Translocation in slow motion.

Authors:  Måns Ehrenberg
Journal:  Nature       Date:  2010-07-15       Impact factor: 49.962

7.  Structure of the 70S ribosome bound to release factor 2 and a substrate analog provides insights into catalysis of peptide release.

Authors:  Hong Jin; Ann C Kelley; David Loakes; V Ramakrishnan
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-26       Impact factor: 11.205

8.  Conformational sampling of aminoacyl-tRNA during selection on the bacterial ribosome.

Authors:  Peter Geggier; Richa Dave; Michael B Feldman; Daniel S Terry; Roger B Altman; James B Munro; Scott C Blanchard
Journal:  J Mol Biol       Date:  2010-04-29       Impact factor: 5.469

Review 9.  Molecular view of 43 S complex formation and start site selection in eukaryotic translation initiation.

Authors:  Jon R Lorsch; Thomas E Dever
Journal:  J Biol Chem       Date:  2010-05-05       Impact factor: 5.157

Review 10.  Profiling of protein interaction networks of protein complexes using affinity purification and quantitative mass spectrometry.

Authors:  Robyn M Kaake; Xiaorong Wang; Lan Huang
Journal:  Mol Cell Proteomics       Date:  2010-05-05       Impact factor: 5.911

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